-
1
-
-
0141613696
-
The Pax-homeobox gene eyegone is involved in the subdivision of the thorax of Drosophila
-
Aldaz, S., Morata, G., and Azpiazu, N. 2003. The Pax-homeobox gene eyegone is involved in the subdivision of the thorax of Drosophila. Development 130: 4473-4482.
-
(2003)
Development
, vol.130
, pp. 4473-4482
-
-
Aldaz, S.1
Morata, G.2
Azpiazu, N.3
-
2
-
-
2442631981
-
Convergent evolution of gene networks by single-gene duplications in higher eukaryotes
-
Amoutzias, G. D., Robertson, D. L., Oliver, S. G., and Bornberg-Bauer, E. 2004. Convergent evolution of gene networks by single-gene duplications in higher eukaryotes. EMBO Rep. 5: 274-279.
-
(2004)
EMBO Rep.
, vol.5
, pp. 274-279
-
-
Amoutzias, G.D.1
Robertson, D.L.2
Oliver, S.G.3
Bornberg-Bauer, E.4
-
3
-
-
0036920433
-
Eyes absent, a key repressor of polar cell fate during Drosophila oogenesis
-
Bai, J., and Montell, D. 2002. Eyes absent, a key repressor of polar cell fate during Drosophila oogenesis. Development 129: 5377-5388.
-
(2002)
Development
, vol.129
, pp. 5377-5388
-
-
Bai, J.1
Montell, D.2
-
5
-
-
66249135996
-
Molecular evolution of the Drosophila retinome: exceptional gene gain in the higher Diptera
-
Bao, R., and Friedrich, M. 2009. Molecular evolution of the Drosophila retinome: exceptional gene gain in the higher Diptera. Mol. Biol. Evol. 26: 1273-1287.
-
(2009)
Mol. Biol. Evol.
, vol.26
, pp. 1273-1287
-
-
Bao, R.1
Friedrich, M.2
-
6
-
-
45449115390
-
Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences
-
Berger, M. F., et al. 2008. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133: 1266-1276.
-
(2008)
Cell
, vol.133
, pp. 1266-1276
-
-
Berger, M.F.1
-
7
-
-
58149216257
-
Zinc-finger paralogues tsh and tio are functionally equivalent during imaginal development in Drosophila and maintain their expression levels through auto- and cross-negative feedback loops
-
Bessa, J., Carmona, L., and Casares, F. 2009. Zinc-finger paralogues tsh and tio are functionally equivalent during imaginal development in Drosophila and maintain their expression levels through auto- and cross-negative feedback loops. Dev. Dyn. 238: 19-28.
-
(2009)
Dev. Dyn.
, vol.238
, pp. 19-28
-
-
Bessa, J.1
Carmona, L.2
Casares, F.3
-
8
-
-
0031441007
-
The Drosophila eyes absent gene directs ectopic eye formation in a pathway conserved between flies and vertebrates
-
Bonini, N. M., Bui, Q. L., Gray-Board, G. L., and Warrick, J. M. 1997. The Drosophila eyes absent gene directs ectopic eye formation in a pathway conserved between flies and vertebrates. Development 124: 4819-4826.
-
(1997)
Development
, vol.124
, pp. 4819-4826
-
-
Bonini, N.M.1
Bui, Q.L.2
Gray-Board, G.L.3
Warrick, J.M.4
-
9
-
-
0027510673
-
The eyes absent gene
-
Cell
-
Bonini, N. M., Leiserson, W. M., and Benzer, S. 1993. The eyes absent gene: genetic control of cell survival and differentiation in the developing Drosophila eye. Cell 72: 379-395.
-
(1993)
genetic control of cell survival and differentiation in the developing Drosophila eye
, vol.72
, pp. 379-395
-
-
Bonini, N.M.1
Leiserson, W.M.2
Benzer, S.3
-
10
-
-
0032054877
-
Multiple roles of the eyes absent gene in Drosophila
-
Bonini, N. M., Leiserson, W. M., and Benzer, S. 1998. Multiple roles of the eyes absent gene in Drosophila. Dev. Biol. 196: 42-57.
-
(1998)
Dev. Biol.
, vol.196
, pp. 42-57
-
-
Bonini, N.M.1
Leiserson, W.M.2
Benzer, S.3
-
11
-
-
56049119864
-
Drosophila nemo promotes eye specification directed by the retinal determination gene network
-
Braid, L. R., and Verheyen, E. M. 2008. Drosophila nemo promotes eye specification directed by the retinal determination gene network. Genetics 180: 283-299.
-
(2008)
Genetics
, vol.180
, pp. 283-299
-
-
Braid, L.R.1
Verheyen, E.M.2
-
12
-
-
1542330053
-
Genetic determination of nephrogenesis
-
Pediatr. Nephrol.
-
Brodbeck, S., and Englert, C. 2004. Genetic determination of nephrogenesis: the Pax/Eya/Six gene network. Pediatr. Nephrol. 19: 249-255.
-
(2004)
the Pax/Eya/Six gene network
, vol.19
, pp. 249-255
-
-
Brodbeck, S.1
Englert, C.2
-
13
-
-
0031044116
-
PAX-6 in development and evolution
-
Callaerts, P., Halder, G., and Gehring, W. J. 1997. PAX-6 in development and evolution. Annu. Rev. Neurosci. 20: 483-532.
-
(1997)
Annu. Rev. Neurosci.
