Genetic and evolutionary correlates of fine-scale recombination rate variation in drosophila persimilis

Journal of Molecular Evolution

Volumn 71, Issue 5-6, 2010, Pages 332-345

  Stevison, Laurie S ^a   Noor, Mohamed A F ^a  

^a DUKE UNIVERSITY   (United States)

Author keywords

Background selection; Biased gene conversion; Codon bias; Crossover interference; D. pseudoobscura; Hitchhiking

Indexed keywords

NUCLEOTIDE;

ANIMAL; ARTICLE; CODON; CROSSING OVER; DROSOPHILA; GENE CONVERSION; GENETIC RECOMBINATION; GENETIC VARIABILITY; GENETICS; HUMAN; INSECT CHROMOSOME; INTRON; MOLECULAR EVOLUTION; REGRESSION ANALYSIS; REGULATORY SEQUENCE; SPECIES DIFFERENCE;

ANIMALS; CHROMOSOMES, INSECT; CODON; CROSSING OVER, GENETIC; DROSOPHILA; EVOLUTION, MOLECULAR; GENE CONVERSION; GENETIC VARIATION; HUMANS; INTRONS; NUCLEOTIDES; RECOMBINATION, GENETIC; REGRESSION ANALYSIS; REGULATORY SEQUENCES, NUCLEIC ACID; SPECIES SPECIFICITY;

DROSOPHILA PERSIMILIS; DROSOPHILA PSEUDOOBSCURA;

EID: 78650008692     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00239-010-9388-1     Document Type: Article

References (96)

1. H Akashi SW Schaeffer 1997 Natural selection and the frequency distributions of "silent" DNA polymorphism in Drosophila Genetics 146 295 307
2. SF Altschul TL Madden AA Schaffer JH Zhang Z Zhang W Miller DJ Lipman 1997 Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucleic Acids Res 25 3389 3402
3. P Andolfatto JD Wall 2003 Linkage disequilibrium patterns across a recombination gradient in African Drosophila melanogaster Genetics 165 1289 1305 1:CAS:528:DC%2BD2cXmsVKlsg%3D%3D 14668383
4. D Bachtrog 2007 Reduced selection for codon usage bias in Drosophila miranda J Mol Evol 64 586 590 1:CAS:528:DC%2BD2sXkvFygs7c%3D 10.1007/s00239-006-0257-x 17457633 (Pubitemid 46717934)
5. F Baudat J Buard C Grey A Fledel-Alon C Ober M Przeworski G Coop B de Massy 2010 PRDM9 is a major determinant of meiotic recombination hotspots in humans and mice Science 327 836 840 1:CAS:528:DC%2BC3cXhslWisL8%3D 10.1126/science.1183439 20044539
6. DJ Begun CF Aquadro 1992 Levels of naturally-occurring DNA polymorphism correlate with recombination rates in Drosophila melanogaster Nature 356 519 520 1:CAS:528:DyaK38Xitlagsbs%3D 10.1038/356519a0 1560824
7. DJ Begun AK Holloway K Stevens LW Hillier YP Poh MW Hahn PM Nista CD Jones AD Kern CN Dewey L Pachter E Myers CH Langley 2007 Population genomics: whole-genome analysis of polymorphism and divergence in Drosophila simulans PLoS Biol 5 2534 2559 1:CAS:528:DC%2BD2sXhsVersr7E 10.1371/journal.pbio.0050310 (Pubitemid 350276929)
8. G Benson 1999 Tandem repeats finder: a program to analyze DNA sequences Nucleic Acids Res 27 573 580 1:CAS:528:DyaK1MXhtVKmtrg%3D 10.1093/nar/27.2.573 9862982 (Pubitemid 29210025)
9. CW Birky JB Walsh 1988 Effects of linkage on rates of molecular evolution Proc Natl Acad Sci USA 85 6414 6418 1:CAS:528:DyaL1cXmt1eqt7k%3D 10.1073/pnas.85.17.6414 3413105
