Advances in pectinolytic enzymes, genes and regulation in aspergillus

Pectins and Pectinases

Volumn , Issue , 2009, Pages 101-113

  Gruben, B S ^a   De Vries, R P ^a  

^a UTRECHT UNIVERSITY   (Netherlands)

Author keywords

Aspergillus; Genomics; Novel enzymes; Novel genes; Regulation

Indexed keywords

EID: 78651472202     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.3920/978-90-8686-677-9     Document Type: Chapter

References (31)

1. Benoit, I., E.G. Danchin, R.J. Bleichrodt and R.P. de Vries, 2008. Biotechnological applications and potential of fungal feruloyl esterases based on prevalence, classification and biochemical diversity. Biotechnol Lett 30: 387-396.
2. Contreras Esquivel, J.C. and C.E. Voget, 2004. Purification and partial characterization of an acidic polygalacturonase from Aspergillus kawachii. J Biotechnol 110: 21-28.
3. Coutinho, P.M. and B. Henrissat, 1999. Carbohydrate-active enzymes: an integrated database approach. In: H.J. Gilbert, G.J. Davies, B. Henrissat and B. Svensson (eds.) Rec. Adv. Carbohydr. Bioeng. The Royal Society of Chemistry. Cambridge. pp.3-14.
4. Coutinho, P.M., M.R. Andersen, K. Kolenova, P.A. vanKuyk, I. Benoit, B.S. Gruben, B. Trejo-Aguilar, H. Visser, P. van Solingen, T. Pakula, B. Seiboth, E. Battaglia, G. Aguilar-Osorio, J.F. Jong, R.A. Ohm, M. Aguilar, B. Henrissat, J. Nielsen, H. Stålbrand and R.P. de Vries, 2009. Postgenomic insights into the plant polysaccharide degradation potential of Aspergillus nidulans and comparison to Aspergillus niger and Aspergillus oryzae. Fung Genet Biol 46: S161-S169.
5. De Groot, M.J.L., P.J.I. van de Vondervoort, R.P. de Vries, P.A. vanKuyk, G.J.G. Ruijter and J. Visser, 2003. Isolation and characterization of two specific regulatory Aspergillus niger mutants shows antagonistic regulation of arabinan and xylan metabolism. Microbiol 149: 1183-1191.
6. De Vries, R.P., 2003. Regulation of Aspergillus genes encoding plant cell wall polysaccharide degrading enzymes; relevance for industrial production. Appl Microbiol Biotechnol 61: 10-20.
7. De Vries, R.P. and J. Visser, 1999. Regulation of the feruloyl esterase (faeA) gene from Aspergillus niger. Appl Environ Microbiol 65: 5500-5503.
8. De Vries, R.P. and J. Visser, 2001. Aspergillus enzymes involved in degradation of plant cell wall polysaccharides. Microb Mol Biol Rev 65: 497-522.
9. De Vries, R.P., H.C. van den Broeck, E. Dekkers, P. Manzanares, L.H. de Graaff and J. Visser, 1999. Differential expression of three α-galactosidase genes and a single β-galactosidase gene from Apergillus niger. Appl Environ Microbiol 65: 2453-2460.
10. De Vries, R.P., J. Jansen, G. Aguilar, L. Parenicová, J.A.E. Benen, V. Joosten, F. Wulfert and J. Visser, 2002a. Expression profiling of pectinolytic genes from Aspergillus niger. FEBS Lett 530: 41-47.
11. De Vries, R.P., H.C.M. Kester, P.A. vanKuyk and J. Visser, 2002b. The Aspergillus niger faeB gene encodes a second feruloyl esterase involved in pectin and xylan degradation, and is specifically induced on aromatic compounds. Biochem J 363: 377-386.
12. De Vries, R.P., C. van Grieken, P.A. vanKuyk and H.A.B. Wösten, 2005. The value of genome sequences in the rapid identification of novel genes encoding specific plant cell wall degrading enzymes. Curr Genom 6: 157-187.
13. Diaz, M., A.M. Pedregosa, J.R. de Lucas, S. Torralba, I.F. Monistrol and F. Laborda, 1996. Purification and properties of beta-galactosidase from Aspergillus nidulans. Microbiologia 12: 585-592.
14. Dowzer, C.E.A. and J.M. Kelly, 1991. Analysis of the creA gene, a regulator of carbon catabolite repression in Aspergillus nidulans. Mol Cell Biol 11: 5701-5709.
15. Gallego, M.V., B. Pinan-Lucarré, D. Ramon and S. Valles, 2001. Purification and Characterization of an α-L-Rhamnosidase from Aspergillus terreus of Interest in Winemaking. J Food Sci 66: 204-209.
16. Guo, C.-T., W.-M. Xue, T.-B. Chen, W.-H. Deng and P.-F. Rao, 2002. Purification and partial characterization of an endo-polygalacturonase from Aspergillus niger. J Food Biochem 26: 253-265.
