메뉴 건너뛰기




Volumn 76, Issue 23, 2010, Pages 7754-7764

Evidence of distinct populations and specific subpopulations within the species Oenococcus oeni

Author keywords

[No Author keywords available]

Indexed keywords

ALLELIC DIVERSITY; BACTERIAL SPECIES; GENETIC DIVERSITY; GENOTYPIC DIVERSITY; GEOGRAPHIC ORIGINS; HOUSEKEEPING GENE; LACTIC ACID BACTERIA; MALIC ACID DEGRADATION; MALOLACTIC FERMENTATION; MICROBIAL ECO SYSTEM; MULTILOCUS SEQUENCE TYPING; NEIGHBOR JOINING; OENOCOCCUS OENI; PHYLOGENETIC GROUPS; PHYLOGENETIC TREES; RARE ALLELES; RED WINE; SOUTH AFRICA; WHITE WINES;

EID: 78650323378     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.01544-10     Document Type: Article
Times cited : (58)

References (27)
  • 1
    • 33845998160 scopus 로고    scopus 로고
    • Genclone: A computer program to analyse genotypic data, test for clonality and describe spatial clonal organization
    • Arnaud-Haond, S., and K. Belkhir. 2007. Genclone: A computer program to analyse genotypic data, test for clonality and describe spatial clonal organization. Mol. Ecol. Notes 7:15-17.
    • (2007) Mol. Ecol. Notes , vol.7 , pp. 15-17
    • Arnaud-Haond, S.1    Belkhir, K.2
  • 2
    • 78650382492 scopus 로고    scopus 로고
    • GENETIX 4.05, logiciel sous Windows TM pour la geńátique des populations
    • Belkhir, K., P. Borsa, L. Chikhi, N. Raufaste, and F. Bonhomme. 1996. GENETIX 4.05, logiciel sous Windows TM pour la geńátique des populations. http://www.genetix.univ-montp2.fr/genetix/intro.htm.
    • (1996)
    • Belkhir, K.1    Borsa, P.2    Chikhi, L.3    Raufaste, N.4    Bonhomme, F.5
  • 3
    • 33645035844 scopus 로고    scopus 로고
    • Real-time PCR for characterizing the stress response of Oenococcus oeni in a wine-like medium
    • Beltramo, C., N. Desroche, R. Tourdot-Maráchal, C. Grandvalet, and J. Guzzo. 2006. Real-time PCR for characterizing the stress response of Oenococcus oeni in a wine-like medium. Res. Microbiol. 157:267-274.
    • (2006) Res. Microbiol , vol.157 , pp. 267-274
    • Beltramo, C.1    Desroche, N.2    Tourdot-Maráchal, R.3    Grandvalet, C.4    Guzzo, J.5
  • 4
    • 61649114012 scopus 로고    scopus 로고
    • Multilocus sequence typing of Oenococcus oeni: Detection of two subpopulations shaped by intergenic recombination
    • Bilhere, E., P. M. Lucas, O. Claisse, and A. Lonvaud-Funel. 2009. Multilocus sequence typing of Oenococcus oeni: Detection of two subpopulations shaped by intergenic recombination. Appl. Environ. Microbiol. 75:1291-1300.
    • (2009) Appl. Environ. Microbiol , vol.75 , pp. 1291-1300
    • Bilhere, E.1    Lucas, P.M.2    Claisse, O.3    Lonvaud-Funel, A.4
  • 5
    • 10444271036 scopus 로고    scopus 로고
    • Allelic diversity and population structure in Oenococcus oeni as determined from sequence analysis of housekeeping genes
    • De Las Rivas, B., A. Marcobal, and R. Munoz. 2004. Allelic diversity and population structure in Oenococcus oeni as determined from sequence analysis of housekeeping genes. Appl. Environ. Microbiol. 70:7210-7219.
    • (2004) Appl. Environ. Microbiol , vol.70 , pp. 7210-7219
    • De Las Rivas, B.1    Marcobal, A.2    Munoz, R.3
  • 6
    • 84981836237 scopus 로고
    • A medium for the cultivation of lactobacilli
    • de Man, J. C., M. Rogosa, and M. E. Sharpe. 1960. A medium for the cultivation of lactobacilli. J. Appl. Microbiol. 23:130-135.
    • (1960) J. Appl. Microbiol , vol.23 , pp. 130-135
    • De Man, J.C.1    Rogosa, M.2    Sharpe, M.E.3
  • 7
    • 0028936112 scopus 로고
    • Proposal to reclassify Leuconostoc oenos as Oenococcus oeni [corrig.] gen. nov., comb. nov
    • Dicks, L. M., F. Dellaglio, and M. D. Collins. 1995. Proposal to reclassify Leuconostoc oenos as Oenococcus oeni [corrig.] gen. nov., comb. nov. Int. J. Syst. Bacteriol. 45:395-397.
    • (1995) Int. J. Syst. Bacteriol , vol.45 , pp. 395-397
    • Dicks, L.M.1    Dellaglio, F.2    Collins, M.D.3
  • 8
    • 0025176875 scopus 로고
    • Taxonomy of Leuconostoc species, particularly Leuconostoc oenos, as revealed by numerical analysis of total soluble cell protein patterns, DNA base compositions, and DNA-DNA hybridizations