10. J Buard B de Massy 2007 Playing hide and seek with mammalian meiotic crossover hotspots Trends Genet 23 301 309 1:CAS:528:DC%2BD2sXlvVOnu7Y%3D 10.1016/j.tig.2007.03.014 17434233 (Pubitemid 46770898)
11. JJ Bussell NM Pearson R Kanda DA Filatov BT Lahn 2006 Human polymorphism and human-chimpanzee divergence in pseudoautosomal region correlate with local recombination rate Gene 368 94 100 1:CAS:528:DC%2BD28XhslKhsLY%3D 10.1016/j.gene.2005.10.020 16356662 (Pubitemid 43290147)
12. B Charlesworth MT Morgan D Charlesworth 1993 The effect of deleterious mutations on neutral molecular variation Genetics 134 1289 1303 1:CAS:528:DyaK2cXht1yis7g%3D 8375663
13. B Charlesworth C Bartolome V Noel 2005 The detection of shared and ancestral polymorphisms Genet Res 86 149 157 10.1017/S0016672305007743 16207392 (Pubitemid 41825338)
14. ET Cirulli RM Kliman MAF Noor 2007 Fine-scale crossover rate heterogeneity in Drosophila pseudoobscura J Mol Evol 64 129 135 1:CAS:528:DC%2BD28XhtlCksbbN 10.1007/s00239-006-0142-7 17160365 (Pubitemid 46020865)
15. AG Clark MB Eisen DR Smith CM Bergman B Oliver TA Markow TC Kaufman M Kellis W Gelbart VN Iyer DA Pollard TB Sackton AM Larracuente ND Singh JP Abad DN Abt B Adryan M Aguade H Akashi WW Anderson CF Aquadro DH Ardell R Arguello CG Artieri DA Barbash D Barker P Barsanti P Batterham S Batzoglou D Begun A Bhutkar E Blanco SA Bosak RK Bradley AD Brand MR Brent AN Brooks RH Brown RK Butlin C Caggese BR Calvi AB de Carvalho A Caspi S Castrezana SE Celniker JL Chang C Chapple S Chatterji A Chinwalla A Civetta SW Clifton JM Comeron JC Costello JA Coyne J Daub RG David AL Delcher K Delehaunty CB Do H Ebling K Edwards T Eickbush JD Evans A Filipski S Findeiss E Freyhult L Fulton R Fulton ACL Garcia A Gardiner DA Garfield BE Garvin G Gibson D Gilbert S Gnerre J Godfrey R Good V Gotea B Gravely AJ Greenberg S Griffiths-Jones S Gross R Guigo EA Gustafson W Haerty MW Hahn DL Halligan AL Halpern GM Halter MV Han A Heger L Hillier AS Hinrichs I Holmes RA Hoskins MJ Hubisz D Hultmark MA Huntley DB Jaffe S Jagadeeshan, et al. 2007 Evolution of genes and genomes on the Drosophila phylogeny Nature 450 203 218 10.1038/nature06341 17994087
16. G Coop M Przeworski 2007 An evolutionary view of human recombination Nat Rev Genet 8 23 34 1:CAS:528:DC%2BD28Xhtlakt7bE 10.1038/nrg1947 17146469 (Pubitemid 46006047)
17. G Coop XQ Wen C Ober JK Pritchard M Przeworski 2008 High-resolution mapping of crossovers reveals extensive variation in fine-scale recombination patterns among humans Science 319 1395 1398 1:CAS:528:DC%2BD1cXislSkt7w%3D 10.1126/science.1151851 18239090 (Pubitemid 351354875)
18. GP Copenhaver 2005 Plant genetics: when not to interfere Curr Biol 15 R290 R291 1:CAS:528:DC%2BD2MXjsFKiuro%3D 10.1016/j.cub.2005.04.007 15854892 (Pubitemid 40599914)
19. GP Copenhaver EA Housworth FW Stahl 2002 Crossover interference in Arabidopsis Genetics 160 1631 1639 1:STN:280:DC%2BD383jsFCksA%3D%3D 11973316
