Structural basis of acyl-homoserine lactone-dependent signaling

Chemical Reviews

Volumn 111, Issue 1, 2011, Pages 68-85

  Churchill, Mair E A ^a   Chen, Lingling ^b  

^a UNIVERSITY OF COLORADO SCHOOL OF MEDICINE   (United States)

^b INDIANA UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACYL-HOMOSERINE LACTONES; CELL DENSITY; HOMOSERINE LACTONES; LACTONIZATION; METHIONINE MOIETIES; MOLECULAR UNDERSTANDING; NEUTRAL LIPID; PANTOEA; PROTEOBACTERIA; REACTION MECHANISM; RHODOPSEUDOMONAS PALUSTRIS; SIGNALING MOLECULES; STRUCTURAL BASIS; SYNTHASE GENE; SYNTHASES;

AMINO ACIDS; SIGNALING; SYNTHESIS (CHEMICAL);

CYCLIZATION;

BACTERIAL PROTEIN; DNA; GAMMA BUTYROLACTONE DERIVATIVE; LIGASE; LUXR AUTOINDUCER BINDING PROTEINS; N ACYLHOMOSERINE LACTONE SYNTHASE; N-ACYLHOMOSERINE LACTONE SYNTHASE; REPRESSOR PROTEIN; TRAM PROTEIN, BACTERIAL; TRANSACTIVATOR PROTEIN;

ARTICLE; CHEMISTRY; METABOLISM; PROTEIN BINDING; PROTEIN TERTIARY STRUCTURE; SIGNAL TRANSDUCTION;

ACYL-BUTYROLACTONES; BACTERIAL PROTEINS; DNA; LIGASES; PROTEIN BINDING; PROTEIN STRUCTURE, TERTIARY; REPRESSOR PROTEINS; SIGNAL TRANSDUCTION; TRANS-ACTIVATORS;

EID: 78651399983     PISSN: 00092665     EISSN: 15206890     Source Type: Journal    
DOI: 10.1021/cr1000817     Document Type: Article

References (139)

