-
1
-
-
28244469224
-
Stabilization of Bacillus subtilis lipase A by increasing the residual packing
-
Abraham T., Pack S.P., Yoo Y.J. Stabilization of Bacillus subtilis lipase A by increasing the residual packing. Biocatalysis and Biotransformation 2005, 23:217-224.
-
(2005)
Biocatalysis and Biotransformation
, vol.23
, pp. 217-224
-
-
Abraham, T.1
Pack, S.P.2
Yoo, Y.J.3
-
2
-
-
0029078751
-
High resistance of Escherichia coli ribonuclease HI variant with quintuple thermostabilizing mutations to thermal denaturation, acid denaturation, and proteolytic degradation
-
Akasako A., Haruki M., Oobatake M., Kanaya S. High resistance of Escherichia coli ribonuclease HI variant with quintuple thermostabilizing mutations to thermal denaturation, acid denaturation, and proteolytic degradation. Biochemistry 1995, 34:8115-8122.
-
(1995)
Biochemistry
, vol.34
, pp. 8115-8122
-
-
Akasako, A.1
Haruki, M.2
Oobatake, M.3
Kanaya, S.4
-
3
-
-
24744447220
-
Identifying and engineering ion pairs in adenylate kinases
-
Bae E., Phillips G.N. Identifying and engineering ion pairs in adenylate kinases. Journal of Biological Chemistry 2005, 280:30943-30948.
-
(2005)
Journal of Biological Chemistry
, vol.280
, pp. 30943-30948
-
-
Bae, E.1
Phillips, G.N.2
-
5
-
-
0035313593
-
Improved biocatalysts by directed evolution and rational protein design
-
Bornscheuer U.T., Pohl M. Improved biocatalysts by directed evolution and rational protein design. Current Opinion in Chemical Biology 2001, 5:137-143.
-
(2001)
Current Opinion in Chemical Biology
, vol.5
, pp. 137-143
-
-
Bornscheuer, U.T.1
Pohl, M.2
-
6
-
-
53249143979
-
Overcoming the challenges of membrane protein crystallography
-
Carpenter E.P., Beis K., Cameron A.D., Iwata S. Overcoming the challenges of membrane protein crystallography. Current Opinion in Structural Biology 2008, 18:581-586.
-
(2008)
Current Opinion in Structural Biology
, vol.18
, pp. 581-586
-
-
Carpenter, E.P.1
Beis, K.2
Cameron, A.D.3
Iwata, S.4
-
7
-
-
0030772482
-
Family-10 and family-11 xylanases differ in their capacity to enhance the bleachability of hardwood and softwood paper pulps
-
Clarke J.H., Rixon J.E., Ciruela A., Gilbert H.J., Hazlewood G.P. Family-10 and family-11 xylanases differ in their capacity to enhance the bleachability of hardwood and softwood paper pulps. Applied Microbiology and Biotechnology 1997, 48:177-183.
-
(1997)
Applied Microbiology and Biotechnology
, vol.48
, pp. 177-183
-
-
Clarke, J.H.1
Rixon, J.E.2
Ciruela, A.3
Gilbert, H.J.4
Hazlewood, G.P.5
-
8
-
-
0041387567
-
A large scale test of computational protein design: folding and stability of nine completely redesigned globular proteins
-
Dantas G., Kuhlman B., Callender D., Wong M., Baker D. A large scale test of computational protein design: folding and stability of nine completely redesigned globular proteins. Journal of Molecular Biology 2003, 332:449-460.
-
(2003)
Journal of Molecular Biology
, vol.332
, pp. 449-460
-
-
Dantas, G.1
Kuhlman, B.2
Callender, D.3
Wong, M.4
Baker, D.5
-
9
-
-
53049086149
-
Engineering hyperthermostability into a GH11 xylanase is mediated by subtle changes to protein structure
-
Dumon C., Varvak A., Wall M.A., Flint J.E., Lewis R.J., Lakey J.H., Morland C., Luginbuhl P., Healey S., Todaro T., DeSantis G., Sun M., Parra-Gessert L., Tan X.Q., Weiner D.P., Gilbert H.J. Engineering hyperthermostability into a GH11 xylanase is mediated by subtle changes to protein structure. Journal of Biological Chemistry 2008, 283:22557-22564.
