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Volumn 11, Issue 11, 2010, Pages

Comparative genomics reveals birth and death of fragile regions in mammalian evolution

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIRTH; CHROMOSOME ANALYSIS; CHROMOSOME BREAKAGE; CHROMOSOME DUPLICATION; CHROMOSOME REARRANGEMENT; DEATH; GENOME ANALYSIS; GENOMICS; HUMAN GENOME; LIFESPAN; MAMMAL; MOLECULAR EVOLUTION; MOLECULAR PHYLOGENY; ANIMAL; BIOLOGICAL MODEL; CHROMOSOME FRAGILE SITE; COMPARATIVE STUDY; GENE REARRANGEMENT; GENETICS; HUMAN; METHODOLOGY;

EID: 78649457819     PISSN: 14747596     EISSN: 1474760X     Source Type: Journal    
DOI: 10.1186/gb-2010-11-11-r117     Document Type: Article
Times cited : (24)

References (54)
  • 2
    • 0000791476 scopus 로고
    • Lengths of chromosomal segments conserved since divergence of man and mouse.
    • Nadeau JH, Taylor BA. Lengths of chromosomal segments conserved since divergence of man and mouse. Proc Natl Acad Sci U S A 1984, 81:814-818.
    • (1984) Proc Natl Acad Sci U S A , vol.81 , pp. 814-818
    • Nadeau, J.H.1    Taylor, B.A.2
  • 3
    • 0038271921 scopus 로고    scopus 로고
    • Human and mouse genomic sequences reveal extensive breakpoint reuse in mammalian evolution.
    • Pevzner P, Tesler G. Human and mouse genomic sequences reveal extensive breakpoint reuse in mammalian evolution. Proc Natl Acad Sci U S A 2003, 100:7672-7677.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 7672-7677
    • Pevzner, P.1    Tesler, G.2
  • 4
    • 23844460187 scopus 로고    scopus 로고
    • Chromosomal breakpoint reuse in genome sequence rearrangement.
    • Sankoff D, Trinh P. Chromosomal breakpoint reuse in genome sequence rearrangement. Journal of Computational Biology 2005, 12:812-821.
    • (2005) Journal of Computational Biology , vol.12 , pp. 812-821
    • Sankoff, D.1    Trinh, P.2
  • 5
    • 33646260191 scopus 로고    scopus 로고
    • The signal in the genome.
    • Sankoff D. The signal in the genome. PLoS Comput Biol 2006, 2:e35.
    • (2006) PLoS Comput Biol , vol.2
    • Sankoff, D.1
  • 6
    • 70350536712 scopus 로고    scopus 로고
    • On computing the breakpoint reuse rate in rearrangement scenarios.
    • Bergeron A, Mixtacki J, Stoye J. On computing the breakpoint reuse rate in rearrangement scenarios. Lecture Notes in Bioinformatics 2008, 5267:226-240.
    • (2008) Lecture Notes in Bioinformatics , vol.5267 , pp. 226-240
    • Bergeron, A.1    Mixtacki, J.2    Stoye, J.3
  • 7
    • 33645766047 scopus 로고    scopus 로고
    • The fragile breakage versus random breakage models of chromosome evolution.
    • 1378107, 16501665
    • Peng Q, Pevzner PA, Tesler G. The fragile breakage versus random breakage models of chromosome evolution. PLoS Computational Biology 2006, 2:e14. 1378107, 16501665.
    • (2006) PLoS Computational Biology , vol.2
    • Peng, Q.1    Pevzner, P.A.2    Tesler, G.3
  • 8
    • 36949006683 scopus 로고    scopus 로고
    • Are there rearrangement hotspots in the human genome?.
    • 2065889, 17997591
    • Alekseyev MA, Pevzner PA. Are there rearrangement hotspots in the human genome?. PLoS Computational Biology 2007, 3:e209. 2065889, 17997591.