1. Nealson, K. H., Platt, T., and Hastings, J. W. J. Bacteriol. 1970, 104, 313
2. Eberhard, A., Burlingame, A. L., Eberhard, C., Kenyon, G. L., Nealson, K. H., and Oppenheimer, N. J. Biochemistry 1981, 20, 2444
3. Nealson, K. H. Arch. Microbiol. 1977, 112, 73
4. Fuqua, C. and Winans, S. C. J. Bacteriol. 1996, 178, 435
5. Chemical Communication among Bacteria; American Microbiology Association Press: Washington, DC, 2008.
6. Marketon, M. M., Gronquist, M. R., Eberhard, A., and Gonzalez, J. E. J. Bacteriol. 2002, 184, 5686
7. Fuqua, C. and Eberhard, A. In Cell-Cell Communication in Bacteria; Dunny, G. and Winans, S. C., Eds.; American Microbiology Association Press: Washington, DC, 1999.
8. Thiel, V., Kunze, B., Verma, P., Wagner-Dobler, I., and Schulz, S. ChemBioChem 2009, 10, 1861
9. Schaefer, A. L., Val, D. L., Hanzelka, B. L., Cronan, J. E., Jr., and Greenberg, E. P. Proc. Natl. Acad. Sci. U.S.A. 1996, 93, 9505
10. Kaplan, H. B. and Greenberg, E. P. J. Bacteriol. 1985, 163, 121
11. Pearson, J. P., Van Delden, C., and Iglewski, B. H. J. Bacteriol. 1999, 181, 1203
12. Stevens, A. M. and Greenberg, E. P. In Cell-Cell Communication in Bacteria; Dunny, G. and Winans, S. C., Eds.; American Microbiology Association Press: Washington, DC, 1999.
13. Freeman, J. A., Lilley, B. N., and Bassler, B. L. Mol. Microbiol. 2000, 35, 139
14. Shadel, G. S. and Baldwin, T. O. J. Bacteriol. 1991, 173, 568
15. Wagner, V. E., Bushnell, D., Passador, L., Brooks, A. I., and Iglewski, B. H. J. Bacteriol. 2003, 185, 2080
16. von Bodman, S. B., Ball, J. K., Faini, M. A., Herrera, C. M., Minogue, T. D., Urbanowski, M. L., and Stevens, A. M. J. Bacteriol. 2003, 185, 7001
17. Schuster, M., Lostroh, C. P., Ogi, T., and Greenberg, E. P. J. Bacteriol. 2003, 185, 2066
18. Minogue, T. D., Wehland-von Trebra, M., Bernhard, F., and von Bodman, S. B. Mol. Microbiol. 2002, 44, 1625
19. Fuqua, C., Parsek, M. R., and Greenberg, E. P. Annu. Rev. Genet. 2001, 35, 439
20. Waters, C. M. and Bassler, B. L. Annu. Rev. Cell Dev. Biol. 2005, 21, 319
21. Whitehead, N. A., Barnard, A. M., Slater, H., Simpson, N. J., and Salmond, G. P. FEMS Microbiol. Rev. 2001, 25, 365
22. Eberl, L. Int. J. Med. Microbiol. 2006, 296, 103
23. Beck von Bodman, S. and Farrand, S. K. J. Bacteriol. 1995, 177, 5000
24. Zhang, L., Murphy, P. J., Kerr, A., and Tate, M. E. Nature 1993, 362, 446
25. Watson, W. T., Minogue, T. D., Val, D. L., Beck von Bodman, S., and Churchill, M. E. A. Mol. Cell 2002, 9, 685
26. Brader, G., Sjoblom, S., Hyytiainen, H., Sims-Huopaniemi, K., and Palva, E. T. J. Biol. Chem. 2005, 280, 10403
27. Lutter, E., Lewenza, S., Dennis, J. J., Visser, M. B., and Sokol, P. A. Infect. Immun. 2001, 69, 4661
28. Mohamed, N. M., Cicirelli, E. M., Kan, J., Chen, F., Fuqua, C., and Hill, R. T. Environ. Microbiol. 2008, 10, 75
29. Gotschlich, A., Huber, B., Geisenberger, O., Togl, A., Steidle, A., Riedel, K., Hill, P., Tummler, B., Vandamme, P., Middleton, B., Camara, M., Williams, P., Hardman, A., and Eberl, L. Syst. Appl. Microbiol. 2001, 24, 1
30. Duerkop, B. A., Ulrich, R. L., and Greenberg, E. P. J. Bacteriol. 2007, 189, 5034
31. Duerkop, B. A., Herman, J. P., Ulrich, R. L., Churchill, M. E., and Greenberg, E. P. J. Bacteriol. 2008, 190, 5137
32. Beck von Bodman, S., Majerczak, D. R., and Coplin, D. L. Proc. Natl. Acad. Sci. U.S.A. 1998, 95, 7687
33. De Kievit, T. R., Kakai, Y., Register, J. K., Pesci, E. C., and Iglewski, B. H. FEMS Microbiol. Lett. 2002, 212, 101