    • Dicks, L. M. T., H. J. J. Van Vuuren, and F. Dellaglio. 1990. Taxonomy of Leuconostoc species, particularly Leuconostoc oenos, as revealed by numerical analysis of total soluble cell protein patterns, DNA base compositions, and DNA-DNA hybridizations. Int. J. Syst. Bacteriol. 40:83-91.
    • (1990) Int. J. Syst. Bacteriol , vol.40 , pp. 83-91
    • Dicks, L.M.T.1    Van Vuuren, H.J.J.2    Dellaglio, F.3
  • 9
    • 33750020600 scopus 로고    scopus 로고
    • Oenococcus kitaharae sp. nov., a non-acidophilic and non-malolactic- fermenting oenococcus isolated from a composting distilled shochu residue
    • Endo, A., and S. Okada. 2006. Oenococcus kitaharae sp. nov., a non-acidophilic and non-malolactic-fermenting oenococcus isolated from a composting distilled shochu residue. Int. J. Syst. Evol. Microbiol. 56:2345-2348.
    • (2006) Int. J. Syst. Evol. Microbiol , vol.56 , pp. 2345-2348
    • Endo, A.1    Okada, S.2
  • 10
    • 0013617475 scopus 로고    scopus 로고
    • Evaluation of the settling of malolactic starters within the indigenous microflora of wines
    • Gindreau, E., A. Joyeux, G. De Revel, O. Claisse, and A. Lonvaud-Funel. 1997. Evaluation of the settling of malolactic starters within the indigenous microflora of wines. J. Int. Sci. Vigne Vin 31:197-202.
    • (1997) J. Int. Sci. Vigne Vin , vol.31 , pp. 197-202
    • Gindreau, E.1    Joyeux, A.2    De Revel, G.3    Claisse, O.4    Lonvaud-Funel, A.5
  • 11
    • 30744470609 scopus 로고    scopus 로고
    • Application of phylogenetic networks in evolutionary studies
    • Huson, D. H., and D. Bryant. 2006. Application of phylogenetic networks in evolutionary studies. Mol. Biol. Evol. 23:254-267.
    • (2006) Mol. Biol. Evol , vol.23 , pp. 254-267
    • Huson, D.H.1    Bryant, D.2
  • 12
    • 0036137328 scopus 로고    scopus 로고
    • Sequence type analysis and recombinational tests (START)
    • Jolley, K. A., E. J. Feil, M. S. Chan, and M. C. Maiden. 2001. Sequence type analysis and recombinational tests (START). Bioinformatics 17:1230-1231.
    • (2001) Bioinformatics , vol.17 , pp. 1230-1231
    • Jolley, K.A.1    Feil, E.J.2    Chan, M.S.3    Maiden, M.C.4
  • 13
    • 40149108575 scopus 로고    scopus 로고
    • Pulsed-field gel electrophoresis for the discrimination of Oenococcus oeni isolates from different wine-growing regions in Germany
    • Larisika, M., H. Claus, and H. König. 2008. Pulsed-field gel electrophoresis for the discrimination of Oenococcus oeni isolates from different wine-growing regions in Germany. Int. J. Food Microbiol. 123:171-176.
    • (2008) Int. J. Food Microbiol , vol.123 , pp. 171-176
    • Larisika, M.1    Claus, H.2    König, H.3
  • 14
    • 0031039767 scopus 로고    scopus 로고
    • Sequence of DNA 16S/23S spacer region of Leuconostoc oenos (Oenococcus oeni): Application to strain differentiation
    • Le Jeune, C., and A. Lonvaud-Funel. 1997. Sequence of DNA 16S/23S spacer region of Leuconostoc oenos (Oenococcus oeni): Application to strain differentiation. Res. Microbiol. 148:79-86.
    • (1997) Res. Microbiol , vol.148 , pp. 79-86
    • Le Jeune, C.1    Lonvaud-Funel, A.2
  • 15
    • 65649117685 scopus 로고    scopus 로고
    • DnaSP v5: A software for comprehensive analysis of DNA polymorphism data
    • Librado, P., and J. Rozas. 2009. DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25:1451-1452.
    • (2009) Bioinformatics , vol.25 , pp. 1451-1452
    • Librado, P.1    Rozas, J.2
  • 16
    • 0032846740 scopus 로고    scopus 로고
    • Lactic acid bacteria in the quality improvement and depreciation of wine
    • Lonvaud-Funel, A. 1999. Lactic acid bacteria in the quality improvement and depreciation of wine. Antonie Van Leeuwenhoek 76:317-331.
    • (1999) Antonie Van Leeuwenhoek , vol.76 , pp. 317-331
    • Lonvaud-Funel, A.1
  • 17
    • 33750290454 scopus 로고    scopus 로고
    • Multilocus sequence typing of bacteria
    • Maiden, M. C. J. 2006. Multilocus sequence typing of bacteria. Annu. Rev. Microbiol. 60:561-588.
    • (2006) Annu. Rev. Microbiol , vol.60 , pp. 561-588
    • Maiden, M.C.J.1
  • 19
    • 38749153289 scopus 로고    scopus 로고
