-
2
-
-
31544450286
-
Construction of Escherichia coli K-12 in-frame, singlegene knockout mutants: The Keio collection
-
Baba, T., et al. 2006. Construction of Escherichia coli K-12 in-frame, singlegene knockout mutants: the Keio collection. Mol. Syst. Biol. 2:2006.
-
(2006)
Mol. Syst. Biol.
, vol.2
, pp. 2006
-
-
Baba, T.1
-
3
-
-
33745021288
-
Characterization of Escherichia coli translesion synthesis polymerases and their accessory factors
-
Beuning, P. J., S. M. Simon, V. G. Godoy, D. F. Jarosz, and G. C. Walker. 2006. Characterization of Escherichia coli translesion synthesis polymerases and their accessory factors. Methods Enzymol. 408:318-340.
-
(2006)
Methods Enzymol.
, vol.408
, pp. 318-340
-
-
Beuning, P.J.1
Simon, S.M.2
Godoy, V.G.3
Jarosz, D.F.4
Walker, G.C.5
-
4
-
-
0026094779
-
Adaptive reversion of a frameshift mutation in Escherichia coli
-
Cairns, J., and P. L. Foster. 1991. Adaptive reversion of a frameshift mutation in Escherichia coli. Genetics 128:695-701.
-
(1991)
Genetics
, vol.128
, pp. 695-701
-
-
Cairns, J.1
Foster, P.L.2
-
5
-
-
0027378209
-
-) strains of Escherichia coli
-
Chua, K. L., Y. K. Mak, and P. Oliver. 1993. Expression of the recA gene in recombination-deficient (rec-) strains of Escherichia coli. Biochimie 75:775-783.
-
(1993)
Biochimie
, vol.75
, pp. 775-783
-
-
Chua, K.L.1
Mak, Y.K.2
Oliver, P.3
-
6
-
-
0024558335
-
One-step preparation of competent Escherichia coli: Transformation and storage of bacterial cells in the same solution
-
Chung, C. T., S. L. Niemela, and R. H. Miller. 1989. One-step preparation of competent Escherichia coli: transformation and storage of bacterial cells in the same solution. Proc. Natl. Acad. Sci. U. S. A. 86:2172-2175.
-
(1989)
Proc. Natl. Acad. Sci. U. S. A.
, vol.86
, pp. 2172-2175
-
-
Chung, C.T.1
Niemela, S.L.2
Miller, R.H.3
-
7
-
-
58649088239
-
Transcriptional modulator NusA interacts with translesion DNA polymerases in Escherichia coli
-
Cohen, S. E., V. G. Godoy, and G. C. Walker. 2009. Transcriptional modulator NusA interacts with translesion DNA polymerases in Escherichia coli. J. Bacteriol. 191:665-672.
-
(2009)
J. Bacteriol.
, vol.191
, pp. 665-672
-
-
Cohen, S.E.1
Godoy, V.G.2
Walker, G.C.3
-
8
-
-
73449087603
-
The transcription elongation factor NusA is required for stress-induced mutagenesis in Escherichia coli
-
Cohen, S. E., and G. C. Walker. 2010. The transcription elongation factor NusA is required for stress-induced mutagenesis in Escherichia coli. Curr. Biol. 20:80-85.
-
(2010)
Curr. Biol.
, vol.20
, pp. 80-85
-
-
Cohen, S.E.1
Walker, G.C.2
-
9
-
-
0032493294
-
The SbcCD nuclease of Escherichia coli is a structural maintenance of chromosomes (SMC) family protein that cleaves hairpin DNA
-
Connelly, J. C., L. A. Kirkham, and D. R. F. Leach. 1998. The SbcCD nuclease of Escherichia coli is a structural maintenance of chromosomes (SMC) family protein that cleaves hairpin DNA. Proc. Natl. Acad. Sci. U. S. A. 95:7969-7974.
-
(1998)
Proc. Natl. Acad. Sci. U. S. A.
, vol.95
, pp. 7969-7974
-
-
Connelly, J.C.1
Kirkham, L.A.2
Leach, D.R.F.3
-
10
-
-
0030089480
-
The sbcC and sbcD genes of Escherichia coli encode a nuclease involved in palindrome inviability and genetic recombination
-
Connelly, J. C., and D. R. F. Leach. 1996. The sbcC and sbcD genes of Escherichia coli encode a nuclease involved in palindrome inviability and genetic recombination. Genes Cells 1:285-291.
