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Volumn 28, Issue 1, 2011, Pages 781-791

A Functional Tom70 in the human parasite Blastocystis sp.: Implications for the evolution of the mitochondrial import apparatus

Author keywords

Blastocystis; mitochondrial protein import; phylogeny; Tom70; translocase of the outer membrane; yeast complementations

Indexed keywords

MITOCHONDRIAL PROTEIN; OUTER MEMBRANE PROTEIN; TRANSLOCASE OF OUTER MEMBRANE 70; UNCLASSIFIED DRUG;

EID: 78650474612     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msq252     Document Type: Article
Times cited : (17)

References (61)
  • 2
    • 0034607552 scopus 로고    scopus 로고
    • Homology-based method for identification of protein repeats using statistical significance estimates
    • Andrade MA, Ponting CP, Gibson TJ, Bork P. 2000. Homology-based method for identification of protein repeats using statistical significance estimates. J Mol Biol. 298:521-537.
    • (2000) J Mol Biol , vol.298 , pp. 521-537
    • Andrade, M.A.1    Ponting, C.P.2    Gibson, T.J.3    Bork, P.4
  • 3
    • 32144432437 scopus 로고    scopus 로고
    • The SWISS-MODEL workspace: A web-based environment for protein structure homology modelling
    • Arnold K, Bordoli L, Kopp J, Schwede T. 2006. The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinformatics 22:195-201.
    • (2006) Bioinformatics , vol.22 , pp. 195-201
    • Arnold, K.1    Bordoli, L.2    Kopp, J.3    Schwede, T.4
  • 4
    • 8744280622 scopus 로고    scopus 로고
    • A biophysical analysis of the tetratricopeptide repeat-rich mitochondrial import receptor, Tom70, reveals an elongated monomer that is inherently flexible, unstable, and unfolds via a multistate pathway
    • Beddoe T, Bushell SR, Perugini MA, Lithgow T, Mulhern TD, Bottomley SP, Rossjohn J. 2004. A biophysical analysis of the tetratricopeptide repeat-rich mitochondrial import receptor, Tom70, reveals an elongated monomer that is inherently flexible, unstable, and unfolds via a multistate pathway. J Biol Chem. 279:46448-46454.
    • (2004) J Biol Chem , vol.279 , pp. 46448-46454
    • Beddoe, T.1    Bushell, S.R.2    Perugini, M.A.3    Lithgow, T.4    Mulhern, T.D.5    Bottomley, S.P.6    Rossjohn, J.7
  • 6
    • 0040610676 scopus 로고    scopus 로고
    • Distribution of binding sequences for the mitochondrial import receptors Tom20, Tom22, and Tom70 in a presequence-carrying preprotein and a non-cleavable preprotein
    • Brix J, Rudiger S, Bukau B, Schneider-Mergener J, Pfanner N. 1999. Distribution of binding sequences for the mitochondrial import receptors Tom20, Tom22, and Tom70 in a presequence-carrying preprotein and a non-cleavable preprotein. J Biol Chem. 274:16522-16530.
    • (1999) J Biol Chem , vol.274 , pp. 16522-16530
    • Brix, J.1    Rudiger, S.2    Bukau, B.3    Schneider-Mergener, J.4    Pfanner, N.5
  • 7
    • 0034602242 scopus 로고    scopus 로고
    • The mitochondrial import receptor Tom70: Identification of a 25 kDa core domain with a specific binding site for preproteins
    • Brix J, Ziegler GA, Dietmeier K, Schneider-Mergener J, Schulz GE, Pfanner N. 2000. The mitochondrial import receptor Tom70: identification of a 25 kDa core domain with a specific binding site for preproteins. J Mol Biol. 303:479-488.
    • (2000) J Mol Biol , vol.303 , pp. 479-488
    • Brix, J.1    Ziegler, G.A.2    Dietmeier, K.3    Schneider-Mergener, J.4    Schulz, G.E.5    Pfanner, N.6
  • 8
    • 73149097943 scopus 로고    scopus 로고
    • Large-scale phylogenomic analyses reveal that two enigmatic protist lineages, telonemia and centroheliozoa, are related to photo-synthetic chromalveolates
    • (14 co-authors)
    • Burki F, Inagaki Y, Brate J, et al. (14 co-authors). 2009. Large-scale phylogenomic analyses reveal that two enigmatic protist lineages, telonemia and centroheliozoa, are related to photo-synthetic chromalveolates. Genome Biol Evol. 2009:231-238.