, vol.20
, pp. 483-532
-
-
Callaerts, P.1
Halder, G.2
Gehring, W.J.3
-
14
-
-
0035809110
-
Drosophila Pax-6/eyeless is essential for normal adult brain structure and function
-
Callaerts, P., et al. 2001. Drosophila Pax-6/eyeless is essential for normal adult brain structure and function. J. Neurobiol. 46: 73-88.
-
(2001)
J. Neurobiol.
, vol.46
, pp. 73-88
-
-
Callaerts, P.1
-
15
-
-
0344441416
-
Development of neural lineages derived from the sine oculis positive eye field of Drosophila
-
Chang, T., Younossi-Hartenstein, A., and Hartenstein, V. 2003. Development of neural lineages derived from the sine oculis positive eye field of Drosophila. Arthropod. Struct. Dev. 32: 303-317.
-
(2003)
Arthropod. Struct. Dev.
, vol.32
, pp. 303-317
-
-
Chang, T.1
Younossi-Hartenstein, A.2
Hartenstein, V.3
-
16
-
-
34249315127
-
Patterns of internal gene duplication in the course of metazoan evolution
-
Chen, C. C., Li, W. H., and Sung, H. M. 2007. Patterns of internal gene duplication in the course of metazoan evolution. Gene 396: 59-65.
-
(2007)
Gene
, vol.396
, pp. 59-65
-
-
Chen, C.C.1
Li, W.H.2
Sung, H.M.3
-
17
-
-
0028244770
-
The Drosophila sine oculis locus encodes a homeodomain-containing protein required for the development of the entire visual system
-
Cheyette, B. N., Green, P. J., Martin, K., Garren, H., Hartenstein, V., and Zipursky, S. L. 1994. The Drosophila sine oculis locus encodes a homeodomain-containing protein required for the development of the entire visual system. Neuron 12: 977-996.
-
(1994)
Neuron
, vol.12
, pp. 977-996
-
-
Cheyette, B.N.1
Green, P.J.2
Martin, K.3
Garren, H.4
Hartenstein, V.5
Zipursky, S.L.6
-
18
-
-
0028364608
-
Rotation of photoreceptor clusters in the developing Drosophila eye requires the nemo gene
-
Choi, K. W., and Benzer, S. 1994. Rotation of photoreceptor clusters in the developing Drosophila eye requires the nemo gene. Cell 78: 125-136.
-
(1994)
Cell
, vol.78
, pp. 125-136
-
-
Choi, K.W.1
Benzer, S.2
-
19
-
-
47149117454
-
Evolution of genes and genomes on the Drosophila phylogeny
-
Clark, A. G., et al. 2007. Evolution of genes and genomes on the Drosophila phylogeny. Nature 450: 203-218.
-
(2007)
Nature
, vol.450
, pp. 203-218
-
-
Clark, A.G.1
-
20
-
-
34249887962
-
Distal antenna and distal antenna-related function in the retinal determination network during eye development in Drosophila
-
Curtiss, J., Burnett, M., and Mlodzik, M. 2007. Distal antenna and distal antenna-related function in the retinal determination network during eye development in Drosophila. Dev. Biol. 306: 685-702.
-
(2007)
Dev. Biol.
, vol.306
, pp. 685-702
-
-
Curtiss, J.1
Burnett, M.2
Mlodzik, M.3
-
21
-
-
0033105606
-
twin of eyeless, a second Pax-6 gene of Drosophila, acts upstream of eyeless in the control of eye development
-
Czerny, T., Halder, G., Kloter, U., Souabni, A., Gehring, W. J., and Busslinger, M. 1999. twin of eyeless, a second Pax-6 gene of Drosophila, acts upstream of eyeless in the control of eye development. Mol. Cell. 3: 297-307.
-
(1999)
Mol. Cell.
, vol.3
, pp. 297-307
-
-
Czerny, T.1
Halder, G.2
Kloter, U.3
Souabni, A.4
Gehring, W.J.5
Busslinger, M.6
-
22
-
-
70349114323
-
Restriction of ectopic eye formation by Drosophila teashirt and tiptop to the developing antenna
-
Datta, R. R., Lurye, J. M., and Kumar, J. P. 2009. Restriction of ectopic eye formation by Drosophila teashirt and tiptop to the developing antenna. Dev. Dyn. 238: 2202-2210.
-
(2009)
Dev. Dyn.
, vol.238
, pp. 2202-2210
-
-
Datta, R.R.1
Lurye, J.M.2
Kumar, J.P.3
-
23
-
-
0035065391
-
Differential selection after duplication in mammalian developmental genes
-
Dermitzakis, E. T., and Clark, A. G. 2001. Differential selection after duplication in mammalian developmental genes. Mol Biol Evol. 18: 557-562.
-
(2001)
Mol Biol Evol.
, vol.18
, pp. 557-562
-
-
Dermitzakis, E.T.1
Clark, A.G.2
-
24
-
-
10344225608
-
Spalt transcription factors are required for R3/R4 specification and establishment of planar cell polarity in the Drosophila eye
-
Domingos, P. M., Mlodzik, M., Mendes, C. S., Brown, S., Steller, H., and Mollereau, B. 2004. Spalt transcription factors are required for R3/R4 specification and establishment of planar cell polarity in the Drosophila eye. Development 131: 5695-5702.