-
(2008)
Journal of Biological Chemistry
, vol.283
, pp. 22557-22564
-
-
Dumon, C.1
Varvak, A.2
Wall, M.A.3
Flint, J.E.4
Lewis, R.J.5
Lakey, J.H.6
Morland, C.7
Luginbuhl, P.8
Healey, S.9
Todaro, T.10
DeSantis, G.11
Sun, M.12
Parra-Gessert, L.13
Tan, X.Q.14
Weiner, D.P.15
Gilbert, H.J.16
-
11
-
-
77249085574
-
Thermostabilization of Bacillus circulans xylanase via computational design of a flexible surface cavity
-
Joo J.C., Pohkrel S., Pack S.P., Yoo Y.J. Thermostabilization of Bacillus circulans xylanase via computational design of a flexible surface cavity. Journal of Biotechnology 2010, 146:31-39.
-
(2010)
Journal of Biotechnology
, vol.146
, pp. 31-39
-
-
Joo, J.C.1
Pohkrel, S.2
Pack, S.P.3
Yoo, Y.J.4
-
12
-
-
78650676965
-
Thermostable proteins: structural factors, features, and engineering
-
Joo J.C., Yoo Y.J. Thermostable proteins: structural factors, features, and engineering. Encyclopedia of Industrial Biotechnology: Bioprocess, Bioseparation, and Cell Technology 2010.
-
(2010)
Encyclopedia of Industrial Biotechnology: Bioprocess, Bioseparation, and Cell Technology
-
-
Joo, J.C.1
Yoo, Y.J.2
-
13
-
-
52049120812
-
Mutation of non-conserved amino acids surrounding catalytic site to shift pH optimum of Bacillus circulans xylanase
-
Kim S.H., Pokhrel S., Yoo Y.J. Mutation of non-conserved amino acids surrounding catalytic site to shift pH optimum of Bacillus circulans xylanase. Journal of Molecular Catalysis B: Enzymatic 2008, 55:130-136.
-
(2008)
Journal of Molecular Catalysis B: Enzymatic
, vol.55
, pp. 130-136
-
-
Kim, S.H.1
Pokhrel, S.2
Yoo, Y.J.3
-
14
-
-
18244373419
-
Computational thermostabilization of an enzyme
-
Korkegian A., Black M.E., Baker D., Stoddard B.L. Computational thermostabilization of an enzyme. Science 2005, 308:857-860.
-
(2005)
Science
, vol.308
, pp. 857-860
-
-
Korkegian, A.1
Black, M.E.2
Baker, D.3
Stoddard, B.L.4
-
15
-
-
0345306764
-
Design of a novel globular protein fold with atomic-level accuracy
-
Kuhlman B., Dantas G., Ireton G.C., Varani G., Stoddard B.L., Baker D. Design of a novel globular protein fold with atomic-level accuracy. Science 2003, 302:1364-1368.
-
(2003)
Science
, vol.302
, pp. 1364-1368
-
-
Kuhlman, B.1
Dantas, G.2
Ireton, G.C.3
Varani, G.4
Stoddard, B.L.5
Baker, D.6
-
16
-
-
33747859373
-
RosettaDesign server for protein design
-
Liu Y., Kuhlman B. RosettaDesign server for protein design. Nucleic Acids Research 2006, 34:W235-W238.