    • (2007) PLoS Computational Biology , vol.3
    • Alekseyev, M.A.1    Pevzner, P.A.2
  • 13
    • 28844452823 scopus 로고    scopus 로고
    • Hotspots of mutation and breakage in dog and human chromosomes.
    • 1356117, 16339377
    • Webber C, Ponting CP. Hotspots of mutation and breakage in dog and human chromosomes. Genome Research 2005, 15:1787-1797. 1356117, 16339377.
    • (2005) Genome Research , vol.15 , pp. 1787-1797
    • Webber, C.1    Ponting, C.P.2
  • 14
    • 33751193501 scopus 로고    scopus 로고
    • Recurring genomic breaks in independent lineages support genomic fragility.
    • 1636669, 17090315
    • Hinsch H, Hannenhalli S. Recurring genomic breaks in independent lineages support genomic fragility. BMC Evolutionary Biology 2006, 6:90. 1636669, 17090315.
    • (2006) BMC Evolutionary Biology , vol.6 , pp. 90
    • Hinsch, H.1    Hannenhalli, S.2
  • 15
    • 34249697132 scopus 로고    scopus 로고
    • Is mammalian chromosomal evolution driven by regions of genome fragility?.
    • 1794428, 17156441
    • Ruiz-Herrera A, Castresana J, Robinson TJ. Is mammalian chromosomal evolution driven by regions of genome fragility?. Genome Biology 2006, 7:R115. 1794428, 17156441.
    • (2006) Genome Biology , vol.7
    • Ruiz-Herrera, A.1    Castresana, J.2    Robinson, T.J.3
  • 16
    • 27644571041 scopus 로고    scopus 로고
    • 7E olfactory receptor gene clusters and evolutionary chromosome rearrangements.
    • Yue Y, Haaf T. 7E olfactory receptor gene clusters and evolutionary chromosome rearrangements. Cytogenet Genome Res 2006, 112:6-10.
    • (2006) Cytogenet Genome Res , vol.112 , pp. 6-10
    • Yue, Y.1    Haaf, T.2
  • 18
    • 33947201571 scopus 로고    scopus 로고
    • Analysis of segmental duplications reveals a distinct pattern of continuation-of-synteny between human and mouse genomes.
    • Mehan MR, Almonte M, Slaten E, Freimer NB, Rao PN, Ophoff RA. Analysis of segmental duplications reveals a distinct pattern of continuation-of-synteny between human and mouse genomes. Human Genetics 2007, 121:93-100.
    • (2007) Human Genetics , vol.121 , pp. 93-100
    • Mehan, M.R.1    Almonte, M.2    Slaten, E.3    Freimer, N.B.4    Rao, P.N.5    Ophoff, R.A.6
  • 21
    • 38349140443 scopus 로고    scopus 로고
    • Chromosomal instability in Afrotheria: fragile sites, evolutionary breakpoints and phylogenetic inference from genome sequence assemblies.
    • 2211313, 17958882
    • Ruiz-Herrera A, Robinson T. Chromosomal instability in Afrotheria: fragile sites, evolutionary breakpoints and phylogenetic inference from genome sequence assemblies. BMC Evolutionary Biology 2007, 7:199. 2211313, 17958882.
    • (2007) BMC Evolutionary Biology , vol.7 , pp. 199
    • Ruiz-Herrera, A.1    Robinson, T.2
  • 22
    • 50649108412 scopus 로고    scopus 로고
    • Tracking the complex flow of chromosome rearrangements from the Hominoidea Ancestor to extant Hylobates and Nomascus Gibbons by high-resolution synteny mapping.
    • 2527702, 18552313
    • Misceo D, Capozzi O, Roberto R, Dell'Oglio MP, Rocchi M, Stanyon R, Archidiacono N. Tracking the complex flow of chromosome rearrangements from the Hominoidea Ancestor to extant Hylobates and Nomascus Gibbons by high-resolution synteny mapping. Genome Research 2008, 18:1530-1537. 2527702, 18552313.