-
(1996)
Genes Cells
, vol.1
, pp. 285-291
-
-
Connelly, J.C.1
Leach, D.R.F.2
-
11
-
-
0035023305
-
Comparative gene expression profiles following UV exposure in wildtype and SOS-deficient Escherichia coli
-
Courcelle, J., A. Khodursky, B. Peter, P. O. Brown, and P. C. Hanawalt. 2001. Comparative gene expression profiles following UV exposure in wildtype and SOS-deficient Escherichia coli. Genetics 158:41-64.
-
(2001)
Genetics
, vol.158
, pp. 41-64
-
-
Courcelle, J.1
Khodursky, A.2
Peter, B.3
Brown, P.O.4
Hanawalt, P.C.5
-
12
-
-
0035724134
-
Recombinational repair of chromosomal DNA double-strand breaks generated by a restriction endonuclease
-
Cromie, G. A., and D. R. Leach. 2001. Recombinational repair of chromosomal DNA double-strand breaks generated by a restriction endonuclease. Mol. Microbiol. 41:873-883.
-
(2001)
Mol. Microbiol.
, vol.41
, pp. 873-883
-
-
Cromie, G.A.1
Leach, D.R.2
-
13
-
-
34548565834
-
SbcCD regulation and localization in Escherichia coli
-
Darmon, E., et al. 2007. SbcCD regulation and localization in Escherichia coli. J. Bacteriol. 189:6686-6694.
-
(2007)
J. Bacteriol.
, vol.189
, pp. 6686-6694
-
-
Darmon, E.1
-
14
-
-
0034612342
-
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
-
Datsenko, K. A., and B. L. Wanner. 2000. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl. Acad. Sci. U. S. A. 97:6640-6645.
-
(2000)
Proc. Natl. Acad. Sci. U. S. A.
, vol.97
, pp. 6640-6645
-
-
Datsenko, K.A.1
Wanner, B.L.2
-
15
-
-
39249084651
-
RpoS regulation of gene expression during exponential growth of Escherichia coli K12
-
a.Dong, T., M. G. Kirchhof, and H. E. Schellborn. 2008. RpoS regulation of gene expression during exponential growth of Escherichia coli K12. Mol. Genet. Genomics 279:267-277.
-
(2008)
Mol. Genet. Genomics
, vol.279
, pp. 267-277
-
-
Dong, T.1
Kirchhof, M.G.2
Schellborn, H.E.3
-
16
-
-
31544474634
-
Long-term survival during stationary phase: Evolution and the GASP phenotype
-
Finkel, S. E. 2006. Long-term survival during stationary phase: evolution and the GASP phenotype. Nat. Rev. Microbiol. 4:113-120.
-
(2006)
Nat. Rev. Microbiol.
, vol.4
, pp. 113-120
-
-
Finkel, S.E.1
-
17
-
-
0031046575
-
Nonadaptive mutations occur on the F′ episome during adaptive mutation conditions in Escherichia coli
-
Foster, P. L. 1997. Nonadaptive mutations occur on the F′ episome during adaptive mutation conditions in Escherichia coli. J. Bacteriol. 179:1550-1554.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 1550-1554
-
-
Foster, P.L.1
-
19
-
-
33745211644
-
Methods for determining spontaneous mutation rates
-
Foster, P. L. 2006. Methods for determining spontaneous mutation rates. Methods Enzymol. 409:195-213.
-
(2006)
Methods Enzymol.
, vol.409
, pp. 195-213
-
-
Foster, P.L.1
-
20
-
-
0029064479
-
Adaptive reversion of an episomal frameshift mutation in Escherichia coli requires conjugal functions but not actual conjugation
-
Foster, P. L., and J. M. Trimarchi. 1995. Adaptive reversion of an episomal frameshift mutation in Escherichia coli requires conjugal functions but not actual conjugation. Proc. Natl. Acad. Sci. U. S. A. 92:5487-5490.
-
(1995)
Proc. Natl. Acad. Sci. U. S. A.
, vol.92
, pp. 5487-5490
-
-
Foster, P.L.1
Trimarchi, J.M.2
-
21
-
-
10044234196
-
Properties and functions of Escherichia coli: Pol IV and Pol v
-
Fuchs, R. P., S. Fujii, and J. Wagner. 2004. Properties and functions of Escherichia coli: Pol IV and Pol V. Adv. Protein Chem. 69:229-264.
-
(2004)
Adv. Protein Chem.
, vol.69
, pp. 229-264
-
-
Fuchs, R.P.1
Fujii, S.2
Wagner, J.3
-
22
-
-
0029003985
-
Evidence that F plasmid transfer replication underlies apparent adaptive mutation
-
Galitski, T., and J. R. Roth. 1995. Evidence that F plasmid transfer replication underlies apparent adaptive mutation. Science 268:421-423.