20. SM de Procé DL Halligan PD Keightley B Charlesworth 2009 Patterns of DNA-sequence divergence between Drosophila miranda and D. pseudoobscura J Mol Evol 69 601 611 10.1007/s00239-009-9298-2
21. TG Dobzhansky 1973 Is there gene exchange between Drosophila pseudoobscura and Drosophila persimilis in their natural habitats? Am Nat 107 312 314 10.1086/282833
22. BL Dumont BA Payseur 2008 Evolution of the genomic rate of recombination in mammals Evolution 62 276 294 1:CAS:528:DC%2BD1cXivVygu7c%3D 10.1111/j.1558-5646.2007.00278.x 18067567 (Pubitemid 351294553)
23. L Duret PF Arndt 2008 The impact of recombination on nucleotide substitutions in the human genome PLoS Genet 4 e1000071 10.1371/journal.pgen. 1000071 18464896 (Pubitemid 351811507)
24. L Duret M Semon G Piganeau D Mouchiroud N Galtier 2002 Vanishing GC-rich isochores in mammalian genomes Genetics 162 1837 1847 1:CAS:528: DC%2BD3sXht1ajs7s%3D 12524353
25. JB Fan A Oliphant R Shen BG Kermani F Garcia KL Gunderson M Hansen F Steemers SL Butler P Deloukas L Galver S Hunt C McBride M Bibikova T Rubano J Chen E Wickham D Doucet W Chang D Campbell B Zhang S Kruglyak D Bentley J Haas P Rigault L Zhou J Stuelpnagel MS Chee 2003 Highly parallel SNP genotyping Cold Spring Harb Symp Quant Biol 68 69 78 1:CAS:528:DC%2BD2cXms1Gjs70%3D 10.1101/sqb.2003.68.69 15338605
26. J Felsenstein 1974 Evolutionary advantage of recombination Genetics 78 737 756 1:STN:280:DyaE2M%2FpsVWrsQ%3D%3D 4448362
27. CF Fitzpatrick LS Stevison MAF Noor 2009 Fine-scale crossover rate and interference along the XR-chromosome arm of Drosophila pseudoobscura Drosophila Information Service 92 27 29
28. E Foss R Lande FW Stahl CM Steinberg 1993 Chiasma interference as a function of genetic-distance Genetics 133 681 691 1:STN:280:DyaK3s3gt1Crsg%3D%3D 8454209
29. BS Gaut SI Wright C Rizzon J Dvorak LK Anderson 2007 Opinion- recombination: an underappreciated factor in the evolution of plant genomes Nat Rev Genet 8 77 84 1:CAS:528:DC%2BD28Xhtlakt7bF 10.1038/nrg1970 17173059 (Pubitemid 46006052)
30. JL Gerton J DeRisi R Shroff M Lichten PO Brown TD Petes 2000 Global mapping of meiotic recombination hotspots and coldspots in the yeast Saccharomyces cerevisiae Proc Natl Acad Sci USA 97 11383 11390 1:CAS:528:DC%2BD3cXnsF2ru7k%3D 10.1073/pnas.97.21.11383 11027339
31. I Gordo B Charlesworth 2001 Genetic linkage and molecular evolution Curr Biol 11 R684 R686 1:CAS:528:DC%2BD3MXmvVyrt7g%3D 10.1016/S0960-9822(01)00408-0 11553339 (Pubitemid 32835860)
32. MAM Groenen P Wahlberg M Foglio HH Cheng HJ Megens RPMA Crooijmans F Besnier M Lathrop WM Muir GKS Wong I Gut L Andersson 2009 A high-density SNP-based linkage map of the chicken genome reveals sequence features correlated with recombination rate Genome Res 19 510 519 1:CAS:528:DC%2BD1MXjt12ku74%3D 10.1101/gr.086538.108 19088305
33. PR Haddrill B Charlesworth DL Halligan P Andolfatto 2005 Patterns of intron sequence evolution in Drosophila are dependent upon length and GC content Genome Biol 6 R67 10.1186/gb-2005-6-8-r67 16086849
