Fly SIX-type homeodomain proteins Sine oculis and Optix partner with different cofactors during eye development

Developmental Dynamics

Volumn 234, Issue 3, 2005, Pages 497-504

  Kenyon, Kristy L ^a,b   Li, Dan Jun ^a   Clouser, Christopher ^a   Tran, Susan ^a   Pignoni, Francesca ^a,c  

^a MASSACHUSETTS EYE AND EAR INFIRMARY   (United States)

^b HOBART AND WILLIAM SMITH COLLEGES   (United States)

^c HARVARD MEDICAL SCHOOL   (United States)

Author keywords

CG30443; CG8991; Eya; Gro; Obp; Sbp; Six1; Six3; Six6; Taf1

Indexed keywords

HOMEODOMAIN PROTEIN; TRANSCRIPTION FACTOR OPTIX; TRANSCRIPTION FACTOR SINE OCULIS; UNCLASSIFIED DRUG;

ANIMAL TISSUE; ARTICLE; COMPLEX FORMATION; DEVELOPMENTAL STAGE; EMBRYO; EMBRYO DEVELOPMENT; EYE DEVELOPMENT; FLY; GENE EXPRESSION; GENETIC CONSERVATION; NEURAL STEM CELL; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHOTORECEPTOR; PRIORITY JOURNAL;

AMINO ACID SEQUENCE; ANIMALS; DROSOPHILA MELANOGASTER; DROSOPHILA PROTEINS; EYE; EYE PROTEINS; GENE EXPRESSION REGULATION, DEVELOPMENTAL; HOMEODOMAIN PROTEINS; LARVA; MOLECULAR SEQUENCE DATA; PROTEIN BINDING; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID; TRANSCRIPTION FACTORS;

ANIMALIA;

EID: 25844436515     PISSN: 10588388     EISSN: None     Source Type: Journal    
DOI: 10.1002/dvdy.20442     Document Type: Article

References (45)