-
(1995)
Science
, vol.268
, pp. 421-423
-
-
Galitski, T.1
Roth, J.R.2
-
23
-
-
39749200124
-
Role of accessory DNA polymerases in DNA replication in Escherichia coli: Analysis of the dnaX36 mutator mutant
-
Gawel, D., P. T. Pham, I. J. Fijalkowska, P. Jonczyk, and R. M. Schaaper. 2008. Role of accessory DNA polymerases in DNA replication in Escherichia coli: analysis of the dnaX36 mutator mutant. J. Bacteriol. 190:1730-1742.
-
(2008)
J. Bacteriol.
, vol.190
, pp. 1730-1742
-
-
Gawel, D.1
Pham, P.T.2
Fijalkowska, I.J.3
Jonczyk, P.4
Schaaper, R.M.5
-
24
-
-
37349132340
-
UmuD and RecA directly modulate the mutagenic potential of the y family DNA polymerase DinB
-
Godoy, V. G., et al. 2007. UmuD and RecA directly modulate the mutagenic potential of the Y family DNA polymerase DinB. Mol. Cell 28:1058-1070.
-
(2007)
Mol. Cell
, vol.28
, pp. 1058-1070
-
-
Godoy, V.G.1
-
25
-
-
0022346970
-
Identification of osmoresponsive genes in Escherichia coli: Evidence for participation of potassium and proline transport systems in osmoregulation
-
Gowrishankar, J. 1985. Identification of osmoresponsive genes in Escherichia coli: evidence for participation of potassium and proline transport systems in osmoregulation. J. Bacteriol. 164:434-445.
-
(1985)
J. Bacteriol.
, vol.164
, pp. 434-445
-
-
Gowrishankar, J.1
-
26
-
-
63049084910
-
Dynamics of the bacterial SMC complex and SMC-like proteins involved in DNA repair
-
Graumann, P. L., and T. Knust. 2009. Dynamics of the bacterial SMC complex and SMC-like proteins involved in DNA repair. Chromosome Res. 17:265-275.
-
(2009)
Chromosome Res.
, vol.17
, pp. 265-275
-
-
Graumann, P.L.1
Knust, T.2
-
27
-
-
0017708555
-
Identification of the recA (tif) gene product of Escherichia coli
-
Gudas, L. J., and D. W. Mount. 1977. Identification of the recA (tif) gene product of Escherichia coli. Proc. Natl. Acad. Sci. U. S. A. 74:5280-5284.
-
(1977)
Proc. Natl. Acad. Sci. U. S. A.
, vol.74
, pp. 5280-5284
-
-
Gudas, L.J.1
Mount, D.W.2
-
28
-
-
0029018327
-
Tight regulation, modulation, and high-level expression by vectors containing the arabinose pBAD promoter
-
Guzman, L. M., D. Belin, M. J. Carson, and J. Beckwith. 1995. Tight regulation, modulation, and high-level expression by vectors containing the arabinose pBAD promoter. J. Bacteriol. 177:4121-4130.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 4121-4130
-
-
Guzman, L.M.1
Belin, D.2
Carson, M.J.3
Beckwith, J.4
-
29
-
-
66349117823
-
Fluctuation analysis CalculatOR: A web tool for the determination of mutation rate using Luria-Delbruck fluctuation analysis
-
Hall, B. M., C. X. Ma, P. Liang, and K. K. Singh. 2009. Fluctuation analysis CalculatOR: a web tool for the determination of mutation rate using Luria-Delbruck fluctuation analysis. Bioinformatics 25:1564-1565.
-
(2009)
Bioinformatics
, vol.25
, pp. 1564-1565
-
-
Hall, B.M.1
Ma, C.X.2
Liang, P.3
Singh, K.K.4
-
30
-
-
0003448569
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Harlow, E., and D. Lane. 1988. Antibodies: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(1988)
Antibodies: A Laboratory Manual
-
-
Harlow, E.1
Lane, D.2
-
32
-
-
30344459720
-
Roles of E. coli double-strand-break-repair proteins in stress-induced mutation
-
He, A. S., P. R. Rohatgi, M. N. Hersh, and S. M. Rosenberg. 2006. Roles of E. coli double-strand-break-repair proteins in stress-induced mutation. DNA Repair (Amst.) 5:258-273.
-
(2006)
DNA Repair (Amst.)