34. I Hellmann I Ebersberger SE Ptak S Paabo M Przeworski 2003 A neutral explanation for the correlation of diversity with recombination rates in humans Am J Hum Genet 72 1527 1535 1:CAS:528:DC%2BD3sXktlyitLw%3D 10.1086/375657 12740762 (Pubitemid 36628391)
35. I Hellmann K Prufer HK Ji MC Zody S Paabo SE Ptak 2005 Why do human diversity levels vary at a megabase scale? Genome Res 15 1222 1231 1:CAS:528:DC%2BD2MXpvF2ls7k%3D 10.1101/gr.3461105 16140990 (Pubitemid 41247912)
36. J Hey RM Kliman 2002 Interactions between natural selection, recombination and gene density in the genes of Drosophila Genetics 160 595 608 1:CAS:528:DC%2BD38XitlWrs7w%3D 11861564
37. WG Hill A Robertson 1966 Effect of linkage on limits to artificial selection Genet Res 8 269 294 1:STN:280:DyaF2s3kvFyguw%3D%3D 10.1017/S0016672300010156 5980116
38. KJ Hillers 2004 Crossover interference Curr Biol 14 R1036 R1037 1:CAS:528:DC%2BD2cXhtFGhtb%2FP 10.1016/j.cub.2004.11.038 15620632
39. EA Housworth FW Stahl 2003 Crossover interference in humans Am J Hum Genet 73 188 197 1:CAS:528:DC%2BD3sXlsVOitb0%3D 10.1086/376610 12772089 (Pubitemid 36793790)
40. N Ihara A Takasuga K Mizoshita H Takeda M Sugimoto Y Mizoguchi T Hirano T Itoh T Watanabe KM Reed WM Snelling SM Kappes CW Beattie GL Bennett Y Sugimoto 2004 A comprehensive genetic map of the cattle genome based on 3802 microsatellites Genome Res 14 1987 1998 1:CAS:528:DC%2BD2cXotl2gsrw%3D 10.1101/gr.2741704 15466297 (Pubitemid 39386513)
41. PP Khil RD Camerini-Otero 2010 Genetic crossovers are predicted accurately by the computed human recombination map PLoS Genet 6 e1000831 10.1371/journal.pgen.1000831 20126534
42. RM Kliman J Hey 1993 Reduced natural selection associated with low recombination in Drosophila melanogaster Mol Biol Evol 10 1239 1258 1:CAS:528:DyaK2cXht1KktrY%3D 8277853
43. DD Kosambi 1944 The estimation of map distances from recombination values Ann Eugen 12 172 175
44. RJ Kulathinal SM Bennett CL Fitzpatrick MAF Noor 2008 Fine-scale mapping of recombination rate in Drosophila refines its correlation to diversity and divergence Proc Natl Acad Sci USA 105 10051 10056 1:CAS:528:DC%2BD1cXptFKju74%3D 10.1073/pnas.0801848105 18621713
45. RJ Kulathinal LS Stevison MAF Noor 2009 The genomics of speciation in drosophila: diversity, divergence, and introgression estimated using low-coverage genome sequencing PLoS Genet 5 e1000550 10.1371/journal.pgen. 1000550 19578407
46. MJ Lercher LD Hurst 2002 Human SNP variability and mutation rate are higher in regions of high recombination Trends Genet 18 337 340 1:CAS:528:DC%2BD38XlsVOmu7k%3D 10.1016/S0168-9525(02)02669-0 12127766 (Pubitemid 34804439)
47. CA Machado J Hey 2003 The causes of phylogenetic conflict in a classic Drosophila species group Proc R Soc Lond Ser B 270 1193 1202 1:CAS:528:DC%2BD3sXlslOjtbg%3D 10.1098/rspb.2003.2333 (Pubitemid 36683465)
48. CA Machado RM Kliman JA Markert J Hey 2002 Inferring the history of speciation from multilocus DNA sequence data: the case of Drosophila pseudoobscura and close relatives Mol Biol Evol 19 472 488 1:CAS:528: DC%2BD38XivV2gtb8%3D 11919289