-
(2006)
Nucleic Acids Research
, vol.34
-
-
Liu, Y.1
Kuhlman, B.2
-
17
-
-
34548853710
-
A secondary xylan-binding site enhances the catalytic activity of a single-domain family 11 glycoside hydrolase
-
Ludwiczek M.L., Heller M., Kantner T., McIntosh L.P. A secondary xylan-binding site enhances the catalytic activity of a single-domain family 11 glycoside hydrolase. Journal of Molecular Biology 2007, 373:337-354.
-
(2007)
Journal of Molecular Biology
, vol.373
, pp. 337-354
-
-
Ludwiczek, M.L.1
Heller, M.2
Kantner, T.3
McIntosh, L.P.4
-
18
-
-
38449096799
-
Further improvement of phosphite dehydrogenase thermostability by saturation mutagelnesis
-
McLachlan M.J., Johannes T.W., Zhao H.M. Further improvement of phosphite dehydrogenase thermostability by saturation mutagelnesis. Biotechnology and Bioengineering 2008, 99:268-274.
-
(2008)
Biotechnology and Bioengineering
, vol.99
, pp. 268-274
-
-
McLachlan, M.J.1
Johannes, T.W.2
Zhao, H.M.3
-
19
-
-
33744515651
-
Thermal stabilization of Bacillus subtilis family-11 xylanase by directed evolution
-
Miyazaki K., Takenouchi M., Kondo H., Noro N., Suzuki M., Tsuda S. Thermal stabilization of Bacillus subtilis family-11 xylanase by directed evolution. Journal of Biological Chemistry 2006, 281:10236-10242.
-
(2006)
Journal of Biological Chemistry
, vol.281
, pp. 10236-10242
-
-
Miyazaki, K.1
Takenouchi, M.2
Kondo, H.3
Noro, N.4
Suzuki, M.5
Tsuda, S.6
-
20
-
-
77951587361
-
A synergistic approach to protein crystallization: combination of a fixed-arm carrier with surface entropy reduction
-
Moon A.F., Mueller G.A., Zhong X., Pedersen L.C. A synergistic approach to protein crystallization: combination of a fixed-arm carrier with surface entropy reduction. Protein Science 2010, 19:901-913.
-
(2010)
Protein Science
, vol.19
, pp. 901-913
-
-
Moon, A.F.1
Mueller, G.A.2
Zhong, X.3
Pedersen, L.C.4
-
21
-
-
3142632218
-
Protein thermostability: structure-based difference of amino acid between thermophilic and mesophilic proteins
-
Pack S.P., Yoo Y.J. Protein thermostability: structure-based difference of amino acid between thermophilic and mesophilic proteins. Journal of Biotechnology 2004, 111:269-277.
-
(2004)
Journal of Biotechnology
, vol.111
, pp. 269-277
-
-
Pack, S.P.1
Yoo, Y.J.2
-
22
-
-
36448932772
-
Molecular dynamics studies on the thermostability of family 11 xylanases
-
Purmonen M., Valjakka J., Takkinen K., Laitinen T., Rouvinen J. Molecular dynamics studies on the thermostability of family 11 xylanases. Protein Engineering Design & Selection 2007, 20:551-559.
-
(2007)
Protein Engineering Design & Selection
, vol.20
, pp. 551-559
-
-
Purmonen, M.1
Valjakka, J.2
Takkinen, K.3
Laitinen, T.4
Rouvinen, J.5
-
23
-
-
33845288649
-
Iterative saturation mutagenesis on the basis of B factors as a strategy for increasing protein thermostability
-
Reetz M.T., Carballeira D., Vogel J.A. Iterative saturation mutagenesis on the basis of B factors as a strategy for increasing protein thermostability. Angewandte Chemie International Edition 2006, 45:7745-7751.