, vol.5
, pp. 258-273
-
-
He, A.S.1
Rohatgi, P.R.2
Hersh, M.N.3
Rosenberg, S.M.4
-
33
-
-
69149093261
-
A model for DNA polymerase switching involving a single cleft and the rim of the sliding clamp
-
Heltzel, J. M., R. W. Maul, S. K. Scouten Ponticelli, and M. D. Sutton. 2009. A model for DNA polymerase switching involving a single cleft and the rim of the sliding clamp. Proc. Natl. Acad. Sci. U. S. A. 106:12664-12669.
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, pp. 12664-12669
-
-
Heltzel, J.M.1
Maul, R.W.2
Scouten Ponticelli, S.K.3
Sutton, M.D.4
-
34
-
-
65549153598
-
Translesion DNA polymerases remodel the replisome and alter the speed of the replicative helicase
-
Indiani, C., L. D. Langston, O. Yurieva, M. F. Goodman, and M. O'Donnell. 2009. Translesion DNA polymerases remodel the replisome and alter the speed of the replicative helicase. Proc. Natl. Acad. Sci. U. S. A. 106:6031-6038.
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, pp. 6031-6038
-
-
Indiani, C.1
Langston, L.D.2
Yurieva, O.3
Goodman, M.F.4
O'donnell, M.5
-
35
-
-
30544445218
-
A single amino acid governs enhanced activity of DinB DNA polymerases on damaged template
-
Jarosz, D. F., V. G. Godoy, J. C. Delaney, J. M. Essigmann, and G. C. Walker. 2006. A single amino acid governs enhanced activity of DinB DNA polymerases on damaged templates. Nature 439:225-228.
-
(2006)
Nature
, vol.439
, pp. 225-228
-
-
Jarosz, D.F.1
Godoy, V.G.2
Delaney, J.C.3
Essigmann, J.M.4
Walker, G.C.5
-
36
-
-
0039577881
-
DNA-damaging agents stimulate gene expression at specific loci in Escherichia coli
-
Kenyon, C. J., and G. C. Walker. 1980. DNA-damaging agents stimulate gene expression at specific loci in Escherichia coli. Proc. Natl. Acad. Sci. U. S. A. 77:2819-2823.
-
(1980)
Proc. Natl. Acad. Sci. U. S. A.
, vol.77
, pp. 2819-2823
-
-
Kenyon, C.J.1
Walker, G.C.2
-
37
-
-
0034789619
-
Roles of chromosomal and episomal dinB genes encoding DNA Pol IV in targeted and untargeted mutagenesis in Escherichia coli
-
Kim, S. R., K. Matsui, M. Yamada, P. Gruz, and T. Nohmi. 2001. Roles of chromosomal and episomal dinB genes encoding DNA Pol IV in targeted and untargeted mutagenesis in Escherichia coli. Mol. Genet. Genomics 266: 207-215.
-
(2001)
Mol. Genet. Genomics
, vol.266
, pp. 207-215
-
-
Kim, S.R.1
Matsui, K.2
Yamada, M.3
Gruz, P.4
Nohmi, T.5
-
38
-
-
0031443646
-
Multiple pathways for SOS-induced mutagenesis in Escherichia coli: An overexpression of dinB/dinP results in strongly enhancing mutagenesis in the absence of any exogenous treatment to damage DNA
-
Kim, S. R., et al. 1997. Multiple pathways for SOS-induced mutagenesis in Escherichia coli: an overexpression of dinB/dinP results in strongly enhancing mutagenesis in the absence of any exogenous treatment to damage DNA. Proc. Natl. Acad. Sci. U. S. A. 94:13792-13797.
-
(1997)
Proc. Natl. Acad. Sci. U. S. A.
, vol.94
, pp. 13792-13797
-
-
Kim, S.R.1
-
39
-
-
0037072865
-
Fidelity of Escherichia coli DNA polymerase IV. Preferential generation of small deletion mutations by dNTP-stabilized misalignment
-
Kobayashi, S., M. R. Valentine, P. Pham, M. O'Donnell, and M. F. Goodman. 2002. Fidelity of Escherichia coli DNA polymerase IV. Preferential generation of small deletion mutations by dNTP-stabilized misalignment. J. Biol. Chem. 277:34198-34207.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 34198-34207
-
-
Kobayashi, S.1
Valentine, M.R.2
Pham, P.3
O'donnell, M.4
Goodman, M.F.5
-
40
-
-
25144512348
-
Mutator phenotype resulting from DNA polymerase IV overproduction in Escherichia coli: Preferential mutagenesis on the lagging strand
-
Kuban, W., et al. 2005. Mutator phenotype resulting from DNA polymerase IV overproduction in Escherichia coli: preferential mutagenesis on the lagging strand. J. Bacteriol. 187:6862-6866.