    • (2009) Genome Biol Evol , vol.2009 , pp. 231-238
    • Burki, F.1    Inagaki, Y.2    Brate, J.3
  • 9
    • 33750436226 scopus 로고    scopus 로고
    • Micro-sporidian mitosomes retain elements of the general mitochondrial targeting system
    • Burri L, Williams BA, Bursac D, Lithgow T, Keeling PJ. 2006. Micro-sporidian mitosomes retain elements of the general mitochondrial targeting system. Proc Natl Acad Sci USA. 103:15916-15920.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 15916-15920
    • Burri, L.1    Williams, B.A.2    Bursac, D.3    Lithgow, T.4    Keeling, P.J.5
  • 11
    • 33646089667 scopus 로고    scopus 로고
    • The C-terminal TPR domain of Tom70 defines a family of mitochon-drial protein import receptors found only in animals and fungi
    • Chan NC, Likic VA, Waller RF, Mulhern TD, Lithgow T. 2006. The C-terminal TPR domain of Tom70 defines a family of mitochon-drial protein import receptors found only in animals and fungi. J Mol Biol. 358:1010-1022.
    • (2006) J Mol Biol , vol.358 , pp. 1010-1022
    • Chan, N.C.1    Likic, V.A.2    Waller, R.F.3    Mulhern, T.D.4    Lithgow, T.5
  • 13
    • 33746575844 scopus 로고    scopus 로고
    • Evolution of the molecular machines for protein import into mitochondria
    • Dolezal P, Likic V, Tachezy J, Lithgow T. 2006. Evolution of the molecular machines for protein import into mitochondria. Science 313:314-318.
    • (2006) Science , vol.313 , pp. 314-318
    • Dolezal, P.1    Likic, V.2    Tachezy, J.3    Lithgow, T.4
  • 15
    • 1842429937 scopus 로고    scopus 로고
    • Ancient invasions: From endosymbionts to organelles
    • Dyall SD, Brown MT, Johnson PJ. 2004. Ancient invasions: from endosymbionts to organelles. Science 304:253-257.
    • (2004) Science , vol.304 , pp. 253-257
    • Dyall, S.D.1    Brown, M.T.2    Johnson, P.J.3
  • 16
    • 0031743421 scopus 로고    scopus 로고
    • Profile hidden Markov models
    • Eddy SR. 1998. Profile hidden Markov models. Bioinformatics 14:755-763.
    • (1998) Bioinformatics , vol.14 , pp. 755-763
    • Eddy, S.R.1
  • 17
    • 44949157290 scopus 로고    scopus 로고
    • A probabilistic model of local sequence alignment that simplifies statistical significance estimation
    • Eddy SR. 2008. A probabilistic model of local sequence alignment that simplifies statistical significance estimation. PLoS Comput Biol. 4:e1000069.
    • (2008) PLoS Comput Biol , vol.4
    • Eddy, S.R.1
  • 18
    • 33645456207 scopus 로고    scopus 로고
    • Eukaryotic evolution, changes and challenges
    • Embley TM, Martin W. 2006. Eukaryotic evolution, changes and challenges. Nature 440:623-630.
    • (2006) Nature , vol.440 , pp. 623-630
    • Embley, T.M.1    Martin, W.2
  • 19
    • 0037009087 scopus 로고    scopus 로고
    • Functions of outer membrane receptors in mitochondrial protein import
    • Endo T, Kohda D. 2002. Functions of outer membrane receptors in mitochondrial protein import. Biochim Biophys Acta. 1592:3-14.
    • (2002) Biochim Biophys Acta , vol.1592 , pp. 3-14
    • Endo, T.1    Kohda, D.2
  • 20
    • 0029619259 scopus 로고
    • Knowledge-based protein secondary structure assignment
    • Frishman D, Argos P. 1995. Knowledge-based protein secondary structure assignment. Proteins 23:566-579.
    • (1995) Proteins , vol.23 , pp. 566-579
    • Frishman, D.1    Argos, P.2
  • 21
    • 65449143575 scopus 로고    scopus 로고
    • Predicting proteomes of mitochondria and related organelles from genomic and expressed sequence tag data
    • Gaston D, Tsaousis AD, Roger AJ. 2009. Predicting proteomes of mitochondria and related organelles from genomic and expressed sequence tag data. Methods Enzymol. 457:21-47.