34. Gould, T. A., Herman, J., Krank, J., Murphy, R. C., and Churchill, M. E. A. J. Bacteriol. 2006, 188, 773
35. De Kievit, T. R., Gillis, R., Marx, S., Brown, C., and Iglewski, B. H. Appl. Environ. Microbiol. 2001, 67, 1865
36. Brencic, A. and Winans, S. C. Microbiol. Mol. Biol. Rev. 2005, 69, 155
37. Schuster, M. and Peter Greenberg, E. Int. J. Med. Microbiol. 2006, 296, 73
38. Seed, C. P., Passador, L., and Iglewski, B. H. J. Bacteriol. 1995, 177, 654
39. Michael, B., Smith, J. N., Swift, S., Heffron, F., and Ahmer, B. M. J. Bacteriol. 2001, 183, 5733
40. Hwang, I., Cook, D. M., and Farrand, S. K. J. Bacteriol. 1995, 177, 449
41. Luo, Z. Q., Qin, Y., and Farrand, S. K. J. Biol. Chem. 2000, 275, 7713
42. Piper, K. R. and Farrand, S. K. J. Bacteriol. 2000, 182, 1080
43. Byers, J. T., Lucas, C., Salmond, G. P., and Welch, M. J. Bacteriol. 2002, 184, 1163
44. Yates, E. A., Philipp, B., Buckley, C., Atkinson, S., Chhabra, S. R., Sockett, R. E., Goldner, M., Dessaux, Y., Camara, M., Smith, H., and Williams, P. Infect. Immun. 2002, 70, 5635
45. Nachin, L. and Barras, F. Mol. Plant-Microbe Interact. 2000, 13, 882
46. Atkinson, S., Throup, J. P., Stewart, G., and Williams, P. Mol. Microbiol. 1999, 33, 1267
47. Kirwan, J. P., Gould, T. A., Schweizer, H. P., Bearden, S. W., Murphy, R. C., and Churchill, M. E. J. Bacteriol. 2006, 188, 784
48. Sio, C. F., Otten, L. G., Cool, R. H., Diggle, S. P., Braun, P. G., Bos, R., Daykin, M., Camara, M., Williams, P., and Quax, W. J. Infect. Immun. 2006, 74, 1673
49. Huang, J. J., Petersen, A., Whiteley, M., and Leadbetter, J. R. Appl. Environ. Microbiol. 2006, 72, 1190
50. Leadbetter, J. R. and Greenberg, E. P. J. Bacteriol. 2000, 182, 6921
51. Dong, Y.-H., Wang, L.-H., Xu, J.-L., Zhang, H.-B., Zhang, X.-F., and Zhang, L.-H. Nature 2001, 411, 813
52. Roche, D. M., Byers, J. T., Smith, D. S., Glansdorp, F. G., Spring, D. R., and Welch, M. Microbiology 2004, 150, 2023
53. Huang, J. J., Han, J. I., Zhang, L. H., and Leadbetter, J. R. Appl. Environ. Microbiol. 2003, 69, 5941
54. Schaefer, A. L., Greenberg, E. P., Oliver, C. M., Oda, Y., Huang, J. J., Bittan-Banin, G., Peres, C. M., Schmidt, S., Juhaszova, K., Sufrin, J. R., and Harwood, C. S. Nature 2008, 454, 595
55. Boerjan, W., Ralph, J., and Baucher, M. Annu. Rev. Plant Biol. 2003, 54, 519
56. Cooley, M., Chhabra, S. R., and Williams, P. Chem. Biol. 2008, 15, 1141
57. Churchill, M. E. and Herman, J. P. In Chemical Communication among Bacteria; Winans, S. C. and Bassler, B. L., Eds.; American Microbiology Association: Washington, DC, 2008.
58. Engebrecht, J. and Silverman, M. Proc. Natl. Acad. Sci. U.S.A. 1984, 81, 4154
59. Pearson, J. P., Passador, L., Iglewski, B. H., and Greenberg, E. P. Proc. Natl. Acad. Sci. U.S.A. 1995, 92, 1490
60. Hanzelka, B. L. and Greenberg, E. P. J. Bacteriol. 1996, 178, 5291
61. Moré, M. I., Finger, L. D., Stryker, J. L., Fuqua, C., Eberhard, A., and Winans, S. C. Science 1996, 272, 1655
62. Val, D. L. and Cronan, J. E. J. J. Bacteriol. 1998, 180, 2644
63. Parsek, M. R., Val, D. L., Hanzelka, B. L., Cronan, J. E. J., and Greenberg, E. P. Proc. Natl. Acad. Sci. U.S.A. 1999, 96, 4360
64. Bassler, B. L., Wright, M., Showalter, R. E., and Silverman, M. R. Mol. Microbiol. 1993, 9, 773
65. Gilson, L., Kuo, A., and Dunlap, P. V. J. Bacteriol. 1995, 177, 6946
66. Milton, D. L., Chalker, V. J., Kirke, D., Hardman, A., Camara, M., and Williams, P. J. Bacteriol. 2001, 183, 3537
67. Hanzelka, B. L., Parsek, M. R., Val, D. L., Dunlap, P. V., Cronan, J. E. J., and Greenberg, E. P. J. Bacteriol. 1999, 181, 5766