-
(2005)
J. Bacteriol.
, vol.187
, pp. 6862-6866
-
-
Kuban, W.1
-
41
-
-
3042737053
-
Role of Escherichia coli DNA polymerase IV in in vivo replication fidelity
-
Kuban, W., et al. 2004. Role of Escherichia coli DNA polymerase IV in in vivo replication fidelity. J. Bacteriol. 186:4802-4807.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 4802-4807
-
-
Kuban, W.1
-
42
-
-
0028998597
-
Collapse and repair of replication forks in Escherichia coli
-
Kuzminov, A. 1995. Collapse and repair of replication forks in Escherichia coli. Mol. Microbiol. 16:373-384.
-
(1995)
Mol. Microbiol.
, vol.16
, pp. 373-384
-
-
Kuzminov, A.1
-
43
-
-
0142062024
-
Error-prone DNA polymerase IV is controlled by the stress-response sigma factor, RpoS, in Escherichia coli
-
Layton, J. C., and P. L. Foster. 2003. Error-prone DNA polymerase IV is controlled by the stress-response sigma factor, RpoS, in Escherichia coli. Mol. Microbiol. 50:549-561.
-
(2003)
Mol. Microbiol.
, vol.50
, pp. 549-561
-
-
Layton, J.C.1
Foster, P.L.2
-
44
-
-
11844294113
-
Error-prone DNA polymerase IV is regulated by the heat shock chaperone GroE in Escherichia coli
-
Layton, J. C., and P. L. Foster. 2005. Error-prone DNA polymerase IV is regulated by the heat shock chaperone GroE in Escherichia coli. J. Bacteriol. 187:449-457.
-
(2005)
J. Bacteriol.
, vol.187
, pp. 449-457
-
-
Layton, J.C.1
Foster, P.L.2
-
45
-
-
0028674914
-
Long DNA palindromes, cruciform structures, genetic instability and secondary structure repair
-
Leach, D. R. 1994. Long DNA palindromes, cruciform structures, genetic instability and secondary structure repair. Bioessays 16:893-900.
-
(1994)
Bioessays
, vol.16
, pp. 893-900
-
-
Leach, D.R.1
-
46
-
-
0022345185
-
Identification and genetic analysis of sbcC mutations in commonly used recBC sbcB strains of Escherichia coli K-12
-
Lloyd, R. G., and C. Buckman. 1985. Identification and genetic analysis of sbcC mutations in commonly used recBC sbcB strains of Escherichia coli K-12. J. Bacteriol. 164:836-844.
-
(1985)
J. Bacteriol.
, vol.164
, pp. 836-844
-
-
Lloyd, R.G.1
Buckman, C.2
-
47
-
-
0001641514
-
Mutations of bacteria from virus sensitivity to virus resistance
-
Luria, S. E., and M. Delbruck. 1943. Mutations of bacteria from virus sensitivity to virus resistance. Genetics 28:491-511.
-
(1943)
Genetics
, vol.28
, pp. 491-511
-
-
Luria, S.E.1
Delbruck, M.2
-
48
-
-
4444224780
-
Measurement of SOS expression in individual Escherichia coli K-12 cells using fluorescence microscopy
-
McCool, J. D., et al. 2004. Measurement of SOS expression in individual Escherichia coli K-12 cells using fluorescence microscopy. Mol. Microbiol. 53:1343-1357.
-
(2004)
Mol. Microbiol.
, vol.53
, pp. 1343-1357
-
-
McCool, J.D.1
-
49
-
-
38049125552
-
The fidelity of DNA synthesis by eukaryotic replicative and translesion synthesis polymerases
-
McCulloch, S. D., and T. A. Kunkel. 2008. The fidelity of DNA synthesis by eukaryotic replicative and translesion synthesis polymerases. Cell Res. 18:148-161.
-
(2008)
Cell Res.
, vol.18
, pp. 148-161
-
-
McCulloch, S.D.1
Kunkel, T.A.2
-
50
-
-
0017678032
-
Protein X is the product of the recA gene of Escherichia coli
-
McEntee, K. 1977. Protein X is the product of the recA gene of Escherichia coli. Proc. Natl. Acad. Sci. U. S. A. 74:5275-5279.
-
(1977)
Proc. Natl. Acad. Sci. U. S. A.
, vol.74
, pp. 5275-5279
-
-
McEntee, K.1
-
51
-
-
0035265678
-
SOS mutator DNA polymerase IV functions in adaptive mutation and not adaptive amplification
-
McKenzie, G. J., P. L. Lee, M. J. Lombardo, P. J. Hastings, and S. M. Rosenberg. 2001. SOS mutator DNA polymerase IV functions in adaptive mutation and not adaptive amplification. Mol. Cell 7:571-579.