17. Kaneko, S., M. Arimoto, M. Ohba, H. Kobayashi, T. Ishii and I. Kusakabe, 1998. Purification and substrate specificities of two alpha-L-arabinofuranosidases from Aspergillus awamori IFO 4033. Appl Environ Microbiol 64: 4021-4027.
18. Koseki, T., M. Okuda, S. Sudoh, Y. Kizaki, K. Iwano, I. Aramaki and H. Matsuzawa, 2003. Role of two alpha-L-arabinofuranosidases in arabinoxylan degradation and characteristics of the encoding genes from shochu koji molds, Aspergillus kawachii and Aspergillus awamori. J Biosci Bioeng 96: 232-241.
19. Manzanares, P., H.C. van den Broeck, L.H. de Graaff and J. Visser, 2001. Purification and characterization of two different alpha-L-rhamnosidases, RhaA and RhaB, from Aspergillus aculeatus. Appl Environ Microbiol 67: 2230-2234.
20. Martens-Uzunova, E.S., J.S. Zandleven, J.A.E. Benen, H. Awad, H.J. Kools, G. Beldman, A.G.J. Voragen, J.A. van den Berg and P.J. Schaap, 2006. A new group of exo-acting family 28 glycoside hydrolases of Aspergillus niger that are involved in pectin degradation. Biochem J 400: 43-52.
21. Nagai, M., T. Katsuragi, T. Terashita, K. Yoshikawa and T. Sakai, 2000. Purification and characterization of an endo-polygalacturonase. From Aspergillus awamori. Biosci Biotechnol Biochem 64: 1729-1732.
22. Parenicová, L., J.A.E. Benen, R.A. Samson and J. Visser, 1997. Evaluation of RFLP analysis of the classification of selected black aspergilli. Mycol Res 101: 810-814.
23. Pel, H.J., J.H. de Winde, D.B. Archer, P.S. Dyer, G. Hofmann, P.J. Schaap, G. Turner, R.P. de Vries, R. Albang, K. Albermann, M.R. Andersen, J.D. Bendtsen, J.A.E. Benen, M. van den Berg, S. Breestraat, M.X. Caddick, R. Contreras, M. Cornell, P.M. Coutinho, E. Danchin, G,J,, A.J.M. Debets, P. Dekker, P.W.M. van Dijck, A. van Dijk, L. Dijkhuizen, A.J.M. Driessen, C. d'Enfert, S. Geysens, C. Goosen, G.S.P. Groot, P.W.J. de Groot, T. Guillemette, B. Henrissat, M. Herweijer, J.P.T.W. van den Hombergh, C.A.M.J.J. van den Hondel, R.T.J.M. van der Heijden, R.M. van der Kaaij, F.M. Klis, H.J. Kools, C.P. Kubicek, P.A. vanKuyk, J. Lauber, X. Lu, M.J.E.C. van der Maarel, R. Meulenberg, H. Menke, A.M. Mortimer, J. Nielsen, S.G. Oliver, M. Olsthoorn, K. Pal, N.N.M.E. van Peij, A.F.J. Ram, U. Rinas, J.A. Roubos, C.M.J. Sagt, M. Schmoll, J. Sun, D. Ussery, J. Varga, W. Vervecken, P.J.I. van de Vondervoort, H. Wedler, H.A.B. Wösten, A.-P. Zeng, A.J.J. van Ooyen, J. Visser and H. Stam, 2007. Genome sequence of Aspergillus niger strain CBS 513.88: a versatile cell factory. Nature Biotechnol 25: 221-231.
24. Saad, R.R., 2004. Purification and some properties of β-galactosidase from Aspergillus japonicus. Annals Microbiol 54: 299-306.
25. Sakamoto, T., E. Bonnin, B. Quemener and J.F. Thibault, 2002. Purification and characterisation of two exo-polygalacturonases from Aspergillus niger able to degrade xylogalacturonan and acetylated homogalacturonan. Biochim Biophys Acta 1572: 10-18.
26. Semenova, M.V., S.G. Grishutin, A.V. Gusakov, O.N. Okunev and A.P. Sinitsyn, 2003. Isolation and properties of pectinases from the fungus Aspergillus japonicus. Biochemistry (Mosc) 68: 559-569.
27. Shin, H.D. and R.R. Chen, 2007. A type B feruloyl esterase from Aspergillus nidulans with broad pH applicability. Appl Microbiol Biotechnol 73: 1323-1330.
28. Singh, S.A. and A.G. Appu Rao, 2002. A simple fractionation protocol for, and a comprehensive study of the molecular properties of, two major endopolygalacturonases from Aspergillus niger. Biotechnol Appl Biochem 35: 115-123.
29. Suykerbuyk, M.E.G., H.C.M. Kester, P.J. Schaap, H. Stam, W. Musters and J. Visser, 1997. Cloning and characterization of two rhamnogalacturonan hydrolase genes from Aspergillus niger. Appl Environ Microbiol 63: 2507-2515.
30. Voragen, F., H. Schols and R. Visser (eds.), 2003. Advances in pectin and pectinase research. Kluwer Academic Publishers, Dordrecht, the Netherlands.
31. Yadav, S., P.K. Yadav, D. Yadav and K.D.S. Yadav, 2008. Purification and characterization of an alkaline pectin lyase from Aspergillus flavus. Process Biochem 43: 547-552.