68. Laue, B. E., Jiang, Y., Chhabra, S. R., Jacob, S., Stewart, G. S., Hardman, A., Downie, J. A., O'Gara, F., and Williams, P. Microbiology 2000, 146 (Pt 10) 2469
69. Burton, E. O., Read, H. W., Pellitteri, M. C., and Hickey, W. J. Appl. Environ. Microbiol. 2005, 71, 4906
70. Cullinane, M., Baysse, C., Morrissey, J. P., and O'Gara, F. Microbiology 2005, 151, 3071
71. Shih, G. C., Kahler, C. M., Swartley, J. S., Rahman, M. M., Coleman, J., Carlson, R. W., and Stephens, D. S. Mol. Microbiol. 1999, 32, 942
72. Lerat, E. and Moran, N. A. Mol. Biol. Evol. 2004, 21, 903
73. Parsek, M. R., Schaefer, A. L., and Greenberg, E. P. Mol. Microbiol. 1997, 26, 301
74. Hanzelka, B. L., Stevens, A. M., Parsek, M. R., Crone, T. J., and Greenberg, E. P. J. Bacteriol. 1997, 179, 4882
75. Gould, T. A., Schweizer, H. P., and Churchill, M. E. A. Mol. Microbiol. 2004, 53, 1135
76. Watson, W. T., Murphy, F. V., Gould, T. A., Jambeck, P., Val, D. L., Cronan, J. E., Beck von Bodman, S., and Churchill, M. E. A. Acta Crystallogr. 2001, D57, 1945
77. Gould, T. A., Watson, W. T., Choi, S. H., Schweizer, H. P., and Churchill, M. E. A. Acta Crystallogr. 2004, D60, 518
78. Clements, A. and Marmorstein, R. Methods Enzymol. 2003, 371, 545
79. Van Wagoner, R. M. and Clardy, J. Structure 2006, 14, 1425
80. Churchill, M. E. A. Structure 2006, 14, 1342
81. Rojas, J. R., Trievel, R. C., Zhou, J., Mo, Y., Berger, S. L., Allis, C. D., and Marmorstein, R. Nature 1999, 401, 93
82. Shaw, P. D., Ping, G., Daly, S. L., Cha, C., Cronan, J. E. J., Rinehart, K. L., and Farrand, S. K. Proc. Natl. Acad. Sci. U.S.A. 1997, 94, 6036
83. Pearson, J. P., Pesci, E. C., and Iglewski, B. H. J. Bacteriol. 1997, 179, 5756
84. Khan, S. R., Mavrodi, D. V., Jog, G. J., Suga, H., Thomashow, L. S., and Farrand, S. K. J. Bacteriol. 2005, 187, 6517
85. Chakrabarti, S. and Sowdhamini, R. Protein Eng. 2003, 16, 271
86. Hickman, A. B., Namboodiri, M. A., Klein, D. C., and Dyda, F. Cell 1999, 97, 361
87. Tanner, K. G., Trievel, R. C., Huo, M.-H., Howard, R. M., Berger, S. L., Allis, C. D., Marmorstein, R., and Denu, J. M. J. Biol. Chem. 1999, 274, 18157
88. Berndsen, C. E. and Denu, J. M. Curr. Opin. Struct. Biol. 2008, 18, 682
89. Yan, Y., Harper, S., Speicher, D. W., and Marmorstein, R. Nat. Struct. Biol. 2002, 9, 862
90. Raychaudhuri, A., Jerga, A., and Tipton, P. A. Biochemistry 2005, 44, 2974
91. Raychaudhuri, A., Tullock, A., and Tipton, P. A. Biochemistry 2008, 47, 2893
92. Engebrecht, J., Nealson, K., and Silverman, M. Cell 1983, 32, 773
93. Eberhard, A. J. Bacteriol. 1972, 109, 1101
94. Fuqua, W. C., Winans, S. C., and Greenberg, E. P. J. Bacteriol. 1994, 176, 269
95. Kaplan, H. B. and Greenberg, E. P. Proc. Natl. Acad. Sci. U.S.A. 1987, 84, 6639
96. Gambello, M. J. and Iglewski, B. H. J. Bacteriol. 1991, 173, 3000
97. Passador, L., Cook, J. M., Gambello, M. J., Rust, L., and Iglewski, B. H. Science 1993, 260, 1127
98. Ochsner, U. A., Koch, A. K., Fiechter, A., and Reiser, J. J. Bacteriol. 1994, 176, 2044
99. Latifi, A., Winson, M. K., Foglino, M., Bycroft, B. W., Stewart, G. S., Lazdunski, A., and Williams, P. Mol. Microbiol. 1995, 17, 333
100. Fuqua, W. C. and Winans, S. C. J. Bacteriol. 1994, 176, 2796
101. Piper, K. R., Beck von Bodman, S., and Farrand, S. K. Nature 1993, 362, 448
102. Schu, D. J., Carlier, A. L., Jamison, K. P., von Bodman, S., and Stevens, A. M. J. Bacteriol. 2009, 191, 7402
103. Stevens, A. M., Dolan, K. M., and Greenberg, E. P. Proc. Natl. Acad. Sci. U.S.A. 1994, 91, 12619