49. Ca Machado TS Haselkorn MAF Noor 2007 Evaluation of the genomic extent of effects of fixed inversion differences on intraspecific variation and interspecific gene flow in Drosophila pseudoobscura and D. persimilis Genetics 175 1289 1306 1:CAS:528:DC%2BD2sXltFKhs7Y%3D 10.1534/genetics.106.064758 17179068 (Pubitemid 46798231)
50. JF Maddox KP Davies AM Crawford DJ Hulme D Vaiman EP Cribiu BA Freking KJ Beh NE Cockett N Kang CD Riffkin R Drinkwater SS Moore KG Dodds JM Lumsden TC van Stijn SH Phua DL Adelson HR Burkin JE Broom J Buitkamp L Cambridge WT Cushwa E Gerard SM Galloway B Harrison RJ Hawken S Hiendleder HM Henry JF Medrano KA Paterson L Schibler RT Stone B van Hest 2001 An enhanced linkage map of the sheep genome comprising more than 1000 loci Genome Res 11 1275 1289 1:CAS:528:DC%2BD3MXltFaitbk%3D 10.1101/gr.GR-1350R 11435411 (Pubitemid 32677303)
51. E Mancera R Bourgon A Brozzi W Huber LM Steinmetz 2008 High-resolution mapping of meiotic crossovers and non-crossovers in yeast Nature 454 479 485 1:CAS:528:DC%2BD1cXovV2mtb4%3D 10.1038/nature07135 18615017
52. G Marais 2003 Biased gene conversion: implications for genome and sex evolution Trends Genet 19 330 338 1:CAS:528:DC%2BD3sXksVyqtbs%3D 10.1016/S0168-9525(03)00116-1 12801726 (Pubitemid 36694616)
53. G Marais D Mouchiroud L Duret 2001 Does recombination improve selection on codon usage? Lessons from nematode and fly complete genomes Proc Natl Acad Sci USA 98 5688 5692 1:CAS:528:DC%2BD3MXjs1WnsLo%3D 10.1073/pnas.091427698 11320215 (Pubitemid 32435703)
54. G Marais P Nouvellet PD Keightley B Charlesworth 2005 Intron size and exon evolution in Drosophila Genetics 170 481 485 1:CAS:528:DC%2BD2MXlslKrsrk%3D 10.1534/genetics.104.037333 15781704 (Pubitemid 40800007)
55. M Margulies M Egholm WE Altman S Attiya JS Bader LA Bemben J Berka MS Braverman YJ Chen ZT Chen SB Dewell L Du JM Fierro XV Gomes BC Godwin W He S Helgesen CH Ho GP Irzyk SC Jando MLI Alenquer TP Jarvie KB Jirage JB Kim JR Knight JR Lanza JH Leamon SM Lefkowitz M Lei J Li KL Lohman H Lu VB Makhijani KE McDade MP McKenna EW Myers E Nickerson JR Nobile R Plant BP Puc MT Ronan GT Roth GJ Sarkis JF Simons JW Simpson M Srinivasan KR Tartaro A Tomasz KA Vogt GA Volkmer SH Wang Y Wang MP Weiner PG Yu RF Begley JM Rothberg 2005 Genome sequencing in microfabricated high-density picolitre reactors Nature 437 376 380 1:CAS:528:DC%2BD2MXpvFOrt7s%3D 16056220
56. MC Marsolier-Kergoat E Yeramian 2009 GC content and recombination: reassessing the causal effects for the Saccharomyces cerevisiae genome Genetics 183 31 38 1:CAS:528:DC%2BD1MXhtlWksbnK 10.1534/genetics.109.105049 19546316
57. J Maynard Smith J Haigh 1974 Hitch-hiking effect of a favorable gene Genet Res 23 23 35 10.1017/S0016672300014634
58. G McVean 2007 The structure of linkage disequilibrium around a selective sweep Genetics 175 1395 1406 10.1534/genetics.106.062828 17194788 (Pubitemid 46798239)