-
(2004)
Development
, vol.131
, pp. 5695-5702
-
-
Domingos, P.M.1
Mlodzik, M.2
Mendes, C.S.3
Brown, S.4
Steller, H.5
Mollereau, B.6
-
25
-
-
11144268967
-
Conservation and non-conservation of genetic pathways in eye specification
-
Donner, A. L., and Maas, R. L. 2004. Conservation and non-conservation of genetic pathways in eye specification. Int. J. Dev. Biol. 48: 743-753.
-
(2004)
Int. J. Dev. Biol.
, vol.48
, pp. 743-753
-
-
Donner, A.L.1
Maas, R.L.2
-
26
-
-
0038022667
-
A somatic role for eyes absent (eya) and sine oculis (so) in Drosophila spermatocyte development
-
Fabrizio, J. J., Boyle, M., and DiNardo, S. 2003. A somatic role for eyes absent (eya) and sine oculis (so) in Drosophila spermatocyte development. Dev. Biol. 258: 117-128.
-
(2003)
Dev. Biol.
, vol.258
, pp. 117-128
-
-
Fabrizio, J.J.1
Boyle, M.2
DiNardo, S.3
-
27
-
-
0026098805
-
The gene teashirt is required for the development of Drosophila embryonic trunk segments and encodes a protein with widely spaced zinc finger motifs
-
Fasano, L., et al. 1991. The gene teashirt is required for the development of Drosophila embryonic trunk segments and encodes a protein with widely spaced zinc finger motifs. Cell 64: 63-79.
-
(1991)
Cell
, vol.64
, pp. 63-79
-
-
Fasano, L.1
-
28
-
-
0032893932
-
Preservation of duplicate genes by complementary, degenerative mutations
-
Force, A., Lynch, M., Pickett, F. B., Amores, A., Yan, Y. L., and Postlethwait, J. 1999. Preservation of duplicate genes by complementary, degenerative mutations. Genetics 151: 1531-1545.
-
(1999)
Genetics
, vol.151
, pp. 1531-1545
-
-
Force, A.1
Lynch, M.2
Pickett, F.B.3
Amores, A.4
Yan, Y.L.5
Postlethwait, J.6
-
29
-
-
41149160297
-
Drosophila chemoreceptor gene evolution
-
Mol. Ecol.
-
Gardiner, A., Barker, D., Butlin, R. K., Jordan, W. C., and Ritchie, M. G. 2008. Drosophila chemoreceptor gene evolution: selection, specialization and genome size. Mol. Ecol. 17: 1648-1657.
-
(2008)
selection, specialization and genome size
, vol.17
, pp. 1648-1657
-
-
Gardiner, A.1
Barker, D.2
Butlin, R.K.3
Jordan, W.C.4
Ritchie, M.G.5
-
30
-
-
0029678243
-
The master control gene for morphogenesis and evolution of the eye
-
Gehring, W. J. 1996. The master control gene for morphogenesis and evolution of the eye. Genes Cells 1: 11-15.
-
(1996)
Genes Cells
, vol.1
, pp. 11-15
-
-
Gehring, W.J.1
-
32
-
-
33846659488
-
Composition-based statistics and translated nucleotide searches
-
BMC Biol.
-
Gertz, E. M., Yu, Y. K., Agarwala, R., Schaffer, A. A., and Altschul, S. F. 2006. Composition-based statistics and translated nucleotide searches: improving the TBLASTN module of BLAST. BMC Biol. 4: 41.
-
(2006)
improving the TBLASTN module of BLAST
, vol.4
, pp. 41
-
-
Gertz, E.M.1
Yu, Y.K.2
Agarwala, R.3
Schaffer, A.A.4
Altschul, S.F.5
-
33
-
-
0036942922
-
The evolution of engrailed genes after duplication and speciation events
-
Gibert, J. M. 2002. The evolution of engrailed genes after duplication and speciation events. Dev. Genes Evol. 212: 307-318.
-
(2002)
Dev. Genes Evol.
, vol.212
, pp. 307-318
-
-
Gibert, J.M.1
-
34
-
-
35648943189
-
A Hox-Eya-Pax complex regulates early kidney developmental gene expression
-
Gong, K. Q., Yallowitz, A. R., Sun, H., Dressler, G. R., and Wellik, D. M. 2007. A Hox-Eya-Pax complex regulates early kidney developmental gene expression. Mol. Cell Biol. 27: 7661-7668.
-
(2007)
Mol. Cell Biol.
, vol.27
, pp. 7661-7668
-
-
Gong, K.Q.1
Yallowitz, A.R.2
Sun, H.3
Dressler, G.R.4
Wellik, D.M.5
-
35
-
-
2642580659
-
Duplicate genes increase gene expression diversity within and between species
-
Gu, Z., Rifkin, S. A., White, K. P., and Li, W. H. 2004. Duplicate genes increase gene expression diversity within and between species. Nat. Genet. 36: 577-579.
-
(2004)
Nat. Genet.
, vol.36
, pp. 577-579
-
-
Gu, Z.1
Rifkin, S.A.2
White, K.P.3
Li, W.H.4
-
36
-
-
0028944665
-
Induction of ectopic eyes by targeted expression of the eyeless gene in Drosophila
-
Halder, G., Callaerts, P., and Gehring, W. J. 1995. Induction of ectopic eyes by targeted expression of the eyeless gene in Drosophila. Science 267: 1788-1792.
-
(1995)
Science
, vol.267
, pp. 1788-1792
-
-
Halder, G.1
Callaerts, P.2
Gehring, W.J.3
-
37
-
-
0032102759
-
Mammalian and Drosophila dachshund genes are related to the Ski proto-oncogene and are expressed in eye and limb
-
Hammond, K. L., Hanson, I. M., Brown, A. G., Lettice, L. A., and Hill, R. E. 1998. Mammalian and Drosophila dachshund genes are related to the Ski proto-oncogene and are expressed in eye and limb. Mech. Dev. 74: 121-131.