-
(2001)
Mol. Cell
, vol.7
, pp. 571-579
-
-
McKenzie, G.J.1
Lee, P.L.2
Lombardo, M.J.3
Hastings, P.J.4
Rosenberg, S.M.5
-
53
-
-
67749113270
-
Nucleotide excision repair is a predominant mechanism for processing nitrofurazone-induced DNA damage in Escherichia coli
-
Ona, K. R., C. T. Courcelle, and J. Courcelle. 2009. Nucleotide excision repair is a predominant mechanism for processing nitrofurazone-induced DNA damage in Escherichia coli. J. Bacteriol. 191:4959-4965.
-
(2009)
J. Bacteriol.
, vol.191
, pp. 4959-4965
-
-
Ona, K.R.1
Courcelle, C.T.2
Courcelle, J.3
-
54
-
-
77952843550
-
A new model for SOS-induced mutagenesis: How RecA protein activates DNA polymerase v
-
Patel, M., Q. Jiang, R. Woodgate, M. M. Cox, and M. F. Goodman. 2010. A new model for SOS-induced mutagenesis: how RecA protein activates DNA polymerase V. Crit. Rev. Biochem. Mol. Biol. 45:171-184.
-
(2010)
Crit. Rev. Biochem. Mol. Biol.
, vol.45
, pp. 171-184
-
-
Patel, M.1
Jiang, Q.2
Woodgate, R.3
Cox, M.M.4
Goodman, M.F.5
-
55
-
-
13244259382
-
Microarray analysis of RpoS-mediated gene expression in Escherichia coli K-12
-
Patten, C. L., M. G. Kirchhof, M. R. Schertzberg, R. A. Morton, and H. E. Schellhorn. 2004. Microarray analysis of RpoS-mediated gene expression in Escherichia coli K-12. Mol. Genet. Genomics 272:580-591.
-
(2004)
Mol. Genet. Genomics
, vol.272
, pp. 580-591
-
-
Patten, C.L.1
Kirchhof, M.G.2
Schertzberg, M.R.3
Morton, R.A.4
Schellhorn, H.E.5
-
56
-
-
24944477416
-
A switch from high-fidelity to error-prone DNA double-strand break repair underlies stress-induced mutation
-
Ponder, R. G., N. C. Fonville, and S. M. Rosenberg. 2005. A switch from high-fidelity to error-prone DNA double-strand break repair underlies stress-induced mutation. Mol. Cell 19:791-804.
-
(2005)
Mol. Cell
, vol.19
, pp. 791-804
-
-
Ponder, R.G.1
Fonville, N.C.2
Rosenberg, S.M.3
-
57
-
-
0036267327
-
S) protein in Escherichia coli is active in vivo and exhibits normal environmental regulation even in the absence of rpoS transcriptional and translational control signals
-
S) protein in Escherichia coli is active in vivo and exhibits normal environmental regulation even in the absence of rpoS transcriptional and translational control signals. J. Bacteriol. 184:3167-3175.
-
(2002)
J. Bacteriol.
, vol.184
, pp. 3167-3175
-
-
Rajkumari, K.1
Gowrishankar, J.2
-
58
-
-
58549091852
-
Role of single-strand DNA 3′-5′ exonuclease ExoI and nuclease SbcCD in stationary-phase mutation in Escherichia coli K-12
-
Ramirez-Santos, J., V. Garcia-Mata, S. Poggio, L. Camarena, and M. C. Gomez-Eichelmann. 2009. Role of single-strand DNA 3′-5′ exonuclease ExoI and nuclease SbcCD in stationary-phase mutation in Escherichia coli K-12. Arch. Microbiol. 191:185-190.
-
(2009)
Arch. Microbiol.
, vol.191
, pp. 185-190
-
-
Ramirez-Santos, J.1
Garcia-Mata, V.2
Poggio, S.3
Camarena, L.4
Gomez-Eichelmann, M.C.5
-
59
-
-
0041935939
-
-
U.S. National Institutes of Health, Bethesda, MD
-
Rasband, W. S. 1997. ImageJ. U.S. National Institutes of Health, Bethesda, MD.
-
(1997)
ImageJ.
-
-
Rasband, W.S.1
-
60
-
-
0036785341
-
Induction of a DNA nickase in the presence of its target site stimulates adaptive mutation in Escherichia coli
-
Rodriguez, C., J. Tompkin, J. Hazel, and P. L. Foster. 2002. Induction of a DNA nickase in the presence of its target site stimulates adaptive mutation in Escherichia coli. J. Bacteriol. 184:5599-5608.
