The plant mitochondrial proteome

Trends in Plant Science

Volumn 10, Issue 1, 2005, Pages 36-43

  Millar, A Harvey ^a   Heazlewood, Joshua L ^a   Kristensen, Brian K ^b   Braun, Hans Peter ^c   Møller, Ian M ^b  

^a UNIVERSITY OF WESTERN AUSTRALIA   (Australia)

^b TECHNICAL UNIVERSITY OF DENMARK   (Denmark)

^c LEIBNIZ UNIVERSITY HANNOVER   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS PROTEIN; PROTEOME;

ARABIDOPSIS; GENE EXPRESSION REGULATION; METABOLISM; MITOCHONDRION; OXIDATION REDUCTION REACTION; OXIDATIVE STRESS; PROTEIN PROCESSING; REVIEW; SIGNAL TRANSDUCTION; ULTRASTRUCTURE;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; GENE EXPRESSION REGULATION, PLANT; MITOCHONDRIA; OXIDATION-REDUCTION; OXIDATIVE STRESS; PROTEIN PROCESSING, POST-TRANSLATIONAL; PROTEOME; SIGNAL TRANSDUCTION;

ARABIDOPSIS;

EID: 11844294038     PISSN: 13601385     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.tplants.2004.12.002     Document Type: Review

References (70)