-
(1998)
Mech. Dev.
, vol.74
, pp. 121-131
-
-
Hammond, K.L.1
Hanson, I.M.2
Brown, A.G.3
Lettice, L.A.4
Hill, R.E.5
-
38
-
-
0035782846
-
Mammalian homologues of the Drosophila eye specification genes
-
Hanson, I. M. 2001. Mammalian homologues of the Drosophila eye specification genes. Semin. Cell Dev. Biol. 12: 475-484.
-
(2001)
Semin. Cell Dev. Biol.
, vol.12
, pp. 475-484
-
-
Hanson, I.M.1
-
39
-
-
0037327334
-
Identification of pseudogenes in the Drosophila melanogaster genome
-
Harrison, P. M., Milburn, D., Zhang, Z., Bertone, P., and Gerstein, M. 2003. Identification of pseudogenes in the Drosophila melanogaster genome. Nucleic Acids Res. 31: 1033-1037.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 1033-1037
-
-
Harrison, P.M.1
Milburn, D.2
Zhang, Z.3
Bertone, P.4
Gerstein, M.5
-
40
-
-
0034177642
-
From worm to man
-
Trends Neurosci.
-
Harteneck, C., Plant, T. D., and Schultz, G. 2000. From worm to man: three subfamilies of TRP channels. Trends Neurosci. 23: 159-166.
-
(2000)
three subfamilies of TRP channels
, vol.23
, pp. 159-166
-
-
Harteneck, C.1
Plant, T.D.2
Schultz, G.3
-
41
-
-
0032529684
-
Specification of primary pigment cell and outer photoreceptor fates by BarH1 homeobox gene in the developing Drosophila eye
-
Hayashi, T., Kojima, T., and Saigo, K. 1998. Specification of primary pigment cell and outer photoreceptor fates by BarH1 homeobox gene in the developing Drosophila eye. Dev. Biol. 200: 131-145.
-
(1998)
Dev. Biol.
, vol.200
, pp. 131-145
-
-
Hayashi, T.1
Kojima, T.2
Saigo, K.3
-
42
-
-
0033573003
-
Synergistic regulation of vertebrate muscle development by Dach2, Eya2, and Six1, homologs of genes required for Drosophila eye formation
-
Heanue, T. A., et al. 1999. Synergistic regulation of vertebrate muscle development by Dach2, Eya2, and Six1, homologs of genes required for Drosophila eye formation. Genes Dev. 13: 3231-3243.
-
(1999)
Genes Dev.
, vol.13
, pp. 3231-3243
-
-
Heanue, T.A.1
-
43
-
-
0028342845
-
The evolution of functionally novel proteins after gene duplication
-
Hughes, A. L. 1994. The evolution of functionally novel proteins after gene duplication. Proc. Biol. Sci. 256: 119-124.
-
(1994)
Proc. Biol. Sci.
, vol.256
, pp. 119-124
-
-
Hughes, A.L.1
-
44
-
-
28244482030
-
Gene duplication and the properties of biological networks
-
Hughes, A. L., and Friedman, R. 2005. Gene duplication and the properties of biological networks. J. Mol. Evol. 61: 758-764.
-
(2005)
J. Mol. Evol.
, vol.61
, pp. 758-764
-
-
Hughes, A.L.1
Friedman, R.2
-
45
-
-
28244490929
-
Duplication events and the evolution of segmental identity
-
Hurley, I., Hale, M. E., and Prince, V. E. 2005. Duplication events and the evolution of segmental identity. Evol. Dev. 7: 556-567.
-
(2005)
Evol. Dev.
, vol.7
, pp. 556-567
-
-
Hurley, I.1
Hale, M.E.2
Prince, V.E.3
-
46
-
-
0032143110
-
Molecular regulators involved in vertebrate eye development
-
Jean, D., Ewan, K., and Gruss, P. 1998. Molecular regulators involved in vertebrate eye development. Mech. Dev. 76: 3-18.
-
(1998)
Mech. Dev.
, vol.76
, pp. 3-18
-
-
Jean, D.1
Ewan, K.2
Gruss, P.3
-
47
-
-
0032506240
-
Lune/eye gone, a Pax-like protein, uses a partial paired domain and a homeodomain for DNA recognition
-
Jun, S., Wallen, R. V., Goriely, A., Kalionis, B., and Desplan, C. 1998. Lune/eye gone, a Pax-like protein, uses a partial paired domain and a homeodomain for DNA recognition. Proc. Natl. Acad. Sci. USA. 95: 13720-13725.
-
(1998)
Proc. Natl. Acad. Sci. USA.
, vol.95
, pp. 13720-13725
-
-
Jun, S.1
Wallen, R.V.2
Goriely, A.3
Kalionis, B.4
Desplan, C.5
-
48
-
-
0031760440
-
Eya1 expression in the developing ear and kidney
-
Dev. Dyn.
-
Kalatzis, V., Sahly, I., El-Amraoui, A., and Petit, C. 1998. Eya1 expression in the developing ear and kidney: towards the understanding of the pathogenesis of Branchio-Oto-Renal (BOR) syndrome. Dev. Dyn. 213: 486-499.