-
(2006)
Angewandte Chemie International Edition
, vol.45
, pp. 7745-7751
-
-
Reetz, M.T.1
Carballeira, D.2
Vogel, J.A.3
-
24
-
-
36448978229
-
GPCR engineering yields high-resolution structural insights into β2-adrenergic receptor function
-
Rosenbaum D.M., Cherezov V., Hanson M.A., Rasmussen S.G.F., Foon S.T., Kobilka T.S., Choi H.J., Yao X.J., Weis W.I., Stevens R.C., Kobilka B.K. GPCR engineering yields high-resolution structural insights into β2-adrenergic receptor function. Science 2007, 318:1266-1273.
-
(2007)
Science
, vol.318
, pp. 1266-1273
-
-
Rosenbaum, D.M.1
Cherezov, V.2
Hanson, M.A.3
Rasmussen, S.G.F.4
Foon, S.T.5
Kobilka, T.S.6
Choi, H.J.7
Yao, X.J.8
Weis, W.I.9
Stevens, R.C.10
Kobilka, B.K.11
-
25
-
-
43449098518
-
Kemp elimination catalysts by computational enzyme design
-
Rothlisberger D., Khersonsky O., Wollacott A.M., Jiang L., DeChancie J., Betker J., Gallaher J.L., Althoff E.A., Zanghellini A., Dym O., Albeck S., Houk K.N., Tawfik D.S., Baker D. Kemp elimination catalysts by computational enzyme design. Nature 2008, 453:190-U194.
-
(2008)
Nature
, vol.453
-
-
Rothlisberger, D.1
Khersonsky, O.2
Wollacott, A.M.3
Jiang, L.4
DeChancie, J.5
Betker, J.6
Gallaher, J.L.7
Althoff, E.A.8
Zanghellini, A.9
Dym, O.10
Albeck, S.11
Houk, K.N.12
Tawfik, D.S.13
Baker, D.14
-
26
-
-
0037045873
-
The endoxylanases from family 11: computer analysis of protein sequences reveals important structural and phylogenetic relationships
-
Sapag A., Wouters J., Lambert C., de Ioannes P., Eyzaguirre J., Depiereux E. The endoxylanases from family 11: computer analysis of protein sequences reveals important structural and phylogenetic relationships. Journal of Biotechnology 2002, 95:109-131.
-
(2002)
Journal of Biotechnology
, vol.95
, pp. 109-131
-
-
Sapag, A.1
Wouters, J.2
Lambert, C.3
de Ioannes, P.4
Eyzaguirre, J.5
Depiereux, E.6
-
27
-
-
59649107985
-
A computational approach for the rational design of stable proteins and enzymes: optimization of surface charge-charge interactions
-
Schweiker K.L., Makhatadze G.I. A computational approach for the rational design of stable proteins and enzymes: optimization of surface charge-charge interactions. Methods in Enzymology: Computer Methods 2009, 454(Pt A):175-211.
-
(2009)
Methods in Enzymology: Computer Methods
, vol.454
, Issue.PART A
, pp. 175-211
-
-
Schweiker, K.L.1
Makhatadze, G.I.2
-
28
-
-
0036210191
-
Biotechnology of microbial xylanases: enzymology, molecular biology, and application
-
Subramaniyan S., Prema P. Biotechnology of microbial xylanases: enzymology, molecular biology, and application. Critical Reviews in Biotechnology 2002, 22:33-64.
-
(2002)
Critical Reviews in Biotechnology
, vol.22
, pp. 33-64
-
-
Subramaniyan, S.1
Prema, P.2
-
29
-
-
0027617799
-
Overexpression of the Bacillus subtilis and circulans xylanases in Escherichia coli
-
Sung W.L., Luk C.K., Zahab D.M., Wakarchuk W. Overexpression of the Bacillus subtilis and circulans xylanases in Escherichia coli. Protein Expression and Purification 1993, 4:200-206.
-
(1993)
Protein Expression and Purification
, vol.4
, pp. 200-206
-
-
Sung, W.L.1
Luk, C.K.2
Zahab, D.M.3
Wakarchuk, W.4
-
31
-
-
0040003315
-
Structural and functional properties of low molecular weight endo-1,4-beta-xylanases
-
Torronen A., Rouvinen J. Structural and functional properties of low molecular weight endo-1,4-beta-xylanases. Journal of Biotechnology 1997, 57:137-149.