1. E. Richly Evolutionary diversification of mitochondrial proteomes: implications for human disease Trends Genet. 19 2003 356 362
2. J.L. Heazlewood Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins Plant Cell 16 2004 241 256
3. V.K. Mootha Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria Cell 115 2003 629 640
4. A. Sickmann The proteome of Saccharomyces cerevisiae mitochondria Proc. Natl. Acad. Sci. U. S. A. 100 2003 13207 13212
5. S.W. Taylor Characterization of the human heart mitochondrial proteome Nat. Biotechnol. 21 2003 281 286
6. J.L. Heazlewood Towards an analysis of the rice mitochondrial proteome Plant Physiol. 132 2003 230 242
7. N.V. Bykova Identification of 14 new phosphoproteins involved in important plant mitochondrial processes FEBS Lett. 540 2003 141 146
8. Y. Balmer Thioredoxin links redox to the regulation of fundamental processes of plant mitochondria Proc. Natl. Acad. Sci. U. S. A. 101 2004 2642 2647
9. B.K. Kristensen Identification of oxidised proteins in the matrix of rice leaf mitochondria by immunoprecipitation and two-dimensional liquid chromatography-tandem mass spectrometry Phytochemistry 65 2004 1839 1851
10. G. Schneider, and U. Fechner Advances in the prediction of protein targeting signals Proteomics 4 2004 1571 1580
11. M.G. Claros, and P. Vincens Computational method to predict mitochondrially imported proteins and their targeting sequences Eur. J. Biochem. 241 1996 779 786
12. K. Nakai, and P. Horton PSORT: a program for detecting sorting signals in proteins and predicting their subcellular localization Trends Biochem. Sci. 24 1999 34 36
13. H. Bannai Extensive feature detection of N-terminal protein sorting signals Bioinformatics 18 2002 298 305
14. O. Emanuelsson Predicting subcellular localization of proteins based on their N-terminal amino acid sequence J. Mol. Biol. 300 2000 1005 1016
15. I. Small Predotar: a tool for rapidly screening proteomes for N-terminal targeting sequences Proteomics 4 2004 1581 1590
16. S. Hua, and Z. Sun Support vector machine approach for protein subcellular localization prediction Bioinformatics 17 2001 721 728
17. K.C. Chou, and Y.D. Cai A new hybrid approach to predict subcellular localization of proteins by incorporating gene ontology Biochem. Biophys. Res. Commun. 311 2003 743 747
18. K.C. Chou, and Y.D. Cai Predicting subcellular localization of proteins by hybridizing functional domain composition and pseudo-amino acid composition J. Cell. Biochem. 91 2004 1197 1203
19. C. Guda MITOPRED: a genome-scale method for prediction of nucleus-encoded mitochondrial proteins Bioinformatics 20 2004 1785 1794
20. V. Kruft Proteomic approach to identify novel mitochondrial proteins in Arabidopsis Plant Physiol. 127 2001 1694 1710
21. A.H. Millar Analysis of the Arabidopsis mitochondrial proteome Plant Physiol. 127 2001 1711 1727
22. D.E. Goggin Dual intracellular localization and targeting of aminoimidazole ribonucleotide synthetase in cowpea Plant Physiol. 131 2003 1033 1041
23. L.J. Sweetlove The impact of oxidative stress on Arabidopsis mitochondria Plant J. 32 2002 891 904
24. N. Bouche Mitochondrial succinic-semialdehyde dehydrogenase of the gamma-aminobutyrate shunt is required to restrict levels of reactive oxygen intermediates in plants Proc. Natl. Acad. Sci. U. S. A. 100 2003 6843 6848
25. A. Picciocchi The plant biotin synthase reaction. Identification and characterization of essential mitochondrial accessory protein components J. Biol. Chem. 278 2003 24966 24975
26. P. Lindemann, and M. Luickner Biosynthesis of pregnane derivatives in somatic embryos of Digitalis lanata Phytochemistry 46 1997 507 513
27. S. Brugiere The hydrophobic proteome of mitochondrial membranes from Arabidopsis cell suspensions Phytochemistry 65 2004 1693 1707
28. I.M. Møller Plant mitochondria and oxidative stress: electron transport, NADPH turnover, and metabolism of reactive oxygen species Annu. Rev. Plant Physiol. Plant Mol. Biol. 52 2001 561 591
29. O. Chew Molecular definition of the ascorbate-glutathione cycle in Arabidopsis mitochondria reveals dual targeting of antioxidant defenses in plants J. Biol. Chem. 278 2003 46869 46877
30. C. Laloi Identification and characterization of a mitochondrial thioredoxin system in plants Proc. Natl. Acad. Sci. U. S. A. 98 2001 14144 14149
31. M.P. Rigobello Isolation, purification, and characterization of a rat liver mitochondrial protein disulfide isomerase Free Radic. Biol. Med. 28 2000 266 272
32. T. Trebitsh The protein disulfide isomerase of Chlamydomonas reinhartii chloroplasts J. Biol. Chem. 276 2001 4564 4569
33. N.V. Bykova Phosphorylation of formate dehydrogenase in potato tuber mitochondria J. Biol. Chem. 278 2003 26021 26030
34. S. Bentolila A pentatricopeptide repeat-containing gene restores fertility to cytoplasmic male-sterile plants Proc. Natl. Acad. Sci. U. S. A. 99 2002 10887 10892
35. S. Desloire Identification of the fertility restoration locus, Rfo, in radish, as a member of the pentatricopeptide-repeat protein family EMBO Rep. 4 2003 588 594
36. J. Bardel A survey of the plant mitochondrial proteome in relation to development Proteomics 2 2002 880 898