    • (2008) Genome Research , vol.18 , pp. 1530-1537
    • Misceo, D.1    Capozzi, O.2    Roberto, R.3    Dell'Oglio, M.P.4    Rocchi, M.5    Stanyon, R.6    Archidiacono, N.7
  • 23
    • 52049124740 scopus 로고    scopus 로고
    • Chromosomal rearrangement inferred from comparisons of 12 Drosophila genomes.
    • 2475759, 18622036
    • Bhutkar A, Schaeffer SW, Russo SM, Xu M, Smith TF, Gelbart WM. Chromosomal rearrangement inferred from comparisons of 12 Drosophila genomes. Genetics 2008, 179:1657-1680. 2475759, 18622036.
    • (2008) Genetics , vol.179 , pp. 1657-1680
    • Bhutkar, A.1    Schaeffer, S.W.2    Russo, S.M.3    Xu, M.4    Smith, T.F.5    Gelbart, W.M.6
  • 24
    • 58149159908 scopus 로고    scopus 로고
    • Evolutionary plasticity and cancer breakpoints in human chromosome 3.
    • Ruiz-Herrera A, Robinson TJ. Evolutionary plasticity and cancer breakpoints in human chromosome 3. BioEssays 2008, 30:1126-1137.
    • (2008) BioEssays , vol.30 , pp. 1126-1137
    • Ruiz-Herrera, A.1    Robinson, T.J.2
  • 25
    • 66049138940 scopus 로고    scopus 로고
    • Breakpoint regions and homologous synteny blocks in chromosomes have different evolutionary histories.
    • 2675965, 19342477
    • Larkin DM, Pape G, Donthu R, Auvil L, Welge M, Lewin HA. Breakpoint regions and homologous synteny blocks in chromosomes have different evolutionary histories. Genome Research 2009, 19:770-777. 2675965, 19342477.
    • (2009) Genome Research , vol.19 , pp. 770-777
    • Larkin, D.M.1    Pape, G.2    Donthu, R.3    Auvil, L.4    Welge, M.5    Lewin, H.A.6
  • 26
    • 70349160409 scopus 로고    scopus 로고
    • Long-range regulation is a major driving force in maintaining genome integrity.
    • 2741452, 19682388
    • Mongin E, Dewar K, Blanchette M. Long-range regulation is a major driving force in maintaining genome integrity. BMC Evolutionary Biology 2009, 9:203. 2741452, 19682388.
    • (2009) BMC Evolutionary Biology , vol.9 , pp. 203
    • Mongin, E.1    Dewar, K.2    Blanchette, M.3
  • 28
    • 69049086389 scopus 로고    scopus 로고
    • Distinct retroelement classes define evolutionary breakpoints demarcating sites of evolutionary novelty.
    • 2736999, 19630942
    • Longo M, Carone D, Program NCS, Green E, O'Neill M, O'Neill R. Distinct retroelement classes define evolutionary breakpoints demarcating sites of evolutionary novelty. BMC Genomics 2009, 10:334. 2736999, 19630942.
    • (2009) BMC Genomics , vol.10 , pp. 334
    • Longo, M.1    Carone, D.2    Program, N.C.S.3    Green, E.4    O'Neill, M.5    O'Neill, R.6
  • 29
    • 77952307323 scopus 로고    scopus 로고
    • Role of chromosomal rearrangements and conserved chromosome regions in amniote evolution.
    • [Article in Russian]
    • Larkin D. Role of chromosomal rearrangements and conserved chromosome regions in amniote evolution. Mol Gen Mikrobiol Virusol 2010, 25:3-8. [Article in Russian].
    • (2010) Mol Gen Mikrobiol Virusol , vol.25 , pp. 3-8
    • Larkin, D.1
  • 31
    • 77955147087 scopus 로고    scopus 로고
    • Fragile regions and not functional constraints predominate in shaping gene organization in the genus Drosophila.
    • von Grotthuss M, Ashburner M, Ranz JM. Fragile regions and not functional constraints predominate in shaping gene organization in the genus Drosophila. Genome Research 2010, 20:1084-1096.
