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Volumn 9, Issue 1, 2009, Pages

Long-range regulation is a major driving force in maintaining genome integrity

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CHROMOSOME BREAKAGE; DNA STRAND BREAKAGE; GENE DELETION; GENE REARRANGEMENT; GENOME; GENOMICS; HOUSEKEEPING GENE; HUMAN; MACHINE LEARNING; NONHUMAN; TRANSCRIPTION REGULATION; ANIMAL; ARTIFICIAL INTELLIGENCE; CHICKEN; CHROMOSOME MAP; COMPARATIVE GENOMIC HYBRIDIZATION; GENE EXPRESSION REGULATION; GENETICS; GENOMIC INSTABILITY; METHODOLOGY; MOLECULAR EVOLUTION; OPOSSUM; SYNTENY;

EID: 70349160409     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-9-203     Document Type: Article
Times cited : (21)

References (36)
  • 1
    • 27744585974 scopus 로고    scopus 로고
    • Chromosome evolution in eukaryotes: A multi-kingdom perspective
    • 10.1016/j.tig.2005.09.009. 16242204
    • Chromosome evolution in eukaryotes: a multi-kingdom perspective. A Coghlan EE Eichler SG Oliver AH Paterson L Stein, Trends Genet 2005 21 12 673 82 10.1016/j.tig.2005.09.009 16242204
    • (2005) Trends Genet , vol.21 , Issue.12 , pp. 673-82
    • Coghlan, A.1    Eichler, E.E.2    Oliver, S.G.3    Paterson, A.H.4    Stein, L.5
  • 2
    • 0038271921 scopus 로고    scopus 로고
    • Human and mouse genomic sequences reveal extensive breakpoint reuse in mammalian evolution
    • 10.1073/pnas.1330369100. 12810957
    • Human and mouse genomic sequences reveal extensive breakpoint reuse in mammalian evolution. P Pevzner G Tesler, Proc Natl Acad Sci USA 2003 100 13 7672 7 10.1073/pnas.1330369100 12810957
    • (2003) Proc Natl Acad Sci USA , vol.100 , Issue.13 , pp. 7672-7
    • Pevzner, P.1    Tesler, G.2
  • 3
    • 33645766047 scopus 로고    scopus 로고
    • The fragile breakage versus random breakage models of chromosome evolution
    • 10.1371/journal.pcbi.0020014. 16501665
    • The fragile breakage versus random breakage models of chromosome evolution. Q Peng PA Pevzner G Tesler, PLoS Comput Biol 2006 2 2 14 10.1371/journal.pcbi.0020014 16501665
    • (2006) PLoS Comput Biol , vol.2 , Issue.2 , pp. 514
    • Peng, Q.1    Pevzner, P.A.2    Tesler, G.3
  • 4
    • 0141817723 scopus 로고    scopus 로고
    • Chromosome rearrangements in evolution: From gene order to genome sequence and back
    • 10.1073/pnas.2035002100. 14506293
    • Chromosome rearrangements in evolution: From gene order to genome sequence and back. D Sankoff JH Nadeau, Proc Natl Acad Sci USA 2003 100 20 11188 9 10.1073/pnas.2035002100 14506293
    • (2003) Proc Natl Acad Sci USA , vol.100 , Issue.20 , pp. 11188-9
    • Sankoff, D.1    Nadeau, J.H.2
  • 5
    • 0032770572 scopus 로고    scopus 로고
    • Gene order breakpoint evidence in animal mitochondrial phylogeny
    • 10.1007/PL00006542. 10441671
    • Gene order breakpoint evidence in animal mitochondrial phylogeny. M Blanchette T Kunisawa D Sankoff, J Mol Evol 1999 49 2 193 203 10.1007/PL00006542 10441671
    • (1999) J Mol Evol , vol.49 , Issue.2 , pp. 193-203
    • Blanchette, M.1    Kunisawa, T.2    Sankoff, D.3
  • 6
    • 44449091611 scopus 로고    scopus 로고
    • Gene rearrangement analysis and ancestral order inference from chloroplast genomes with inverted repeat
    • 10.1186/1471-2164-9-S1-S25. 18366615
    • Gene rearrangement analysis and ancestral order inference from chloroplast genomes with inverted repeat. F Yue L Cui CW dePamphilis BME Moret J Tang, BMC Genomics 2008 9 Suppl 1 25 10.1186/1471-2164-9-S1-S25 18366615
    • (2008) BMC Genomics , vol.9 , Issue.SUPPL. 1 , pp. 1925
    • Yue, F.1    Cui, L.2    Depamphilis, C.W.3    Moret, B.M.E.4    Tang, J.5
  • 7
    • 0000791476 scopus 로고
    • Lengths of chromosomal segments conserved since divergence of man and mouse
    • 10.1073/pnas.81.3.814. 6583681
    • Lengths of chromosomal segments conserved since divergence of man and mouse. JH Nadeau BA Taylor, Proc Natl Acad Sci USA 1984 81 3 814 8 10.1073/pnas.81.3.814 6583681