59. M Menotti-Raymond VA David LA Lyons AA Schaffer JF Tomlin MK Hutton SJ O'Brien 1999 A genetic linkage map of microsatellites in the domestic cat (Felis catus) Genomics 57 9 23 1:CAS:528:DyaK1MXitFOms7o%3D 10.1006/geno.1999.5743 10191079 (Pubitemid 29187932)
60. S Myers L Bottolo C Freeman G McVean P Donnelly 2005 A fine-scale map of recombination rates and hotspots across the human genome Science 310 321 324 1:CAS:528:DC%2BD2MXhtV2hurvI 10.1126/science.1117196 16224025 (Pubitemid 41457199)
61. S Myers C Freeman A Auton P Donnelly G McVean 2008 A common sequence motif associated with recombination hot spots and genome instability in humans Nat Genet 40 1124 1129 1:CAS:528:DC%2BD1cXhtVGgtrfM 10.1038/ng.213 19165926
62. S Myers R Bowden A Tumian RE Bontrop C Freeman TS MacFie G McVean P Donnelly 2010 Drive against hotspot motifs in primates implicates the PRDM9 gene in meiotic recombination Science 327 876 879 1:CAS:528:DC%2BC3cXhslWis7s%3D 10.1126/science.1182363 20044541
63. MW Nachman 1997 Patterns of DNA variability at X-linked loci in Mus domesticus Genetics 147 1303 1316 1:CAS:528:DyaK2sXntlKqt7o%3D 9383072
64. MW Nachman 2002 Variation in recombination rate across the genome: evidence and implications Curr Opin Genet Dev 12 657 663 1:CAS:528: DC%2BD38XosFOhsrk%3D 10.1016/S0959-437X(02)00358-1 12433578 (Pubitemid 35335983)
65. O Niehuis JD Gibson MS Rosenberg BA Pannebakker T Koevoets AK Judson CA Desjardins K Kennedy D Duggan LW Beukeboom L van de Zande DM Shuker JH Werren J Gadau 2010 Recombination and its impact on the genome of the haplodiploid parasitoid wasp Nasonia PLoS One 5 e8597 10.1371/journal.pone.0008597 20087411
66. MAF Noor 2008 Connecting recombination, nucleotide diversity, and species divergence in Drosophila Fly 2 255 256 20821837
67. MA Noor 2008 Mutagenesis from meiotic recombination is not a primary driver of sequence divergence between Saccharomyces species Mol Biol Evol 25 2439 2444 1:CAS:528:DC%2BD1cXhtlyqsbvN 10.1093/molbev/msn186 18723832
68. K Paigen JP Szatkiewicz K Sawyer N Leahy ED Parvanov SHS Ng JH Graber KW Broman PM Petkov 2008 The recombinational anatomy of a mouse chromosome PLoS Genet 4 e1000119 10.1371/journal.pgen.1000119 18617997
69. J Parsch 2003 Selective constraints on intron evolution in Drosophila Genetics 165 1843 1851 1:CAS:528:DC%2BD2cXnvFOntQ%3D%3D 14704170
70. J Parsch S Novozhilov SS Saminadin-Peter KM Wong P Andolfatto 2010 On the utility of short intron sequences as a reference for the detection of positive and negative selection in Drosophila Mol Biol Evol 27 1226 1234 1:CAS:528:DC%2BC3cXmsVCqu78%3D 10.1093/molbev/msq046 20150340
71. WR Pearson DJ Lipman 1988 Improved tools for biological sequence comparison Proc Natl Acad Sci USA 85 2444 2448 1:CAS:528:DyaL1cXktFyit78%3D 10.1073/pnas.85.8.2444 3162770
72. TD Petes 2001 Meiotic recombination hot spots and cold spots Nat Rev Genet 2 360 369 1:CAS:528:DC%2BD3MXjtlGjsLo%3D 10.1038/35072078 11331902 (Pubitemid 33673074)
