-
1
-
-
27744585974
-
Chromosome evolution in eukaryotes: A multi-kingdom perspective
-
10.1016/j.tig.2005.09.009. 16242204
-
Chromosome evolution in eukaryotes: a multi-kingdom perspective. A Coghlan EE Eichler SG Oliver AH Paterson L Stein, Trends Genet 2005 21 12 673 82 10.1016/j.tig.2005.09.009 16242204
-
(2005)
Trends Genet
, vol.21
, Issue.12
, pp. 673-82
-
-
Coghlan, A.1
Eichler, E.E.2
Oliver, S.G.3
Paterson, A.H.4
Stein, L.5
-
2
-
-
0038271921
-
Human and mouse genomic sequences reveal extensive breakpoint reuse in mammalian evolution
-
10.1073/pnas.1330369100. 12810957
-
Human and mouse genomic sequences reveal extensive breakpoint reuse in mammalian evolution. P Pevzner G Tesler, Proc Natl Acad Sci USA 2003 100 13 7672 7 10.1073/pnas.1330369100 12810957
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, Issue.13
, pp. 7672-7
-
-
Pevzner, P.1
Tesler, G.2
-
3
-
-
33645766047
-
The fragile breakage versus random breakage models of chromosome evolution
-
10.1371/journal.pcbi.0020014. 16501665
-
The fragile breakage versus random breakage models of chromosome evolution. Q Peng PA Pevzner G Tesler, PLoS Comput Biol 2006 2 2 14 10.1371/journal.pcbi.0020014 16501665
-
(2006)
PLoS Comput Biol
, vol.2
, Issue.2
, pp. 514
-
-
Peng, Q.1
Pevzner, P.A.2
Tesler, G.3
-
4
-
-
0141817723
-
Chromosome rearrangements in evolution: From gene order to genome sequence and back
-
10.1073/pnas.2035002100. 14506293
-
Chromosome rearrangements in evolution: From gene order to genome sequence and back. D Sankoff JH Nadeau, Proc Natl Acad Sci USA 2003 100 20 11188 9 10.1073/pnas.2035002100 14506293
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, Issue.20
, pp. 11188-9
-
-
Sankoff, D.1
Nadeau, J.H.2
-
5
-
-
0032770572
-
Gene order breakpoint evidence in animal mitochondrial phylogeny
-
10.1007/PL00006542. 10441671
-
Gene order breakpoint evidence in animal mitochondrial phylogeny. M Blanchette T Kunisawa D Sankoff, J Mol Evol 1999 49 2 193 203 10.1007/PL00006542 10441671
-
(1999)
J Mol Evol
, vol.49
, Issue.2
, pp. 193-203
-
-
Blanchette, M.1
Kunisawa, T.2
Sankoff, D.3
-
6
-
-
44449091611
-
Gene rearrangement analysis and ancestral order inference from chloroplast genomes with inverted repeat
-
10.1186/1471-2164-9-S1-S25. 18366615
-
Gene rearrangement analysis and ancestral order inference from chloroplast genomes with inverted repeat. F Yue L Cui CW dePamphilis BME Moret J Tang, BMC Genomics 2008 9 Suppl 1 25 10.1186/1471-2164-9-S1-S25 18366615
-
(2008)
BMC Genomics
, vol.9
, Issue.SUPPL. 1
, pp. 1925
-
-
Yue, F.1
Cui, L.2
Depamphilis, C.W.3
Moret, B.M.E.4
Tang, J.5
-
7
-
-
0000791476
-
Lengths of chromosomal segments conserved since divergence of man and mouse
-
10.1073/pnas.81.3.814. 6583681
-
Lengths of chromosomal segments conserved since divergence of man and mouse. JH Nadeau BA Taylor, Proc Natl Acad Sci USA 1984 81 3 814 8 10.1073/pnas.81.3.814 6583681
-
(1984)
Proc Natl Acad Sci USA
, vol.81
, Issue.3
, pp. 814-8
-
-
Nadeau, J.H.1
Taylor, B.A.2
-
8
-
-
23844460187
-
Chromosomal breakpoint reuse in genome sequence rearrangement
-
10.1089/cmb.2005.12.812. 16108718
-
Chromosomal breakpoint reuse in genome sequence rearrangement. D Sankoff P Trinh, J Comput Biol 2005 12 6 812 21 10.1089/cmb.2005.12.812 16108718
-
(2005)
J Comput Biol
, vol.12
, Issue.6
, pp. 812-21
-
-
Sankoff, D.1
Trinh, P.2
-
9
-
-
8844285951
-
Is there a functional link between gene interdigitation and multi-species conservation of synteny blocks?