    • (1984) Proc Natl Acad Sci USA , vol.81 , Issue.3 , pp. 814-8
    • Nadeau, J.H.1    Taylor, B.A.2
  • 8
    • 23844460187 scopus 로고    scopus 로고
    • Chromosomal breakpoint reuse in genome sequence rearrangement
    • 10.1089/cmb.2005.12.812. 16108718
    • Chromosomal breakpoint reuse in genome sequence rearrangement. D Sankoff P Trinh, J Comput Biol 2005 12 6 812 21 10.1089/cmb.2005.12.812 16108718
    • (2005) J Comput Biol , vol.12 , Issue.6 , pp. 812-21
    • Sankoff, D.1    Trinh, P.2
  • 9
    • 8844285951 scopus 로고    scopus 로고
    • Is there a functional link between gene interdigitation and multi-species conservation of synteny blocks?
    • 10.1002/bies.20117. 15499588
    • Is there a functional link between gene interdigitation and multi-species conservation of synteny blocks? A Mackenzie KA Miller JM Collinson, Bioessays 2004 26 11 1217 24 10.1002/bies.20117 15499588
    • (2004) Bioessays , vol.26 , Issue.11 , pp. 1217-24
    • MacKenzie, A.1    Miller, K.A.2    Collinson, J.M.3
  • 10
    • 33646468497 scopus 로고    scopus 로고
    • Highly conserved syntenic blocks at the vertebrate Hox loci and conserved regulatory elements within and outside Hox gene clusters
    • 10.1073/pnas.0601492103. 16636282
    • Highly conserved syntenic blocks at the vertebrate Hox loci and conserved regulatory elements within and outside Hox gene clusters. AP Lee EGL Koh A Tay S Brenner B Venkatesh, Proc Natl Acad Sci USA 2006 103 18 6994 9 10.1073/pnas.0601492103 16636282
    • (2006) Proc Natl Acad Sci USA , vol.103 , Issue.18 , pp. 6994-9
    • Lee, A.P.1    Koh, E.G.L.2    Tay, A.3    Brenner, S.4    Venkatesh, B.5
  • 11
    • 21444434589 scopus 로고    scopus 로고
    • Highly conserved regulatory elements around the SHH gene may contribute to the maintenance of conserved synteny across human chromosome 7q36.3
    • 10.1016/j.ygeno.2005.04.006. 15939571
    • Highly conserved regulatory elements around the SHH gene may contribute to the maintenance of conserved synteny across human chromosome 7q36.3. DK Goode P Snell SF Smith JE Cooke G Elgar, Genomics 2005 86 2 172 81 10.1016/j.ygeno.2005.04.006 15939571
    • (2005) Genomics , vol.86 , Issue.2 , pp. 172-81
    • Goode, D.K.1    Snell, P.2    Smith, S.F.3    Cooke, J.E.4    Elgar, G.5
  • 13
    • 38849112675 scopus 로고    scopus 로고
    • Genomic regulatory blocks underlie extensive microsynteny conservation in insects
    • 10.1101/gr.6669607. 17989259
    • Genomic regulatory blocks underlie extensive microsynteny conservation in insects. PG Engström SJH Sui O Drivenes TS Becker B Lenhard, Genome Res 2007 17 12 1898 908 10.1101/gr.6669607 17989259
    • (2007) Genome Res , vol.17 , Issue.12 , pp. 1898-908
    • Engström, P.G.1    Sui, S.J.H.2    Drivenes, O.3    Becker, T.S.4    Lenhard, B.5
  • 17
    • 33744466839 scopus 로고    scopus 로고
    • Chromosome inversions, local adaptation and speciation
    • 10.1534/genetics.105.047985. 16204214
    • Chromosome inversions, local adaptation and speciation. M Kirkpatrick N Barton, Genetics 2006 173 419 34 10.1534/genetics.105.047985 16204214
    • (2006) Genetics , vol.173 , pp. 419-34
    • Kirkpatrick, M.1    Barton, N.2
  • 18
    • 12744261452 scopus 로고    scopus 로고
    • Evolution and functional classification of vertebrate gene deserts
    • 10.1101/gr.3015505. 15590943
    • Evolution and functional classification of vertebrate gene deserts. I Ovcharenko GG Loots MA Nobrega RC Hardison W Miller L Stubbs, Genome Res 2005 15 137 45 10.1101/gr.3015505 15590943
    • (2005) Genome Res , vol.15 , pp. 137-45
    • Ovcharenko, I.1    Loots, G.G.2    Nobrega, M.A.3    Hardison, R.C.4    Miller, W.5    Stubbs, L.6
  • 21
    • 27644489367 scopus 로고    scopus 로고
    • Immunoglobulin gene diversification
    • 10.1146/annurev.genet.39.073003.110544. 16285851
    • Immunoglobulin gene diversification. N Maizels, Annu Rev Genet 2005 39 23 46 10.1146/annurev.genet.39.073003.110544 16285851