    • (2010) Genome Research , vol.20 , pp. 1084-1096
    • von Grotthuss, M.1    Ashburner, M.2    Ranz, J.M.3
  • 32
    • 0141815478 scopus 로고    scopus 로고
    • Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes.
    • Kent WJ, Baertsch R, Hinrichs A, Miller W, Haussler D. Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes. Proc Natl Acad Sci U S A 2003, 100:11484-11489.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 11484-11489
    • Kent, W.J.1    Baertsch, R.2    Hinrichs, A.3    Miller, W.4    Haussler, D.5
  • 34
    • 0037264074 scopus 로고    scopus 로고
    • Genome rearrangements in mammalian evolution: lessons from human and mouse genomes.
    • 430962, 12529304
    • Pevzner P, Tesler G. Genome rearrangements in mammalian evolution: lessons from human and mouse genomes. Genome Research 2003, 13:37-45. 430962, 12529304.
    • (2003) Genome Research , vol.13 , pp. 37-45
    • Pevzner, P.1    Tesler, G.2
  • 35
    • 0041878461 scopus 로고    scopus 로고
    • Enrichment of segmental duplications in regions of breaks of synteny between the human and mouse genomes suggest their involvement in evolutionary rearrangements.
    • Armengol L, Pujana MA, Cheung J, Scherer SW, Estivill X. Enrichment of segmental duplications in regions of breaks of synteny between the human and mouse genomes suggest their involvement in evolutionary rearrangements. Human Molecular Genetics 2003, 12:2201-2208.
    • (2003) Human Molecular Genetics , vol.12 , pp. 2201-2208
    • Armengol, L.1    Pujana, M.A.2    Cheung, J.3    Scherer, S.W.4    Estivill, X.5
  • 36
    • 33646194956 scopus 로고    scopus 로고
    • Stability of large segmental duplications in the yeast genome.
    • 1456401, 16489235
    • Koszul R, Dujon B, Fischer G. Stability of large segmental duplications in the yeast genome. Genetics 2006, 172:2211-2222. 1456401, 16489235.
    • (2006) Genetics , vol.172 , pp. 2211-2222
    • Koszul, R.1    Dujon, B.2    Fischer, G.3
  • 37
    • 28944449814 scopus 로고    scopus 로고
    • A hotspot of gene order rearrangement by tandem duplication and random loss in the vertebrate mitochondrial genome.
    • San Mauro D, Gower DJ, Zardoya R, Wilkinson M. A hotspot of gene order rearrangement by tandem duplication and random loss in the vertebrate mitochondrial genome. Mol Biol Evol 2006, 23:227-234.
    • (2006) Mol Biol Evol , vol.23 , pp. 227-234
    • San Mauro, D.1    Gower, D.J.2    Zardoya, R.3    Wilkinson, M.4
  • 38
    • 66049098213 scopus 로고    scopus 로고
    • Recovering genome rearrangements in the mammalian phylogeny.
    • 2675982, 19411607
    • Zhao H, Bourque G. Recovering genome rearrangements in the mammalian phylogeny. Genome Research 2009, 19:934-942. 2675982, 19411607.
    • (2009) Genome Research , vol.19 , pp. 934-942
    • Zhao, H.1    Bourque, G.2
  • 40
    • 26844482093 scopus 로고    scopus 로고
    • A fine-scale map of recombination rates and hotspots across the human genome.
    • Myers S, Bottolo L, Freeman C, McVean G, Donnelly P. A fine-scale map of recombination rates and hotspots across the human genome. Science 2005, 310:321-324.
    • (2005) Science , vol.310 , pp. 321-324
    • Myers, S.1    Bottolo, L.2    Freeman, C.3    McVean, G.4    Donnelly, P.5
  • 41
    • 0034821951 scopus 로고    scopus 로고
    • Genome evolution at the genus level: comparison of three complete genomes of Hyperthermophilic Archaea.