    • Role of hypermutability in the evolution of the genus Oenococcus
    • Marcobal, A. M., D. A. Sela, Y. I. Wolf, K. S. Makarova, and D. A. Mills. 2008. Role of hypermutability in the evolution of the genus Oenococcus. J. Bacteriol. 190:564-570.
    • (2008) J. Bacteriol , vol.190 , pp. 564-570
    • Marcobal, A.M.1    Sela, D.A.2    Wolf, Y.I.3    Makarova, K.S.4    Mills, D.A.5
  • 20
    • 0025707918 scopus 로고
    • A phylogenetic analysis of the genus Leuconostoc based on reverse transcriptase sequencing of 16S rRNA
    • Martinez-Murcia, A. J., and M. D. Collins. 1990. A phylogenetic analysis of the genus Leuconostoc based on reverse transcriptase sequencing of 16S rRNA. FEMS Microbiol. Lett. 58:73-83.
    • (1990) FEMS Microbiol. Lett , vol.58 , pp. 73-83
    • Martinez-Murcia, A.J.1    Collins, M.D.2
  • 21
    • 0027300577 scopus 로고
    • Phylogenetic analysis of some Leuconostocs and related organisms as determined from large-subunit rRNA gene sequences: Assessment of congruence of small- and large-subunit rRNA derived trees
    • Martinez-Murcia, A. J., N. M. Harland, and M. D. Collins. 1993. Phylogenetic analysis of some Leuconostocs and related organisms as determined from large-subunit rRNA gene sequences: Assessment of congruence of small- and large-subunit rRNA derived trees. J. Appl. Bacteriol. 74:532-541.
    • (1993) J. Appl. Bacteriol , vol.74 , pp. 532-541
    • Martinez-Murcia, A.J.1    Harland, N.M.2    Collins, M.D.3
  • 22
    • 36849085875 scopus 로고    scopus 로고
    • Correlation between indigenous Oenococcus oeni strain resistance and the presence of genetic markers
    • Renouf, V., A. Delaherche, O. Claisse, and A. Lonvaud-Funel. 2008. Correlation between indigenous Oenococcus oeni strain resistance and the presence of genetic markers. J. Ind. Microbiol. Biotechnol. 35:27-33.
    • (2008) J. Ind. Microbiol. Biotechnol , vol.35 , pp. 27-33
    • Renouf, V.1    Delaherche, A.2    Claisse, O.3    Lonvaud-Funel, A.4
  • 23
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • Tamura, K., J. Dudley, M. Nei, and S. Kumar. 2007. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24:1596-1599.
    • (2007) Mol. Biol. Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 24
    • 0021566877 scopus 로고
    • Estimating F-statistics for the analysis of population structure
    • Weir, B. S., and C. C. Cockerham. 1984. Estimating F-statistics for the analysis of population structure. Evolution 38:1358-1370.
    • (1984) Evolution , vol.38 , pp. 1358-1370
    • Weir, B.S.1    Cockerham, C.C.2
  • 25
    • 0343907175 scopus 로고    scopus 로고
    • Intraspecific genetic diversity of Oenococcus oeni as derived from DNA fingerprinting and sequence analyses
    • Zavaleta, A. I., A. J. Martínez-Murcia, and F. Rodríguez-Valera. 1997. Intraspecific genetic diversity of Oenococcus oeni as derived from DNA fingerprinting and sequence analyses. Appl. Environ. Microbiol. 63:1261-1267.
    • (1997) Appl. Environ. Microbiol , vol.63 , pp. 1261-1267
    • Zavaleta, A.I.1    Martínez-Murcia, A.J.2    Rodríguez-Valera, F.3
  • 26
    • 0029828347 scopus 로고    scopus 로고
    • 16S-23S rDNA intergenic sequences indicate that Leuconostoc oenos is phylogenetically homogeneous
    • Zavaleta, A. I., A. J. Martinez-Murcia, and F. Rodriguez-Valera. 1996. 16S-23S rDNA intergenic sequences indicate that Leuconostoc oenos is phylogenetically homogeneous. Microbiology 142:2105-2114.
    • (1996) Microbiology , vol.142 , pp. 2105-2114
    • Zavaleta, A.I.1    Martinez-Murcia, A.J.2    Rodriguez-Valera, F.3
  • 27
    • 0034518221 scopus 로고    scopus 로고
    • The Oenococcus oeni genome: Physical and genetic mapping of strain GM and comparison with the genome of a"divergent" strain, PSU-1
    • Zá-Zá, L., R. Tenreiro, and H. Paveia. 2000. The Oenococcus oeni genome: Physical and genetic mapping of strain GM and comparison with the genome of a "divergent" strain, PSU-1. Microbiology 146:3195-3204.
    • (2000) Microbiology , vol.146 , pp. 3195-3204
    • Zá-Zá, L.1    Tenreiro, R.2    Paveia, H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.