    • (2009) Methods Enzymol , vol.457 , pp. 21-47
    • Gaston, D.1    Tsaousis, A.D.2    Roger, A.J.3
  • 24
    • 62649113993 scopus 로고    scopus 로고
    • Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic "supergroups"
    • Hampl V, Hug L, Leigh JW, Dacks JB, Lang BF, Simpson AG, Roger AJ. 2009. Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic "supergroups.". Proc Natl Acad Sci USA. 106:3859-3864.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 3859-3864
    • Hampl, V.1    Hug, L.2    Leigh, J.W.3    Dacks, J.B.4    Lang, B.F.5    Simpson, A.G.6    Roger, A.J.7
  • 25
    • 0021767943 scopus 로고
    • A 70-kd protein of the yeast mitochondrial outer membrane is targeted and anchored via its extreme amino terminus
    • Hase T, Muller U, Riezman H, Schatz G. 1984. A 70-kd protein of the yeast mitochondrial outer membrane is targeted and anchored via its extreme amino terminus. EMBO J. 3:3157-3164.
    • (1984) EMBO J , vol.3 , pp. 3157-3164
    • Hase, T.1    Muller, U.2    Riezman, H.3    Schatz, G.4
  • 26
    • 3242887525 scopus 로고    scopus 로고
    • STRIDE: A web server for secondary structure assignment from known atomic coordinates of proteins
    • Heinig M, Frishman D. 2004. STRIDE: a web server for secondary structure assignment from known atomic coordinates of proteins. Nucleic Acids Res. 32:W500-W502.
    • (2004) Nucleic Acids Res , vol.32
    • Heinig, M.1    Frishman, D.2
  • 27
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • Huelsenbeck JP, Ronquist F. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17:754-755.
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 28
    • 0020997912 scopus 로고
    • Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
    • Kabsch W, Sander C. 1983. Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 22:2577-2637.
    • (1983) Biopolymers , vol.22 , pp. 2577-2637
    • Kabsch, W.1    Sander, C.2
  • 29
    • 0034079802 scopus 로고    scopus 로고
    • Characterization of novel sequences from distantly related taxa by walking PCR
    • Katz LA, Curtis EA, Pfunder M, Landweber LF. 2000. Characterization of novel sequences from distantly related taxa by walking PCR. Mol Phylogenet Evol. 14:318-321.
    • (2000) Mol Phylogenet Evol , vol.14 , pp. 318-321
    • Katz, L.A.1    Curtis, E.A.2    Pfunder, M.3    Landweber, L.F.4
  • 31
    • 0035910270 scopus 로고    scopus 로고
    • Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
    • Krogh A, Larsson B, von Heijne G, Sonnhammer EL. 2001. Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol. 305: 567-580.
    • (2001) J Mol Biol , vol.305 , pp. 567-580
    • Krogh, A.1    Larsson, B.2    Von Heijne, G.3    Sonnhammer, E.L.4
  • 32
    • 0344256533 scopus 로고    scopus 로고
    • Phylogenetic circumscription of Saccharomyces, Kluyveromyces and other members of the Saccharomycetaceae, and the proposal of the new genera Lachancea, Nakaseomyces, Naumovia, Vanderwaltozyma and Zygotorulaspora
    • Kurtzman CP. 2003. Phylogenetic circumscription of Saccharomyces, Kluyveromyces and other members of the Saccharomycetaceae, and the proposal of the new genera Lachancea, Nakaseomyces, Naumovia, Vanderwaltozyma and Zygotorulaspora. FEMS Yeast Res. 4:233-245.
    • (2003) FEMS Yeast Res , vol.4 , pp. 233-245
    • Kurtzman, C.P.1
  • 33
    • 33644877452 scopus 로고    scopus 로고
    • Flexible structural neighborhood-a database of protein structural similarities and alignments
    • Li Z, Ye Y, Godzik A. 2006. Flexible structural neighborhood-a database of protein structural similarities and alignments. Nucleic Acids Res. 34:D277-D280.