    • (2005) Annu Rev Genet , vol.39 , pp. 23-46
    • Maizels, N.1
  • 23
    • 0037398319 scopus 로고    scopus 로고
    • Homotypic regulatory clusters in Drosophila
    • 10.1101/gr.668403. 12670999
    • Homotypic regulatory clusters in Drosophila. AP Lifanov VJ Makeev AG Nazina DA Papatsenko, Genome Res 2003 13 4 579 88 10.1101/gr.668403 12670999
    • (2003) Genome Res , vol.13 , Issue.4 , pp. 579-88
    • Lifanov, A.P.1    Makeev, V.J.2    Nazina, A.G.3    Papatsenko, D.A.4
  • 26
    • 38049162608 scopus 로고    scopus 로고
    • Chromosome fragile sites
    • 10.1146/annurev.genet.41.042007.165900. 17608616
    • Chromosome fragile sites. SG Durkin TW Glover, Annu Rev Genet 2007 41 169 92 10.1146/annurev.genet.41.042007.165900 17608616
    • (2007) Annu Rev Genet , vol.41 , pp. 169-92
    • Durkin, S.G.1    Glover, T.W.2
  • 27
    • 34249697132 scopus 로고    scopus 로고
    • Is mammalian chromosomal evolution driven by regions of genome fragility?
    • 10.1186/gb-2006-7-12-r115. 17156441
    • Is mammalian chromosomal evolution driven by regions of genome fragility? A Ruiz-Herrera J Castresana TJ Robinson, Genome Biol 2006 7 12 115 10.1186/gb-2006-7-12-r115 17156441
    • (2006) Genome Biol , vol.7 , Issue.12 , pp. 18115
    • Ruiz-Herrera, A.1    Castresana, J.2    Robinson, T.J.3
  • 28
    • 30344444783 scopus 로고    scopus 로고
    • The molecular basis of common and rare fragile sites
    • 10.1016/j.canlet.2005.07.039. 16236432
    • The molecular basis of common and rare fragile sites. M Schwartz E Zlotorynski B Kerem, Cancer Lett 2006 232 13 26 10.1016/j.canlet.2005.07.039 16236432
    • (2006) Cancer Lett , vol.232 , pp. 13-26
    • Schwartz, M.1    Zlotorynski, E.2    Kerem, B.3
  • 29
    • 0042810698 scopus 로고    scopus 로고
    • A long-range Shh enhancer regulates expression in the developing limb and fin and is associated with preaxial polydactyly
    • 10.1093/hmg/ddg180. 12837695
    • A long-range Shh enhancer regulates expression in the developing limb and fin and is associated with preaxial polydactyly. LA Lettice SJH Heaney LA Purdie L Li P de Beer BA Oostra D Goode G Elgar RE Hill E de Graaff, Hum Mol Genet 2003 12 14 1725 35 10.1093/hmg/ddg180 12837695
    • (2003) Hum Mol Genet , vol.12 , Issue.14 , pp. 1725-35
    • Lettice, L.A.1    Heaney, S.J.H.2    Purdie, L.A.3    Li, L.4    De Beer, P.5    Oostra, B.A.6    Goode, D.7    Elgar, G.8    Hill, R.E.9    De Graaff, E.10
  • 30
    • 29444452159 scopus 로고    scopus 로고
    • Defining a genomic radius for long-range enhancer action: Duplicated conserved non-coding elements hold the key
    • 10.1016/j.tig.2005.10.005. 16290136
    • Defining a genomic radius for long-range enhancer action: duplicated conserved non-coding elements hold the key. T Vavouri GK McEwen A Woolfe WR Gilks G Elgar, Trends Genet 2006 22 5 10 10.1016/j.tig.2005.10.005 16290136
    • (2006) Trends Genet , vol.22 , pp. 5-10
    • Vavouri, T.1    McEwen, G.K.2    Woolfe, A.3    Gilks, W.R.4    Elgar, G.5
  • 31
    • 35248882434 scopus 로고    scopus 로고
    • The random versus fragile breakage models of chromosome evolution: A matter of resolution
    • 10.1007/s00438-007-0287-0. 17851692
    • The random versus fragile breakage models of chromosome evolution: a matter of resolution. TS Becker B Lenhard, Mol Genet Genomics 2007 278 5 487 91 10.1007/s00438-007-0287-0 17851692
    • (2007) Mol Genet Genomics , vol.278 , Issue.5 , pp. 487-91
    • Becker, T.S.1    Lenhard, B.2
  • 32
    • 33847057226 scopus 로고    scopus 로고
    • The evolutionary significance of cis-regulatory mutations
    • 10.1038/nrg2063. 17304246
    • The evolutionary significance of cis-regulatory mutations. GA Wray, Nat Rev Genet 2007 8 3 206 16 10.1038/nrg2063 17304246
    • (2007) Nat Rev Genet , vol.8 , Issue.3 , pp. 206-16
    • Wray, G.A.1


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