-
(1998)
towards the understanding of the pathogenesis of Branchio-Oto-Renal (BOR) syndrome
, vol.213
, pp. 486-499
-
-
Kalatzis, V.1
Sahly, I.2
El-Amraoui, A.3
Petit, C.4
-
49
-
-
0035023836
-
Differential expression and function of the Drosophila Pax6 genes eyeless and twin of eyeless in embryonic central nervous system development
-
Kammermeier, L., et al. 2001. Differential expression and function of the Drosophila Pax6 genes eyeless and twin of eyeless in embryonic central nervous system development. Mech. Dev. 103: 71-78.
-
(2001)
Mech. Dev.
, vol.103
, pp. 71-78
-
-
Kammermeier, L.1
-
51
-
-
25844436515
-
Fly SIX-type homeodomain proteins Sine oculis and Optix partner with different cofactors during eye development
-
Kenyon, K. L., Li, D. J., Clouser, C., Tran, S., and Pignoni, F. 2005a. Fly SIX-type homeodomain proteins Sine oculis and Optix partner with different cofactors during eye development. Dev. Dyn. 234: 497-504.
-
(2005)
Dev. Dyn.
, vol.234
, pp. 497-504
-
-
Kenyon, K.L.1
Li, D.J.2
Clouser, C.3
Tran, S.4
Pignoni, F.5
-
52
-
-
25844503070
-
Partner specificity is essential for proper function of the SIX-type homeodomain proteins Sine oculis and Optix during fly eye development
-
Kenyon, K. L., et al. 2005b. Partner specificity is essential for proper function of the SIX-type homeodomain proteins Sine oculis and Optix during fly eye development. Dev. Biol. 286: 158-168.
-
(2005)
Dev. Biol.
, vol.286
, pp. 158-168
-
-
Kenyon, K.L.1
-
53
-
-
34249294453
-
Pax-Six-Eya-Dach network during amphioxus development
-
Dev. Biol.
-
Kozmik, Z., et al. 2007. Pax-Six-Eya-Dach network during amphioxus development: conservation in vitro but context specificity in vivo. Dev. Biol. 306: 143-159.
-
(2007)
conservation in vitro but context specificity in vivo
, vol.306
, pp. 143-159
-
-
Kozmik, Z.1
-
54
-
-
0033209331
-
Evolutionary preservation of redundant duplicated genes
-
Krakauer, D. C., and Nowak, M. A. 1999. Evolutionary preservation of redundant duplicated genes. Semin. Cell Dev. Biol. 10: 555-559.
-
(1999)
Semin. Cell Dev. Biol.
, vol.10
, pp. 555-559
-
-
Krakauer, D.C.1
Nowak, M.A.2
-
55
-
-
0035512636
-
Signalling pathways in Drosophila and vertebrate retinal development
-
Kumar, J. P. 2001. Signalling pathways in Drosophila and vertebrate retinal development. Nat. Rev. Genet. 2: 846-857.
-
(2001)
Nat. Rev. Genet.
, vol.2
, pp. 846-857
-
-
Kumar, J.P.1
-
56
-
-
64249153206
-
The molecular circuitry governing retinal determination
-
Kumar, J. P. 2009a. The molecular circuitry governing retinal determination. Biochim. Biophys. Acta 1789: 306-314.
-
(2009)
Biochim. Biophys. Acta
, vol.1789
, pp. 306-314
-
-
Kumar, J.P.1
-
57
-
-
60149107489
-
The sine oculis homeobox (SIX) family of transcription factors as regulators of development and disease
-
Kumar, J. P. 2009b. The sine oculis homeobox (SIX) family of transcription factors as regulators of development and disease. Cell. Mol. Life Sci. 66: 565-583.
-
(2009)
Cell. Mol. Life Sci.
, vol.66
, pp. 565-583
-
-
Kumar, J.P.1
-
58
-
-
0034007075
-
Genetic control of development of the mushroom bodies, the associative learning centers in the Drosophila brain, by the eyeless, twin of eyeless, and Dachshund genes
-
Kurusu, M., Nagao, T., Walldorf, U., Flister, S., Gehring, W. J., and Furukubo-Tokunaga, K. 2000. Genetic control of development of the mushroom bodies, the associative learning centers in the Drosophila brain, by the eyeless, twin of eyeless, and Dachshund genes. Proc. Natl. Acad. Sci. USA 97: 2140-2144.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 2140-2144
-
-
Kurusu, M.1
Nagao, T.2
Walldorf, U.3
Flister, S.4
Gehring, W.J.5
Furukubo-Tokunaga, K.6
-
59
-
-
0038016516
-
Thymus, kidney and craniofacial abnormalities in Six 1 deficient mice
-
Laclef, C., Souil, E., Demignon, J., and Maire, P. 2003. Thymus, kidney and craniofacial abnormalities in Six 1 deficient mice. Mech. Dev. 120: 669-679.
-
(2003)
Mech. Dev.
, vol.120
, pp. 669-679
-
-
Laclef, C.1
Souil, E.2
Demignon, J.3
Maire, P.4
-
60
-
-
22144470460
-
A critical role of teashirt for patterning the ventral epidermis is masked by ectopic expression of tiptop, a paralog of teashirt in Drosophila
-
Laugier, E., Yang, Z., Fasano, L., Kerridge, S., and Vola, C. 2005. A critical role of teashirt for patterning the ventral epidermis is masked by ectopic expression of tiptop, a paralog of teashirt in Drosophila. Dev. Biol. 283: 446-458.
-
(2005)
Dev. Biol.