1. Bartel PL, Fields S. 1995. Analyzing protein-protein interactions using the two-hybrid systems. Methods Enzymol 254: 241-263.
2. Bonini NM, Leiserson WM, Benzer S. 1993. The eyes absent gene: genetic control of cell survival and differentiation in the developing Drosophila eye. Cell 72: 379-395.
3. Blumberg H, Silver P. 1991. A split zinc-finger protein is required for normal yeast growth. Gene 107:101-110.
4. Brand AH, Perrimon N. 1993. Targeted gene expression as a means of altering cell fates and generating dominant phenotypes. Development 118:401-415.
5. Brendel V, Bucher P, Nourbakhsh I, Blaisdell BE, Karlin S. 1992. Methods and algorithms for statistical analysis of protein sequences. Proc Natl Acad Sci U S A 89:2002-2006.
6. Brugmann SA, Pandur PD, Kenyon KL, Pignoni F, Moody SA. 2004. Six1 promotes a placodal fate within the lateral neurogenic ectoderm by functioning as both a transcriptional activator and repressor. Development 131:5871-5881.
7. Chen G, Courey AJ. 2000. Groucho/TLE family proteins and transcriptional repression. Gene 249:1-16.
8. Cheyette BN, Green PJ, Martin K, Garren H, Hartenstein V, Zipursky SL. 1994. The Drosophila sine oculis locus encodes a homeodomain-containing protein required for the development of the entire visual system. Neuron 12:977-996.
9. Delidakis C, Artavanis-Tsakonas S. 1992. The Enhancer of Split [E(sp1)] locus of Drosophila encodes seven independent helix-loop-helix proteins. Proc Natl Acad Sci U S A 89:8731-8735.
10. Fingerman I, Nagaraj V, Norris D, Vershon AK. 2003. Sfp1 plays a key role in yeast ribosome biogenesis. Eukaryot Cell 2:1061-1068.
11. Fox AH, Liew C, Holmes M, Kowalski K, Mackay J, Crossley M. 1999. Transcriptional cofactors of the FOG family interact with GATA proteins by means of multiple zinc fingers. EMBO J 18:2812-2822.
12. Freeman M. 1996. Reiterative use of the EGF receptor triggers differentiation of all cell types in the Drosophila eye. Cell 87:651-660.
13. Giot L, Bader JS, Brouwer C, Chaudhuri A, Kuang B, Li Y, Hao YL, Ooi CE, Godwin B, Vitols E, Vijayadamodar G, Pochart P, Machineni H, Welsh M, Kong Y, Zerhusen B, Malcolm R, Varrone Z, Collis A, Minto M, Burgess S, McDaniel L, Stimpson E, Spriggs F, Williams J, Neurath K, Ioime N, Agee M, Voss E, Furtak K, Renzulli R, Aanensen N, Carrolla S, Bickelhaupt E, Lazovatsky Y, DaSilva A, Zhong J, Stanyon CA, Finley RL Jr, White KP, Braverman M, Jarvie T, Gold S, Leach M, Knight J, Shimkets RA, McKenna MP, Chant J, Rothberg JM. 2003. A protein interaction map of Drosophila melanogaster. Science 302: 1727-1736.
14. Han K, Manley JL. 1993. Transcriptional repression by the Drosophila even-skipped protein: definition of minimal repression domain. Genes Dev 7:491-503.
15. Hartley DA, Preiss A, Artavanis-Tsakonas S. 1988. A deduced gene product from the Drosophila neurogenic locus, enhancer of split, shows homology to mammalian G-protein beta subunit. Cell 55: 785-795.
16. Hazelett DJ, Bourouis M, Walldorf U, Treisman JE. 1998. decapentaplegic and wingless are regulated by eyes absent and eyegone and interact to direct the pattern of retinal differentiation in the eye disc. Development 125:3741-3751.
17. Heanue TA, Reshef R, Davis RJ, Mardon G, Oliver G, Tomarev S, Lassar AB, Tabin CJ. 1999. Synergistic regulation of vertebrate muscle development by Dach2, Eya2, and Six1, homologs of genes required for Drosophila eye formation. Genes Dev 13:3231-3243.
18. Jorgensen P, Rupes I, Sharom JR, Schneper L, Broach JR, Tyers M. 2004. A dynamic transcriptional network communicates growth potential to ribosome synthesis and critical cell size. Genes Dev 18:2491-2505.
19. Kawakami K, Sato S, Ozaki H, Ikeda K. 2000. Six family genes-structure and function as transcription factors and their roles in development. Bioessays 22: 616-626.
20. Kirby RJ, Hamilton GM, Finnegan DJ, Johnson KJ, Jarman AP. 2001. Drosophila homolog of the myotonic dystrophy-associated gene, SIX5, is required for muscle and gonad development. Curr Biol 11:1044-1049.
21. Kobayshi M, Nishikawa K, Suzuki T, Yamamoto M. 2001. The homeobox protein Six3 interacts with the Groucho corepressor and acts as a transcriptional repressor in eye and brain formation. Dev Biol 232:315-326.