    • (2006) Nucleic Acids Res , vol.34
    • Li, Z.1    Ye, Y.2    Godzik, A.3
  • 36
    • 2642561822 scopus 로고    scopus 로고
    • Isolation and characterization of the mitochondrion-like organelle from Blastocystis hominis
    • Nasirudeen AM, Tan KS. 2004. Isolation and characterization of the mitochondrion-like organelle from Blastocystis hominis. J Micro-biol Methods. 58:101-109.
    • (2004) J Micro-biol Methods , vol.58 , pp. 101-109
    • Nasirudeen, A.M.1    Tan, K.S.2
  • 37
    • 34249873947 scopus 로고    scopus 로고
    • Translocation of proteins into mitochondria
    • Neupert W, Herrmann JM. 2007. Translocation of proteins into mitochondria. Annu Rev Biochem. 76:723-749.
    • (2007) Annu Rev Biochem , vol.76 , pp. 723-749
    • Neupert, W.1    Herrmann, J.M.2
  • 38
    • 40749102414 scopus 로고    scopus 로고
    • XSTREAM: A practical algorithm for identification and architecture modeling of tandem repeats in protein sequences
    • Newman AM, Cooper JB. 2007. XSTREAM: a practical algorithm for identification and architecture modeling of tandem repeats in protein sequences. BMC Bioinformatics. 8:382.
    • (2007) BMC Bioinformatics , vol.8 , pp. 382
    • Newman, A.M.1    Cooper, J.B.2
  • 41
    • 24144503755 scopus 로고    scopus 로고
    • Myosin domain evolution and the primary divergence of eukaryotes
    • Richards TA, Cavalier-Smith T. 2005. Myosin domain evolution and the primary divergence of eukaryotes. Nature 436: 1113-1118.
    • (2005) Nature , vol.436 , pp. 1113-1118
    • Richards, T.A.1    Cavalier-Smith, T.2
  • 42
    • 60349108359 scopus 로고    scopus 로고
    • Evolution: Revisiting the root of the eukaryote tree
    • Roger AJ, Simpson AG. 2009. Evolution: revisiting the root of the eukaryote tree. Curr Biol. 19:R165-R167.
    • (2009) Curr Biol , vol.19
    • Roger, A.J.1    Simpson, A.G.2
  • 44
    • 0036623258 scopus 로고    scopus 로고
    • An approximately unbiased test of phyloge-netic tree selection
    • Shimodaira H. 2002. An approximately unbiased test of phyloge-netic tree selection. Syst Biol. 51:492-508.
    • (2002) Syst Biol , vol.51 , pp. 492-508
    • Shimodaira, H.1
  • 45
    • 0036139287 scopus 로고    scopus 로고
    • CONSEL: For assessing the confidence of phylogenetic tree selection
    • Shimodaira H, Hasegawa M. 2001. CONSEL: for assessing the confidence of phylogenetic tree selection. Bioinformatics 17:1246-1247.
    • (2001) Bioinformatics , vol.17 , pp. 1246-1247
    • Shimodaira, H.1    Hasegawa, M.2
  • 46
    • 12544255323 scopus 로고    scopus 로고
    • The real "kingdoms" of eukaryotes
    • Simpson AG, Roger AJ. 2004. The real "kingdoms" of eukaryotes Curr Biol. 14:R693-R696.
    • (2004) Curr Biol , vol.14
    • Simpson, A.G.1    Roger, A.J.2
  • 47
    • 0027490731 scopus 로고
    • Recognition of errors in three-dimensional structures of proteins
    • Sippl MJ. 1993. Recognition of errors in three-dimensional structures of proteins. Proteins 17:355-362.
    • (1993) Proteins , vol.17 , pp. 355-362
    • Sippl, M.J.1
  • 48
    • 35549005324 scopus 로고    scopus 로고
    • Exploring the mitochondrial proteome of the ciliate protozoon Tetrahymena thermophila: Direct analysis by tandem mass spectrometry
    • Smith DG, Gawryluk RM, Spencer DF, Pearlman RE, Siu KW, Gray MW. 2007. Exploring the mitochondrial proteome of the ciliate protozoon Tetrahymena thermophila: direct analysis by tandem mass spectrometry. J Mol Biol. 374:837-863.