, vol.283
, pp. 446-458
-
-
Laugier, E.1
Yang, Z.2
Fasano, L.3
Kerridge, S.4
Vola, C.5
-
61
-
-
0034634395
-
The evolutionary fate and consequences of duplicate genes
-
Lynch, M., and Conery, J. S. 2000. The evolutionary fate and consequences of duplicate genes. Science 290: 1151-1155.
-
(2000)
Science
, vol.290
, pp. 1151-1155
-
-
Lynch, M.1
Conery, J.S.2
-
62
-
-
0037270015
-
The evolutionary demography of duplicate genes
-
Lynch, M., and Conery, J. S. 2003. The evolutionary demography of duplicate genes. J. Struct. Funct. Genom. 3: 35-44.
-
(2003)
J. Struct. Funct. Genom.
, vol.3
, pp. 35-44
-
-
Lynch, M.1
Conery, J.S.2
-
63
-
-
0033972072
-
The probability of duplicate gene preservation by subfunctionalization
-
Lynch, M., and Force, A. 2000. The probability of duplicate gene preservation by subfunctionalization. Genetics 154: 459-473.
-
(2000)
Genetics
, vol.154
, pp. 459-473
-
-
Lynch, M.1
Force, A.2
-
64
-
-
0028151047
-
dachshund encodes a nuclear protein required for normal eye and leg development in Drosophila
-
Mardon, G., Solomon, N. M., and Rubin, G. M. 1994. dachshund encodes a nuclear protein required for normal eye and leg development in Drosophila. Development 120: 3473-3486.
-
(1994)
Development
, vol.120
, pp. 3473-3486
-
-
Mardon, G.1
Solomon, N.M.2
Rubin, G.M.3
-
65
-
-
34547725214
-
Generating patterned arrays of photoreceptors
-
Morante, J., Desplan, C., and Celik, A. 2007. Generating patterned arrays of photoreceptors. Curr. Opin. Genet. Dev. 17: 314-319.
-
(2007)
Curr. Opin. Genet. Dev.
, vol.17
, pp. 314-319
-
-
Morante, J.1
Desplan, C.2
Celik, A.3
-
66
-
-
0004036449
-
Molecular Evolution and Phylogenetics
-
Oxford University Press, USA.
-
Nei, M., and Kumar, S. 2000. Molecular Evolution and Phylogenetics. Oxford University Press, USA.
-
(2000)
-
-
Nei, M.1
Kumar, S.2
-
67
-
-
0036743664
-
Dominant-negative form of the Pax6 homolog eyeless for tissue-specific loss-of-function studies in the developing eye and brain in drosophila
-
Niimi, T., Clements, J., Gehring, W. J., and Callaerts, P. 2002. Dominant-negative form of the Pax6 homolog eyeless for tissue-specific loss-of-function studies in the developing eye and brain in drosophila. Genesis 34: 74-75.
-
(2002)
Genesis
, vol.34
, pp. 74-75
-
-
Niimi, T.1
Clements, J.2
Gehring, W.J.3
Callaerts, P.4
-
68
-
-
0033828640
-
Early development of the Drosophila mushroom body
-
Development
-
Noveen, A., Daniel, A., and Hartenstein, V. 2000. Early development of the Drosophila mushroom body: the roles of eyeless and dachshund. Development 127: 3475-3488.
-
(2000)
the roles of eyeless and dachshund
, vol.127
, pp. 3475-3488
-
-
Noveen, A.1
Daniel, A.2
Hartenstein, V.3
-
69
-
-
45449111373
-
Analysis of homeodomain specificities allows the family-wide prediction of preferred recognition sites
-
Noyes, M. B., Christensen, R. G., Wakabayashi, A., Stormo, G. D., Brodsky, M. H., and Wolfe, S. A. 2008. Analysis of homeodomain specificities allows the family-wide prediction of preferred recognition sites. Cell 133: 1277-1289.
-
(2008)
Cell
, vol.133
, pp. 1277-1289
-
-
Noyes, M.B.1
Christensen, R.G.2
Wakabayashi, A.3
Stormo, G.D.4
Brodsky, M.H.5
Wolfe, S.A.6
-
70
-
-
0003515251
-
Evolution by Gene Duplication
-
Springer-Verlag, Berlin.
-
Ohno, S. 1970. Evolution by Gene Duplication. Springer-Verlag, Berlin.
-
(1970)
-
-
Ohno, S.1
-
71
-
-
0024356364
-
Role of gene duplication in evolution
-
Ohta, T. 1989. Role of gene duplication in evolution. Genome 31: 304-310.
-
(1989)
Genome
, vol.31
, pp. 304-310
-
-
Ohta, T.1
-
72
-
-
0032006566
-
The Homothorax homeoprotein activates the nuclear localization of another homeoprotein, extradenticle, and suppresses eye development in Drosophila
-
Pai, C. Y., et al. 1998. The Homothorax homeoprotein activates the nuclear localization of another homeoprotein, extradenticle, and suppresses eye development in Drosophila. Genes Dev. 12: 435-446.
-
(1998)
Genes Dev.