37. F. Hochholdinger Cytoplasmic regulation of the accumulation of nuclear-encoded proteins in the mitochondrial proteome of maize Plant J. 37 2004 199 208
38. C. Colas des Francs-Smal Variation of the polypeptide composition of mitochondria isolated from different potato tissues Plant Physiol. 98 1992 273 278
39. C. Colas des Francs-Small Identification of a major soluble protein in mitochondria from nonphotosynthetic tissues as NAD-dependant formate dehydrogenase Plant Physiol. 102 1993 1171 1177
40. C. Lenne, and R. Douce A low molecular mass heat-shock protein is localized to higher plant mitochondria Plant Physiol. 105 1994 1255 1261
41. A.A. Lund Heat-stress response of maize mitochondria Plant Physiol. 116 1998 1097 1110
42. N. Banzet Accumulation of small heat shock proteins, including mitochondrial HSP22, induced by oxidative stress and adaptive response in tomato cells Plant J. 13 1998 519 527
43. C. Hourton-Cabassa Stress induction of mitochondrial formate dehydrogenase in potato leaves Plant Physiol. 116 1998 627 635
44. G.C. Vanlerberghe, and L. McIntosh Alternative oxidase - from gene to function Annu. Rev. Plant Physiol. Plant Mol. Biol. 48 1997 703 734
45. U. Witt Mitochondrial malate dehydrogenase in Brassica napus: altered protein patterns in different nuclear mitochondrial combinations Plant Mol. Biol. 35 1997 1015 1021
46. S. Gutierres Lack of mitochondrial and nuclear-encoded subunits of complex I and alteration of the respiratory chain in Nicotiana sylvestris mitochondrial deletion mutants Proc. Natl. Acad. Sci. U. S. A. 94 1997 3436 3441
47. C. Mihr Proteomic approach for investigation of cytoplasmic male sterility (CMS) in Brassica J. Plant Physiol. 158 2001 787 794
48. I.M. Møller, and B.K. Kristensen Protein oxidation in plant mitochondria as a stress indicator Photochem. Photobiol. Sci. 3 2004 730 735
49. N.L. Taylor Environmental stress causes oxidative damage to plant mitochondria leading to inhibition of glycine decarboxylase J. Biol. Chem. 277 2002 42663 42668
50. N.L. Taylor Lipoic acid-dependent oxidative catabolism of alpha-keto acids in mitochondria provides evidence for branched-chain amino acid catabolism in Arabidopsis Plant Physiol. 134 2004 838 848
51. J. Davy de Virville Changes in functional properties of mitochondria during growth cycle of Arabidopsis thaliana cell suspension cultures Plant Physiol. Biochem. 36 1998 347 356
52. H. Schägger, and G. von Jagow Blue native electrophoresis for isolation of membrane protein complexes in enzymatically active form Anal. Biochem. 199 1991 223 231
53. L. Jansch New insights into the composition, molecular mass and stoichiometry of the protein complexes of plant mitochondria Plant J. 9 1996 357 368
54. W. Werhahn Purification and characterization of the preprotein translocase of the outer mitochondrial membrane from Arabidopsis. Identification of multiple forms of TOM20 Plant Physiol. 125 2001 943 954
55. W. Werhahn Identification of novel subunits of the TOM complex from Arabidopsis thaliana Plant Physiol. Biochem. 41 2003 407 416
56. J.L. Heazlewood Mitochondrial complex I from Arabidopsis and rice: orthologs of mammalian and fungal components coupled with plant-specific subunits Biochim. Biophys. Acta 1604 2003 159 169
57. J.L. Heazlewood The products of the mitochondrial orf25 and orfB genes are FO components in the plant F1FO ATP synthase FEBS Lett. 540 2003 201 205
58. H. Eubel New insights into the respiratory chain of plant mitochondria. Supercomplexes and a unique composition of complex II Plant Physiol. 133 2003 274 286
59. H. Eubel Identification and characterization of respirasomes in potato mitochondria Plant Physiol. 134 2004 1450 1459
60. H. Schägger, and K. Pfeiffer Supercomplexes in the respiratory chains of yeast and mammalian mitochondria EMBO J. 19 2000 1777 1783
61. R.C. Holtzapffel A tomato alternative oxidase protein with altered regulatory properties Biochim. Biophys. Acta 1606 2003 153 162
62. V.L. Herald Proteomic identification of divalent metal cation binding proteins in plant mitochondria FEBS Lett. 537 2003 96 100
63. A.H. Millar, and J.L. Heazlewood Genomic and proteomic analysis of mitochondrial carrier proteins in Arabidopsis Plant Physiol. 131 2003 443 453
64. W. Werhahn, and H.P. Braun Biochemical dissection of the mitochondrial proteome from Arabidopsis thaliana by three-dimensional gel electrophoresis Electrophoresis 23 2002 640 646
65. D.A. Wolters An automated multidimensional protein identification technology for shotgun proteomics Anal. Chem. 73 2001 5683 5690
66. G. Parisi Gamma carbonic anhydrases in plant mitochondria Plant Mol. Biol. 55 2004 193 207
67. A.H. Millar Control of ascorbate synthesis by respiration and its implications for stress responses Plant Physiol. 133 2003 443 447
68. M. Sabar ORFB is a subunit of F1F(O)-ATP synthase: insight into the basis of cytoplasmic male sterility in sunflower EMBO Rep. 4 2003 381 386
69. G. Burger The enigmatic mitochondrial ORF ymf39 codes for ATP synthase chain b Nucleic Acids Res. 31 2003 2353 2360
70. R. Lister A transcriptomic and proteomic characterization of the Arabidopsis mitochondrial protein import apparatus and its response to mitochondrial dysfunction Plant Physiol. 134 2004 777 789