104. Zhu, J. and Winans, S. C. Proc. Natl. Acad. Sci. U.S.A. 1999, 96, 4832
105. Urbanowski, M. L., Lostroh, C. P., and Greenberg, E. P. J. Bacteriol. 2004, 186, 631
106. Yao, Y., Martinez-Yamout, M. A., Dickerson, T. J., Brogan, A. P., Wright, P. E., and Dyson, H. J. J. Mol. Biol. 2006, 355, 262
107. Bottomley, M. J., Muraglia, E., Bazzo, R., and Carfi, A. J. Biol. Chem. 2007, 282, 13592
108. Vannini, A., Volpari, C., Gargioli, C., Muraglia, E., Cortese, R., De Francesco, R., Neddermann, P., and Marco, S. D. EMBO J. 2002, 21, 4393
109. Zhang, R. G., Pappas, T., Brace, J. L., Miller, P. C., Oulmassov, T., Molyneaux, J. M., Anderson, J. C., Bashkin, J. K., Winans, S. C., and Joachimiak, A. Nature 2002, 417, 971
110. Chen, G., Jeffrey, P. D., Fuqua, C., Shi, Y., and Chen, L. Proc. Natl. Acad. Sci. U.S.A 2007, 104, 16474
111. Kiratisin, P., Tucker, K. D., and Passador, L. J. Bacteriol. 2002, 184, 4912
112. Luo, Z. Q., Smyth, A. J., Gao, P., Qin, Y., and Farrand, S. K. J. Biol. Chem. 2003, 278, 13173
113. Lamb, J. R., Patel, H., Montminy, T., Wagner, V. E., and Iglewski, B. H. J. Bacteriol. 2003, 185, 7129
114. Oger, P., Kim, K. S., Sackett, R. L., Piper, K. R., and Farrand, S. K. Mol. Microbiol. 1998, 27, 277
115. Zhu, J. and Winans, S. C. Mol. Microbiol. 1998, 27, 289
116. Chai, Y., Zhu, J., and Winans, S. C. Mol. Microbiol. 2001, 40, 414
117. Choi, S. H. and Greenberg, E. P. Proc. Natl. Acad. Sci. U.S.A. 1991, 88, 11115
118. Devine, J. H., Shadel, G. S., and Baldwin, T. O. Proc. Natl. Acad. Sci. U.S.A. 1989, 86, 5688
119. Egland, K. A. and Greenberg, E. P. Mol. Microbiol. 1999, 31, 1197
120. Whiteley, M. and Greenberg, E. P. J. Bacteriol. 2001, 183, 5529
121. Carlier, A. L. and von Bodman, S. B. J. Bacteriol. 2006, 188, 4581
122. White, C. E. and Winans, S. C. Mol. Microbiol. 2007, 64, 245
123. Antunes, L. C., Ferreira, R. B., Lostroh, C. P., and Greenberg, E. P. J. Bacteriol. 2008, 190, 4392
124. Fuqua, C., Burbea, M., and Winans, S. C. J. Bacteriol. 1995, 177, 1367
125. Hwang, I., Smyth, A. J., Luo, Z. Q., and Farrand, S. K. Mol. Microbiol. 1999, 34, 282
126. Marketon, M. M. and Gonzalez, J. E. J. Bacteriol. 2002, 184, 3466
127. Danino, V. E., Wilkinson, A., Edwards, A., and Downie, J. A. Mol. Microbiol. 2003, 50, 511
128. Vannini, A., Volpari, C., and Di Marco, S. J. Biol. Chem. 2004, 279, 24291
129. Swiderska, A., Berndtson, A. K., Cha, M. R., Li, L., Beaudoin, G. M., 3rd, Zhu, J., and Fuqua, C. J. Biol. Chem. 2001, 276, 49449
130. Chen, G., Malenkos, J. W., Cha, M. R., Fuqua, C., and Chen, L. Mol. Microbiol. 2004, 52, 1641
131. Chen, G., Wang, C., Fuqua, C., Zhang, L. H., and Chen, L. J. Bacteriol. 2006, 188, 8244
132. Qin, Y., Su, S., and Farrand, S. K. J. Biol. Chem. 2007, 282, 19979
133. Chen, G. Ph.D. Thesis, Indiana University, 2007.
134. Mol, C. D., Arvai, A. S., Sanderson, R. J., Slupphaug, G., Kavli, B., Krokan, H. E., Mosbaugh, D. W., and Tainer, J. A. Cell 1995, 82, 701
135. Liu, D., Ishima, R., Tong, K. I., Bagby, S., Kokubo, T., Muhandiram, D. R., Kay, L. E., Nakatani, Y., and Ikura, M. Cell 1998, 94, 573
136. Navarro-Aviles, G., Jimenez, M. A., Perez-Marin, M. C., Gonzalez, C., Rico, M., Murillo, F. J., Elias-Arnanz, M., and Padmanabhan, S. Mol. Microbiol. 2007, 63, 980
137. Masuda, S. and Bauer, C. E. Cell 2002, 110, 613
138. Smith, K. M., Bu, Y., and Suga, H. Chem. Biol. 2003, 10, 81
139. He, X., Chang, W., Pierce, D. L., Seib, L. O., Wagner, J., and Fuqua, C. J. Bacteriol. 2003, 185, 809