-
(1997)
Journal of Biotechnology
, vol.57
, pp. 137-149
-
-
Torronen, A.1
Rouvinen, J.2
-
32
-
-
39749114873
-
Crystallographic analysis shows substrate binding at the -3 to +1 active-site subsites and at the surface of glycoside hydrolase family 11 endo-1,4-beta-xylanases
-
Vandermarliere E., Bourgois T.M., Rombouts S., Van Campenhout S., Volckaert G., Strelkov S.V., Delcour J.A., Rabijns A., Courtin C.M. Crystallographic analysis shows substrate binding at the -3 to +1 active-site subsites and at the surface of glycoside hydrolase family 11 endo-1,4-beta-xylanases. Biochemical Journal 2008, 410:71-79.
-
(2008)
Biochemical Journal
, vol.410
, pp. 71-79
-
-
Vandermarliere, E.1
Bourgois, T.M.2
Rombouts, S.3
Van Campenhout, S.4
Volckaert, G.5
Strelkov, S.V.6
Delcour, J.A.7
Rabijns, A.8
Courtin, C.M.9
-
33
-
-
0030963842
-
Mutational analysis of a surface area that is critical for the thermal stability of thermolysin-like proteases
-
Veltman O.R., Vriend G., Hardy F., Mansfeld J., VandenBurg B., Venema G., Eijsink V.G.H. Mutational analysis of a surface area that is critical for the thermal stability of thermolysin-like proteases. European Journal of Biochemistry 1997, 248:433-440.
-
(1997)
European Journal of Biochemistry
, vol.248
, pp. 433-440
-
-
Veltman, O.R.1
Vriend, G.2
Hardy, F.3
Mansfeld, J.4
VandenBurg, B.5
Venema, G.6
Eijsink, V.G.H.7
-
34
-
-
0025398721
-
WHAT IF: a molecular modeling and drug design program
-
Vriend G. WHAT IF: a molecular modeling and drug design program. Journal of Molecular Graphics 1990, 8:52-56.
-
(1990)
Journal of Molecular Graphics
, vol.8
, pp. 52-56
-
-
Vriend, G.1
-
35
-
-
0028080502
-
Thermostabilization of the Bacillus circulans xylanase by the introduction of disulfide bonds
-
Wakarchuk W.W., Sung W.L., Campbell R.L., Cunningham A., Watson D.C., Yaguchi M. Thermostabilization of the Bacillus circulans xylanase by the introduction of disulfide bonds. Protein Engineering 1994, 7:1379-1386.
-
(1994)
Protein Engineering
, vol.7
, pp. 1379-1386
-
-
Wakarchuk, W.W.1
Sung, W.L.2
Campbell, R.L.3
Cunningham, A.4
Watson, D.C.5
Yaguchi, M.6
-
37
-
-
37549048591
-
Shifting pH optimum of Bacillus circulans xylanase based on molecular modeling
-
Yang J.H., Park J.Y., Kim S.H., Yoo Y.J. Shifting pH optimum of Bacillus circulans xylanase based on molecular modeling. Journal of Biotechnology 2008, 133:294-300.
-
(2008)
Journal of Biotechnology
, vol.133
, pp. 294-300
-
-
Yang, J.H.1
Park, J.Y.2
Kim, S.H.3
Yoo, Y.J.4
-
38
-
-
3843146246
-
An efficient one-step site-directed and site-saturation mutagenesis protocol
-
Zheng L., Baumann U., Reymond J.L. An efficient one-step site-directed and site-saturation mutagenesis protocol. Nucleic Acids Research 2004, 32.
-
(2004)
Nucleic Acids Research
, vol.32
-
-
Zheng, L.1
Baumann, U.2
Reymond, J.L.3
|