73. SE Ptak DA Hinds K Koehler B Nickel N Patil DG Ballinger M Przeworski KA Frazer S Paabo 2005 Fine-scale recombination patterns differ between chimpanzees and humans Nat Genet 37 429 434 1:CAS:528:DC%2BD2MXislCmur8%3D 10.1038/ng1529 15723063
74. FA Reed SA Tishkoff 2006 Positive selection can create false hotspots of recombination Genetics 172 2011 2014 1:CAS:528:DC%2BD28XjvV2ksb0%3D 10.1534/genetics.105.052183 16387873
75. S Richards Y Liu BR Bettencourt P Hradecky S Letovsky R Nielsen K Thornton MJ Hubisz R Chen RP Meisel O Couronne SJ Hua MA Smith PL Zhang J Liu HJ Bussemaker MF van Batenburg SL Howells SE Scherer E Sodergren BB Matthews MA Crosby AJ Schroeder D Ortiz-Barrientos CM Rives ML Metzker DM Muzny G Scott D Steffen DA Wheeler KC Worley P Havlak KJ Durbin A Egan R Gill J Hume MB Morgan G Miner C Hamilton YM Huang L Waldron D Verduzco KP Clerc-Blankenburg I Dubchak MAF Noor W Anderson KP White AG Clark SW Schaeffer W Gelbart GM Weinstock RA Gibbs 2005 Comparative genome sequencing of Drosophila pseudoobscura: Chromosomal, gene, and cis-element evolution Genome Res 15 1 18 1:CAS:528:DC%2BD2MXlsVSktg%3D%3D 10.1101/gr.3059305 15632085
76. MV Rockman L Kruglyak 2009 Recombinational landscape and population genomics of Caenorhabditis elegans PLoS Genet 5 e1000419 10.1371/journal.pgen. 1000419 19283065
77. K Roselius W Stephan T Stadler 2005 The relationship of nucleotide polymorphism, recombination rate and selection in wild tomato species Genetics 171 753 763 1:CAS:528:DC%2BD2MXht1Ohu7vO 10.1534/genetics.105.043877 16085701 (Pubitemid 43156462)
78. PB Samollow CM Kammerer SM Mahaney JL Schneider SJ Westenberger JL VandeBerg ES Robinson 2004 First-generation linkage map of the gray, short-tailed opossum, Monodelphis domestica, reveals genome-wide reduction in female recombination rates Genetics 166 307 329 1:CAS:528:DC%2BD2cXivFKjtLc%3D 10.1534/genetics.166.1.307 15020427 (Pubitemid 38364723)
79. MD Schweitzer 1934 Coincidence and interference in Drosophila melanogaster Proc Natl Acad Sci USA 20 154 158 1:STN:280:DC%2BD28zhvVahtQ%3D%3D 10.1073/pnas.20.3.154 16587865
80. MD Schweitzer 1935 An analytical study of crossing over in Drosophila melanogaster Genetics 20 0497 0527 1:STN:280:DC%2BD2s%2FmsVOmsg%3D%3D
81. G Sella DA Petrov M Przeworski P Andolfatto 2009 Pervasive natural selection in the Drosophila genome? PLoS Genet 5 e1000495 10.1371/journal.pgen. 1000495 19503600
82. S Shifman JT Bell RR Copley MS Taylor RW Williams R Mott J Flint 2006 A high-resolution single nucleotide polymorphism genetic map of the mouse genome PLoS Biol 4 2227 2237 1:CAS:528:DC%2BD28XhtlentbfJ 10.1371/journal.pbio.0040395 (Pubitemid 44917612)
83. T Singer YP Fan HS Chang T Zhu SP Hazen SP Briggs 2006 A high-resolution map of Arabidopsis recombinant inbred lines by whole-genome exon array hybridization PLoS Genet 2 1352 1361 1:CAS:528:DC%2BD28XhtVCgtLvK 10.1371/journal.pgen.0020144 (Pubitemid 44504787)