22. Li X, Oghi KA, Zhang J, Krones A, Bush KT, Glass CK, Nigam SK, Aggarwal AK, Maas R, Rose DW, Rosenfeld MG. 2003. Eya protein phosphatase activity regulates Six1-Dach-Eya transcriptional effects in mammalian organogenesis. Nature 426:247-254.
23. Lopez-Rios J, Tessmar K, Loosli F, Wittbrodt J, Bovolenta P. 2003. Six3 and Six6 activity is modulated by members of the groucho family. Development 130:185-195.
24. Mardon G, Solomon N, Rubin GM. 1994. Dachshund encodes a nuclear protein required for normal eye and leg development in Drosophila. Development 120: 3473-3486.
25. Marion RM, Regev A, Segal E, Barash Y, Koller D, Friedman N, O'Shea EK. 2004. Sfp1 is a stress- and nutrient-sensitive regulator of ribosomal protein gene expression. Proc Natl Acad Sci U S A 101: 14315-14322.
26. Mi H, Vandergriff J, Campbell M, Narechania A, Majores W, Lewis S, Thomas PD, Ashburner M. 2003. Assessment of genome-wide protein function classification for Drosophila melanogaster. Genome Res 13:2118-2128.
27. Mitchell PJ, Tjian R. 1989. Transcriptional regulation in mammalian cells by sequence-specific DNA binding proteins. Science 245:371-378.
28. Paroush Z, Finley RL Jr, Kidd T, Wainwright SM, Ingham PW, Brent R, Ish-Horowicz D. 1994. Groucho is required for Drosophila neurogenesis, segmentation, and sex determination and interacts directly with hairy-related bHLH proteins. Cell 79:805-815.
29. Ohto H, Kamada S, Tago K, Tominaga SI, Ozaki H, Sato S, Kawakami K. 1999. Cooperation of six and eya in activation of their target genes through nuclear translocation of Eya. Mol Cell Biol 19: 6815-6824.
30. II250, a mediator of activation of gene expression in Drosophila. Science 289:2357-2360.
31. Pignoni F, Hu B, Zavitz KH, Xiao J, Garrity PA, Zipursky SL. 1997. The eye-specification proteins So and Eya form a complex and regulate multiple steps in Drosophila eye development. Cell 91:881-891.
32. Polekhina G, House CM, Traficante N, Mackay JP, Relaix F, Sassoon DA, Parker MW, Bowtell DD. 2002. Siah ubiquitin ligase is structurally related to TRAF and modulates TNF-alpha signaling. Nat Struct Biol 9:68-75.
33. Robinow S, White K. 1991. Characterization and spatial distribution of the ELAV protein during Drosophila melanogaster development. J Neurobiol 22:443-461.
34. Seimiya M, Gehring WG. 2000. The Drosophila homeobox gene optix is capable of inducing ectopic eyes by an eyeless-independent mechanism. Development 127:1879-1886.
35. Seo HC, Curtiss J, Mlodzik M, Fjose A. 1999. Six class homeobox genes in Drosophila belong to three distinct families and are involved in head development. Mech Dev 83:127-139.
36. Serikaku MA, O'Tousa JE. 1994. Sine oculis is a homeobox gene required for Drosophila visual system development. Genetics 138:1137-1150.
37. Silver SJ, Davies EL, Doyon L, Rebay I. 2003. Functional dissection of eyes absent reveals new modes of regulation within the retinal determination gene network. Mol Cell Biol 23:5989-5999.
38. Smith DB. 1983. Purification of glutathione-S-transferase fusion proteins. Methods Mol Cell Biol 4:220-229.
39. Tessmar K, Loosli F, Wittbrodt J. 2002. A screen for co-factors of Six3. Mech Dev 117:103-113.
40. Thomas PD, Campbell MJ, Kejariwal A, Mi H, Karlak B, Daverman R, Diemer K, Muruganujan A, Narechania A. 2003. PANTHER: a library of protein families and subfamilies indexed by function. Genome Res 13:2129-2141.
41. Wassarman DA, Aoyagi N, Pile LA, Schlag EM. 2000. TAF250 is required for multiple developmental events in Drosophila. Proc Natl Acad Sci U S A 97:1154-1159.
42. Wolff T, Ready DF. 1993. Pattern formation in the Drosophila retina. In: Bate M, Martinez Arias A, editors. The Development of Drosophila melanogaster. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
43. Xu Z, Norris D. 1998. The SFP1 gene product of Saccharomyces cerevisiae regulates G2/M transitions during the mitotic cell cycle and DNA-damage response. Genetics 150:1419-1428.
44. Xu PX, Cheng J, Epstein JA, Maas RL. 1997. Mouse Eya genes are expressed during limb tendon development and encode a transcriptional activation function. Proc Natl Acad Sci U S A 94:11974-11979.
45. Zhu CC, Dyer MA, Uchikawa M, Kondoh H, Lagutin OV, Oliver G. 2002. Six3-mediated auto repression and eye development requires its interaction with members of the Groucho-related family of co-repressors. Development 129:2835-2849.