    • 311118, 11381026
    • Lecompte O, Ripp R, Puzos-Barbe V, Duprat S, Heilig R, Dietrich J, Thierry JC, Poch O. Genome evolution at the genus level: comparison of three complete genomes of Hyperthermophilic Archaea. Genome Research 2001, 11:981-993. 311118, 11381026.
    • (2001) Genome Research , vol.11 , pp. 981-993
    • Lecompte, O.1    Ripp, R.2    Puzos-Barbe, V.3    Duprat, S.4    Heilig, R.5    Dietrich, J.6    Thierry, J.C.7    Poch, O.8
  • 42
    • 0042027896 scopus 로고    scopus 로고
    • Structural dynamics of eukaryotic chromosome evolution.
    • Eichler EE, Sankoff D. Structural dynamics of eukaryotic chromosome evolution. Science 2003, 301:793-797.
    • (2003) Science , vol.301 , pp. 793-797
    • Eichler, E.E.1    Sankoff, D.2
  • 43
    • 52449130150 scopus 로고    scopus 로고
    • Multi-break rearrangements and breakpoint re-uses: from circular to linear genomes.
    • Alekseyev MA. Multi-break rearrangements and breakpoint re-uses: from circular to linear genomes. Journal of Computational Biology 2008, 15:1117-1131.
    • (2008) Journal of Computational Biology , vol.15 , pp. 1117-1131
    • Alekseyev, M.A.1
  • 44
  • 47
    • 24044535485 scopus 로고    scopus 로고
    • Efficient sorting of genomic permutations by translocation, inversion and block interchange.
    • Yancopoulos S, Attie O, Friedberg R. Efficient sorting of genomic permutations by translocation, inversion and block interchange. Bioinformatics 2005, 21:3340-3346.
    • (2005) Bioinformatics , vol.21 , pp. 3340-3346
    • Yancopoulos, S.1    Attie, O.2    Friedberg, R.3
  • 50
    • 66049158304 scopus 로고    scopus 로고
    • Breakpoint graphs and ancestral genome reconstructions.
    • 2675983, 19218533
    • Alekseyev MA, Pevzner PA. Breakpoint graphs and ancestral genome reconstructions. Genome Research 2009, 19:943-957. 2675983, 19218533.
    • (2009) Genome Research , vol.19 , pp. 943-957
    • Alekseyev, M.A.1    Pevzner, P.A.2
  • 51
    • 60849119540 scopus 로고    scopus 로고
    • Inversion-based genomic signatures.
    • 2648787, 19208174
    • Swenson K, Moret B. Inversion-based genomic signatures. BMC Bioinformatics 2009, 10:S7. 2648787, 19208174.
    • (2009) BMC Bioinformatics , vol.10
    • Swenson, K.1    Moret, B.2
  • 52
    • 77958042099 scopus 로고    scopus 로고
    • Efficient sampling of parsimonious inversion histories with application to genome rearrangement in yersinia.
    • Miklos I, Darling AE. Efficient sampling of parsimonious inversion histories with application to genome rearrangement in yersinia. Genome Biol Evol 2009, 1:153-164.
    • (2009) Genome Biol Evol , vol.1 , pp. 153-164
    • Miklos, I.1    Darling, A.E.2
  • 54
    • 68849106044 scopus 로고    scopus 로고
    • Analysis of fine-scale mammalian evolutionary breakpoints provides new insight into their relation to genome organisation.
    • 2722678, 19630943
    • Lemaitre C, Zaghloul L, Sagot MF, Gautier C, Arneodo A, Tannier E, Audit B. Analysis of fine-scale mammalian evolutionary breakpoints provides new insight into their relation to genome organisation. BMC Genomics 2009, 10:335. 2722678, 19630943.
    • (2009) BMC Genomics , vol.10 , pp. 335
    • Lemaitre, C.1    Zaghloul, L.2    Sagot, M.F.3    Gautier, C.4    Arneodo, A.5    Tannier, E.6    Audit, B.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.