84. CC Spencer P Deloukas S Hunt J Mullikin S Myers B Silverman P Donnelly D Bentley G McVean 2006 The influence of recombination on human genetic diversity PLoS Genet 2 e148 10.1371/journal.pgen.0020148 17044736 (Pubitemid 44504789)
85. FW Stahl HM Foss LS Young RH Borts MFF Abdullah GP Copenhaver 2004 Does crossover interference count in Saccharomyces cerevisiae? Genetics 168 35 48 1:CAS:528:DC%2BD2cXptl2mtrs%3D 10.1534/genetics.104.027789 15454525 (Pubitemid 39346577)
86. WW Steiner EM Steiner AR Girvin LE Plewik 2009 Novel nucleotide sequence motifs that produce hotspots of meiotic recombination in Schizosaccharomyces pombe Genetics 182 459 469 1:CAS:528:DC%2BD1MXosFGjtLw%3D 10.1534/genetics.109. 101253 19363124
87. W Stephan CH Langley 1998 DNA polymorphism in Lycopersicon and crossing-over per physical length Genetics 150 1585 1593 1:CAS:528: DyaK1MXitVeluw%3D%3D 9832534
88. JN Strathern BK Shafer CB Mcgill 1995 DNA-synthesis errors associated with double-strand-break repair Genetics 140 965 972 1:CAS:528: DyaK28Xht1Gjtb4%3D 7672595
89. AH Sturtevant 1913 The linear arrangement of six sex-linked factors in Drosophila, as shown by their mode of association J Exp Zool 14 43 59 10.1002/jez.1400140104
90. MI Tenaillon J U'Ren O Tenaillon BS Gaut 2004 Selection versus demography: a multilocus investigation of the domestication process in maize Mol Biol Evol 21 1214 1225 1:CAS:528:DC%2BD2cXltlKlsrk%3D 10.1093/molbev/msh102 15014173 (Pubitemid 38823724)
91. H van Os S Andrzejewski E Bakker I Barrena GJ Bryan B Caromel B Ghareeb E Isidore W de Jong P van Koert V Lefebvre D Milbourne E Ritter JNAMR van der Voort F Rousselle-Bourgeois J van Vliet R Waugh RGF Visser J Bakker HJ van Eck 2006 Construction of a 10,000-marker ultradense genetic recombination map of potato: providing a framework for accelerated gene isolation and a genomewide physical map Genetics 173 1075 1087 10.1534/genetics.106.055871 16582432 (Pubitemid 43945920)
92. A Weinstein 1918 Coincidence of crossing over in Drosophila melanogaster (Ampelophila) Genetics 3 135 172 1:STN:280:DC%2BD2s%2FmsValtA%3D%3D 17245901
93. W Winckler SR Myers DJ Richter RC Onofrio GJ McDonald RE Bontrop GAT McVean SB Gabriel D Reich P Donnelly D Altshuler 2005 Comparison of fine-scale recombination rates in humans and chimpanzees Science 308 107 111 1:CAS:528:DC%2BD2MXivVaqsrs%3D 10.1126/science.1105322 15705809 (Pubitemid 40471008)
94. AK Wong AL Ruhe BL Dumont KR Robertson G Guerrero SM Shull JS Ziegle LV Millon KW Broman BA Payseur MW Neff 2010 A comprehensive linkage map of the dog genome Genetics 184 595 605 10.1534/genetics.109.106831 19966068
95. K Zeng B Charlesworth 2010 Studying patterns of recent evolution at synonymous sites and intronic sites in Drosophila melanogaster J Mol Evol 70 116 128 1:CAS:528:DC%2BC3cXhvFeht70%3D 10.1007/s00239-009-9314-6 20041239
96. KR Zenger LM McKenzie DW Cooper 2002 The first comprehensive genetic linkage map of a marsupial: the tammar wallaby (Macropus eugenii) Genetics 162 321 330 1:CAS:528:DC%2BD38Xotl2gsbk%3D 12242243