, vol.12
, pp. 435-446
-
-
Pai, C.Y.1
-
73
-
-
0032442360
-
Targeted expression of teashirt induces ectopic eyes in Drosophila
-
Pan, D., and Rubin, G. M. 1998. Targeted expression of teashirt induces ectopic eyes in Drosophila. Proc. Natl. Acad. Sci. USA 95: 15508-15512.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 15508-15512
-
-
Pan, D.1
Rubin, G.M.2
-
74
-
-
0031444287
-
The eye-specification proteins So and Eya form a complex and regulate multiple steps in Drosophila eye development
-
Pignoni, F., Hu, B., Zavitz, K. H., Xiao, J., Garrity, P. A., and Zipursky, S. L. 1997. The eye-specification proteins So and Eya form a complex and regulate multiple steps in Drosophila eye development. Cell 91: 881-891.
-
(1997)
Cell
, vol.91
, pp. 881-891
-
-
Pignoni, F.1
Hu, B.2
Zavitz, K.H.3
Xiao, J.4
Garrity, P.A.5
Zipursky, S.L.6
-
75
-
-
4544347559
-
Functional divergence between eyeless and twin of eyeless in Drosophila melanogaster
-
Punzo, C., et al. 2004. Functional divergence between eyeless and twin of eyeless in Drosophila melanogaster. Development 131: 3943-3953.
-
(2004)
Development
, vol.131
, pp. 3943-3953
-
-
Punzo, C.1
-
76
-
-
0027965633
-
Homology of the eyeless gene of Drosophila to the Small eye gene in mice and Aniridia in humans
-
Quiring, R., Walldorf, U., Kloter, U., and Gehring, W. J. 1994. Homology of the eyeless gene of Drosophila to the Small eye gene in mice and Aniridia in humans. Science 265: 785-789.
-
(1994)
Science
, vol.265
, pp. 785-789
-
-
Quiring, R.1
Walldorf, U.2
Kloter, U.3
Gehring, W.J.4
-
78
-
-
0242690091
-
The evolution of developmental mechanisms
-
Rudel, D., and Sommer, R. J. 2003. The evolution of developmental mechanisms. Dev. Biol. 264: 15-37.
-
(2003)
Dev. Biol.
, vol.264
, pp. 15-37
-
-
Rudel, D.1
Sommer, R.J.2
-
79
-
-
77649084074
-
Identification of retinal transformation hot spots in developing Drosophila epithelia
-
Salzer, C. L., and Kumar, J. P. 2010. Identification of retinal transformation hot spots in developing Drosophila epithelia. PLoS ONE 5: e8510.
-
(2010)
PLoS ONE
, vol.5
-
-
Salzer, C.L.1
Kumar, J.P.2
-
80
-
-
0035831042
-
A chemosensory gene family encoding candidate gustatory and olfactory receptors in Drosophila
-
Scott, K., et al. 2001. A chemosensory gene family encoding candidate gustatory and olfactory receptors in Drosophila. Cell 104: 661-673.
-
(2001)
Cell
, vol.104
, pp. 661-673
-
-
Scott, K.1
-
81
-
-
0034023675
-
The Drosophila homeobox gene optix is capable of inducing ectopic eyes by an eyeless-independent mechanism
-
Seimiya, M., and Gehring, W. J. 2000. The Drosophila homeobox gene optix is capable of inducing ectopic eyes by an eyeless-independent mechanism. Development 127: 1879-1886.
-
(2000)
Development
, vol.127
, pp. 1879-1886
-
-
Seimiya, M.1
Gehring, W.J.2
-
82
-
-
0028019609
-
sine oculis is a homeobox gene required for Drosophila visual system development
-
Serikaku, M. A., and O'Tousa, J. E. 1994. sine oculis is a homeobox gene required for Drosophila visual system development. Genetics 138: 1137-1150.
-
(1994)
Genetics
, vol.138
, pp. 1137-1150
-
-
Serikaku, M.A.1
O'Tousa, J.E.2
-
83
-
-
0031037843
-
Ectopic eye development in Drosophila induced by directed dachshund expression
-
Shen, W., and Mardon, G. 1997. Ectopic eye development in Drosophila induced by directed dachshund expression. Development 124: 45-52.
-
(1997)
Development
, vol.124
, pp. 45-52
-
-
Shen, W.1
Mardon, G.2
-
84
-
-
0033209206
-
Gene function, gene networks and the fate of duplicated genes
-
Shimeld, S. M. 1999. Gene function, gene networks and the fate of duplicated genes. Semin. Cell. Dev. Biol. 10: 549-553.
-
(1999)
Semin. Cell. Dev. Biol.
, vol.10
, pp. 549-553
-
-
Shimeld, S.M.1
-
85
-
-
41949134234
-
Do teashirt family genes specify trunk identity? Insights from the single tiptop/teashirt homolog of Tribolium castaneum
-
Shippy, T. D., Tomoyasu, Y., Nie, W., Brown, S. J., and Denell, R. E. 2008. Do teashirt family genes specify trunk identity? Insights from the single tiptop/teashirt homolog of Tribolium castaneum. Dev. Genes Evol. 218: 141-152.
-
(2008)
Dev. Genes Evol.
, vol.218
, pp. 141-152
-
-
Shippy, T.D.1
Tomoyasu, Y.2
Nie, W.3
Brown, S.J.4
Denell, R.E.5
-
87
-
-
0036844682
-
Pax6; a pleiotropic player in development
-
Simpson, T. I., and Price, D. J. 2002. Pax6; a pleiotropic player in development. Bioessays 24: 1041-1051.
-
(2002)
Bioessays
, vol.24
, pp. 1041-1051
-
-
Simpson, T.I.1
Price, D.J.2
-
88
-
-
34547781750
-
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
-
Tamura, K., Dudley, J., Nei, M., and Kumar, S. 2007. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24: 1596-1599.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
89
-
-
2442537233
-
Gene regulatory network growth by duplication
-
Teichmann, S. A., and Babu, M. M. 2004. Gene regulatory network growth by duplication. Nat. Genet. 36: 492-496.