-
(2002)
J. Bacteriol.
, vol.184
, pp. 5599-5608
-
-
Rodriguez, C.1
Tompkin, J.2
Hazel, J.3
Foster, P.L.4
-
61
-
-
0026470403
-
On fluctuation analysis: A new, simple and efficient method for computing the expected number of mutants
-
Sarkar, S., W. T. Ma, and G. H. Sandri. 1992. On fluctuation analysis: a new, simple and efficient method for computing the expected number of mutants. Genetica 85:173-179.
-
(1992)
Genetica
, vol.85
, pp. 173-179
-
-
Sarkar, S.1
Ma, W.T.2
Sandri, G.H.3
-
62
-
-
0029119263
-
Regulation of hydroperoxidase (catalase) expression in Escherichia coli
-
Schellhorn, H. E. 1995. Regulation of hydroperoxidase (catalase) expression in Escherichia coli. FEMS Microbiol. Lett. 131:113-119.
-
(1995)
FEMS Microbiol. Lett.
, vol.131
, pp. 113-119
-
-
Schellhorn, H.E.1
-
63
-
-
0023780699
-
Transcriptional regulation of katE in Escherichia coli K-12
-
Schellhorn, H. E., and H. M. Hassan. 1988. Transcriptional regulation of katE in Escherichia coli K-12. J. Bacteriol. 170:4286-4292.
-
(1988)
J. Bacteriol.
, vol.170
, pp. 4286-4292
-
-
Schellhorn, H.E.1
Hassan, H.M.2
-
64
-
-
77954417926
-
RpoS, the stress-response sigma factor, plays a dual role in the regulation of Escherichia coli's error-prone DNA polymerase IV
-
Storvik, K. A., and P. L. Foster. 2010. RpoS, the stress-response sigma factor, plays a dual role in the regulation of Escherichia coli's error-prone DNA polymerase IV. J. Bacteriol. 192:3639-3644.
-
(2010)
J. Bacteriol.
, vol.192
, pp. 3639-3644
-
-
Storvik, K.A.1
Foster, P.L.2
-
65
-
-
0034462969
-
Role of the dinB gene product in spontaneous mutation in Escherichia coli with an impaired replicative polymerase
-
Strauss, B. S., R. Roberts, L. Francis, and P. Pouryazdanparast. 2000. Role of the dinB gene product in spontaneous mutation in Escherichia coli with an impaired replicative polymerase. J. Bacteriol. 182:6742-6750.
-
(2000)
J. Bacteriol.
, vol.182
, pp. 6742-6750
-
-
Strauss, B.S.1
Roberts, R.2
Francis, L.3
Pouryazdanparast, P.4
-
66
-
-
22644438135
-
Polyphosphate kinase regulates errorprone replication by DNA polymerase IV in Escherichia coli
-
Stumpf, J. D., and P. L. Foster. 2005. Polyphosphate kinase regulates errorprone replication by DNA polymerase IV in Escherichia coli. Mol. Microbiol. 57:751-761.
-
(2005)
Mol. Microbiol.
, vol.57
, pp. 751-761
-
-
Stumpf, J.D.1
Foster, P.L.2
-
68
-
-
53849083443
-
Overproduction of Escherichia coli DNA polymerase DinB (Pol IV) inhibits replication fork progression and is lethal
-
Uchida, K., et al. 2008. Overproduction of Escherichia coli DNA polymerase DinB (Pol IV) inhibits replication fork progression and is lethal. Mol. Microbiol. 70:608-622.
-
(2008)
Mol. Microbiol.
, vol.70
, pp. 608-622
-
-
Uchida, K.1
-
69
-
-
10044241658
-
RpoS-regulated genes of Escherichia coli identified by random lacZ fusion mutagenesis
-
Vijayakumar, S. R., M. G. Kirchhof, C. L. Patten, and H. E. Schellhorn. 2004. RpoS-regulated genes of Escherichia coli identified by random lacZ fusion mutagenesis. J. Bacteriol. 186:8499-8507.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 8499-8507
-
-
Vijayakumar, S.R.1
Kirchhof, M.G.2
Patten, C.L.3
Schellhorn, H.E.4
-
70
-
-
70450198154
-
Distinct beta-clamp interactions govern the activities of the y family Pol IV DNA polymerase
-
Wagner, J., H. Etienne, R. P. Fuchs, A. Cordonnier, and D. Burnouf. 2009. Distinct beta-clamp interactions govern the activities of the Y family Pol IV DNA polymerase. Mol. Microbiol. 74:1143-1151.