    • (2007) J Mol Biol , vol.374 , pp. 837-863
    • Smith, D.G.1    Gawryluk, R.M.2    Spencer, D.F.3    Pearlman, R.E.4    Siu, K.W.5    Gray, M.W.6
  • 49
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688-2690.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 51
    • 41049111540 scopus 로고    scopus 로고
    • Inferring confidence sets of possibly misspecified gene trees
    • Strimmer K, Rambaut A. 2002. Inferring confidence sets of possibly misspecified gene trees. Proc Biol Sci. 269:137-142.
    • (2002) Proc Biol Sci , vol.269 , pp. 137-142
    • Strimmer, K.1    Rambaut, A.2
  • 52
    • 20444451594 scopus 로고    scopus 로고
    • Tracking repeats using significance and transitivity
    • Szklarczyk R, Heringa J. 2004. Tracking repeats using significance and transitivity. Bioinformatics 20(Suppl 1):i311-i317.
    • (2004) Bioinformatics , vol.20 , Issue.SUPPL. 1
    • Szklarczyk, R.1    Heringa, J.2
  • 53
    • 27144526458 scopus 로고    scopus 로고
    • SiteFinding-PCR: A simple and efficient PCR method for chromosome walking
    • Tan G, Gao Y, Shi M, Zhang X, He S, Chen Z, An C. 2005. SiteFinding-PCR: a simple and efficient PCR method for chromosome walking. Nucleic Acids Res. 33:e122.
    • (2005) Nucleic Acids Res , vol.33
    • Tan, G.1    Gao, Y.2    Shi, M.3    Zhang, X.4    He, S.5    Chen, Z.6    An, C.7
  • 54
    • 0742323538 scopus 로고    scopus 로고
    • Endosymbiotic gene transfer: Organelle genomes forge eukaryotic chromosomes
    • Timmis JN, Ayliffe MA, Huang CY, Martin W. 2004. Endosymbiotic gene transfer: organelle genomes forge eukaryotic chromosomes. Nat Rev Genet. 5:123-135.
    • (2004) Nat Rev Genet , vol.5 , pp. 123-135
    • Timmis, J.N.1    Ayliffe, M.A.2    Huang, C.Y.3    Martin, W.4
  • 55
    • 0025398721 scopus 로고
    • WHAT IF: A molecular modeling and drug design program
    • 29
    • Vriend G. 1990. WHAT IF: a molecular modeling and drug design program. J Mol Graph. 8:52-56 29.
    • (1990) J Mol Graph , vol.8 , pp. 52-56
    • Vriend, G.1
  • 57
    • 34547566446 scopus 로고    scopus 로고
    • ProSA-web: Interactive web service for the recognition of errors in three-dimensional structures of proteins
    • Wiederstein M, Sippl MJ. 2007. ProSA-web: interactive web service for the recognition of errors in three-dimensional structures of proteins. Nucleic Acids Res. 35:W407-W410.
    • (2007) Nucleic Acids Res , vol.35
    • Wiederstein, M.1    Sippl, M.J.2
  • 58
    • 33745841363 scopus 로고    scopus 로고
    • Crystal structure of yeast mitochondrial outer membrane translocon member Tom70p
    • Wu Y, Sha B. 2006. Crystal structure of yeast mitochondrial outer membrane translocon member Tom70p. Nat Struct Mol Biol. 13:589-593.
    • (2006) Nat Struct Mol Biol , vol.13 , pp. 589-593
    • Wu, Y.1    Sha, B.2
  • 59
    • 3242887315 scopus 로고    scopus 로고
    • FATCAT: A web server for flexible structure comparison and structure similarity searching
    • Ye Y, Godzik A. 2004. FATCAT: a web server for flexible structure comparison and structure similarity searching. Nucleic Acids Res. 32:W582-W585.
    • (2004) Nucleic Acids Res , vol.32
    • Ye, Y.1    Godzik, A.2
  • 60
    • 0037428164 scopus 로고    scopus 로고
    • Molecular chaperones Hsp90 and Hsp70 deliver preproteins to the mitochondrial import receptor Tom70
    • Young JC, Hoogenraad NJ, Hartl FU. 2003. Molecular chaperones Hsp90 and Hsp70 deliver preproteins to the mitochondrial import receptor Tom70. Cell 112:41-50.
    • (2003) Cell , vol.112 , pp. 41-50
    • Young, J.C.1    Hoogenraad, N.J.2    Hartl, F.U.3


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