-
(2004)
Nat. Genet.
, vol.36
, pp. 492-496
-
-
Teichmann, S.A.1
Babu, M.M.2
-
90
-
-
0027968068
-
CLUSTAL W
-
Nucleic Acids Res.
-
Thompson, J. D., Higgins, D. G., and Gibson, T. J. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680.
-
(1994)
improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
91
-
-
0033215026
-
A conserved blueprint for the eye?
-
Treisman, J. E. 1999. A conserved blueprint for the eye? Bioessays 21: 843-850.
-
(1999)
Bioessays
, vol.21
, pp. 843-850
-
-
Treisman, J.E.1
-
92
-
-
0022293979
-
Processed pseudogenes
-
Annu. Rev. Genet.
-
Vanin, E. F. 1985. Processed pseudogenes: characteristics and evolution. Annu. Rev. Genet. 19: 253-272.
-
(1985)
characteristics and evolution
, vol.19
, pp. 253-272
-
-
Vanin, E.F.1
-
93
-
-
0030162729
-
Genetic redundancy caused by gene duplications and its evolution in networks of transcriptional regulators
-
Wagner, A. 1996. Genetic redundancy caused by gene duplications and its evolution in networks of transcriptional regulators. Biol. Cybern. 74: 557-567.
-
(1996)
Biol. Cybern.
, vol.74
, pp. 557-567
-
-
Wagner, A.1
-
94
-
-
0034639936
-
Vertebrate eye development as modeled in Drosophila
-
Wawersik, S., and Maas, R. L. 2000. Vertebrate eye development as modeled in Drosophila. Hum. Mol. Genet. 9: 917-925.
-
(2000)
Hum. Mol. Genet.
, vol.9
, pp. 917-925
-
-
Wawersik, S.1
Maas, R.L.2
-
95
-
-
33847351999
-
Sine oculis, a member of the SIX family of transcription factors, directs eye formation
-
Weasner, B., Salzer, C., and Kumar, J. P. 2007. Sine oculis, a member of the SIX family of transcription factors, directs eye formation. Dev. Biol. 303: 756-771.
-
(2007)
Dev. Biol.
, vol.303
, pp. 756-771
-
-
Weasner, B.1
Salzer, C.2
Kumar, J.P.3
-
96
-
-
70349283024
-
Transcriptional activities of the Pax6 gene eyeless regulate tissue specificity of ectopic eye formation in Drosophila
-
Weasner, B. M., Weasner, B., Deyoung, S. M., Michaels, S. D., and Kumar, J. P. 2009. Transcriptional activities of the Pax6 gene eyeless regulate tissue specificity of ectopic eye formation in Drosophila. Dev. Biol. 334: 492-502.
-
(2009)
Dev. Biol.
, vol.334
, pp. 492-502
-
-
Weasner, B.M.1
Weasner, B.2
Deyoung, S.M.3
Michaels, S.D.4
Kumar, J.P.5
-
97
-
-
70349257766
-
The non-conserved C-terminal segments of Sine Oculis Homeobox (SIX) proteins confer functional specificity
-
Weasner, B. P., and Kumar, J. P. 2009. The non-conserved C-terminal segments of Sine Oculis Homeobox (SIX) proteins confer functional specificity. Genesis 47: 514-523.
-
(2009)
Genesis
, vol.47
, pp. 514-523
-
-
Weasner, B.P.1
Kumar, J.P.2
-
98
-
-
43349089243
-
-
Inferring evolutionary trees with PAUP*. Current Protocols in Bioinformatics. Chapter 6, Unit 6 4.
-
Wilgenbusch, J. C., and Swofford, D. 2003. Inferring evolutionary trees with PAUP*. Current Protocols in Bioinformatics. Chapter 6, Unit 6 4.
-
(2003)
-
-
Wilgenbusch, J.C.1
Swofford, D.2
-
99
-
-
0041853845
-
Six1 is required for the early organogenesis of mammalian kidney
-
Xu, P. X., Zheng, W., Huang, L., Maire, P., Laclef, C., and Silvius, D. 2003. Six1 is required for the early organogenesis of mammalian kidney. Development 130: 3085-3094.
-
(2003)
Development
, vol.130
, pp. 3085-3094
-
-
Xu, P.X.1
Zheng, W.2
Huang, L.3
Maire, P.4
Laclef, C.5
Silvius, D.6
-
100
-
-
23044464824
-
Eyg and Ey Pax proteins act by distinct transcriptional mechanisms in Drosophila development
-
Yao, J. G., and Sun, Y. H. 2005. Eyg and Ey Pax proteins act by distinct transcriptional mechanisms in Drosophila development. EMBO J. 24: 2602-2612.
-
(2005)
EMBO J.
, vol.24
, pp. 2602-2612
-
-
Yao, J.G.1
Sun, Y.H.2
-
101
-
-
39949083200
-
Differential requirements for the Pax6(5a) genes eyegone and twin of eyegone during eye development in Drosophila
-
Yao, J. G., et al. 2008. Differential requirements for the Pax6(5a) genes eyegone and twin of eyegone during eye development in Drosophila. Dev. Biol. 315: 535-551.
-
(2008)
Dev. Biol.
, vol.315
, pp. 535-551
-
-
Yao, J.G.1
|