-
(2009)
Mol. Microbiol.
, vol.74
, pp. 1143-1151
-
-
Wagner, J.1
Etienne, H.2
Fuchs, R.P.3
Cordonnier, A.4
Burnouf, D.5
-
71
-
-
0033880695
-
Escherichia coli DNA polymerase IV mutator activity: Genetic requirements and mutational specificity
-
Wagner, J., and T. Nohmi. 2000. Escherichia coli DNA polymerase IV mutator activity: genetic requirements and mutational specificity. J. Bacteriol. 182:4587-4595.
-
(2000)
J. Bacteriol.
, vol.182
, pp. 4587-4595
-
-
Wagner, J.1
Nohmi, T.2
-
72
-
-
14244256556
-
s-dependent genes, promoters, and sigma factor selectivity
-
S-dependent genes, promoters, and sigma factor selectivity. J. Bacteriol. 187:1591-1603.
-
(2005)
J. Bacteriol.
, vol.187
, pp. 1591-1603
-
-
Weber, H.1
Polen, T.2
Heuveling, J.3
Wendisch, V.F.4
Hengge, R.5
-
73
-
-
77957316728
-
Interplay of DNA repair homologous recombination and DNA polymerases in resistance to the DNA damaging agent 4-nitroquinoline-1-oxide in Escherichia coli
-
Williams, A. B., K. M. Hetrick, and P. L. Foster. 2010. Interplay of DNA repair, homologous recombination, and DNA polymerases in resistance to the DNA damaging agent 4-nitroquinoline-1-oxide in Escherichia coli. DNA Repair 9:1090-1097.
-
(2010)
DNA Repair
, vol.9
, pp. 1090-1097
-
-
Williams, A.B.1
Hetrick, K.M.2
Foster, P.L.3
-
74
-
-
35548936423
-
The Escherichia coli histone-like protein HU has a role in stationary phase adaptive mutation
-
Williams, A. B., and P. L. Foster. 2007. The Escherichia coli histone-like protein HU has a role in stationary phase adaptive mutation. Genetics 177:723-735.
-
(2007)
Genetics
, vol.177
, pp. 723-735
-
-
Williams, A.B.1
Foster, P.L.2
-
75
-
-
0017037398
-
Ultraviolet mutagenesis and inducible DNA repair in Escherichia coli
-
Witkin, E. M. 1976. Ultraviolet mutagenesis and inducible DNA repair in Escherichia coli. Bacteriol. Rev. 40:869-907.
-
(1976)
Bacteriol. Rev.
, vol.40
, pp. 869-907
-
-
Witkin, E.M.1
-
76
-
-
1642267937
-
Polymerases leave fingerprints: Analysis of the mutational spectrum in Escherichia coli rpoB to assess the role of polymerase IV in spontaneous mutation
-
Wolff, E., M. Kim, K. Hu, H. Yang, and J. H. Miller. 2004. Polymerases leave fingerprints: analysis of the mutational spectrum in Escherichia coli rpoB to assess the role of polymerase IV in spontaneous mutation. J. Bacteriol. 186:2900-2905.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 2900-2905
-
-
Wolff, E.1
Kim, M.2
Hu, K.3
Yang, H.4
Miller, J.H.5
-
77
-
-
0021184799
-
Monoclonal antibodies specific for the alpha subunit of the Escherichia coli DNA polymerase III holoenzyme
-
Wu, Y. H., M. A. Franden, J. R. Hawker, Jr., and C. S. McHenry. 1984. Monoclonal antibodies specific for the alpha subunit of the Escherichia coli DNA polymerase III holoenzyme. J. Biol. Chem. 259:12117-12122.
-
(1984)
J. Biol. Chem.
, vol.259
, pp. 12117-12122
-
-
Wu, Y.H.1
Franden, M.A.2
Hawker Jr., J.R.3
McHenry, C.S.4
-
78
-
-
0037172966
-
SOSinduced DNA polymerases enhance long-term survival and evolutionary fitness
-
Yeiser, B., E. D. Pepper, M. F. Goodman, and S. E. Finkel. 2002. SOSinduced DNA polymerases enhance long-term survival and evolutionary fitness. Proc. Natl. Acad. Sci. U. S. A. 99:8737-8741.
-
(2002)
Proc. Natl. Acad. Sci. U. S. A.
, vol.99
, pp. 8737-8741
-
-
Yeiser, B.1
Pepper, E.D.2
Goodman, M.F.3
Finkel, S.E.4
|