-
10.1002/bies.20117. 15499588
-
Is there a functional link between gene interdigitation and multi-species conservation of synteny blocks? A Mackenzie KA Miller JM Collinson, Bioessays 2004 26 11 1217 24 10.1002/bies.20117 15499588
-
(2004)
Bioessays
, vol.26
, Issue.11
, pp. 1217-24
-
-
MacKenzie, A.1
Miller, K.A.2
Collinson, J.M.3
-
10
-
-
33646468497
-
Highly conserved syntenic blocks at the vertebrate Hox loci and conserved regulatory elements within and outside Hox gene clusters
-
10.1073/pnas.0601492103. 16636282
-
Highly conserved syntenic blocks at the vertebrate Hox loci and conserved regulatory elements within and outside Hox gene clusters. AP Lee EGL Koh A Tay S Brenner B Venkatesh, Proc Natl Acad Sci USA 2006 103 18 6994 9 10.1073/pnas.0601492103 16636282
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, Issue.18
, pp. 6994-9
-
-
Lee, A.P.1
Koh, E.G.L.2
Tay, A.3
Brenner, S.4
Venkatesh, B.5
-
11
-
-
21444434589
-
Highly conserved regulatory elements around the SHH gene may contribute to the maintenance of conserved synteny across human chromosome 7q36.3
-
10.1016/j.ygeno.2005.04.006. 15939571
-
Highly conserved regulatory elements around the SHH gene may contribute to the maintenance of conserved synteny across human chromosome 7q36.3. DK Goode P Snell SF Smith JE Cooke G Elgar, Genomics 2005 86 2 172 81 10.1016/j.ygeno.2005.04.006 15939571
-
(2005)
Genomics
, vol.86
, Issue.2
, pp. 172-81
-
-
Goode, D.K.1
Snell, P.2
Smith, S.F.3
Cooke, J.E.4
Elgar, G.5
-
12
-
-
34248153777
-
Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates
-
10.1101/gr.6086307. 17387144
-
Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates. H Kikuta M Laplante P Navratilova AZ Komisarczuk PG Engström D Fredman A Akalin M Caccamo I Sealy K Howe J Ghislain G Pezeron P Mourrain S Ellingsen AC Oates C Thisse B Thisse I Foucher B Adolf A Geling B Lenhard TS Becker, Genome Res 2007 17 5 545 55 10.1101/gr.6086307 17387144
-
(2007)
Genome Res
, vol.17
, Issue.5
, pp. 545-55
-
-
Kikuta, H.1
Laplante, M.2
Navratilova, P.3
Komisarczuk, A.Z.4
Engström, P.G.5
Fredman, D.6
Akalin, A.7
Caccamo, M.8
Sealy, I.9
Howe, K.10
Ghislain, J.11
Pezeron, G.12
Mourrain, P.13
Ellingsen, S.14
Oates, A.C.15
Thisse, C.16
Thisse, B.17
Foucher, I.18
Adolf, B.19
Geling, A.20
Lenhard, B.21
Becker, T.S.22
more..
-
13
-
-
38849112675
-
Genomic regulatory blocks underlie extensive microsynteny conservation in insects
-
10.1101/gr.6669607. 17989259
-
Genomic regulatory blocks underlie extensive microsynteny conservation in insects. PG Engström SJH Sui O Drivenes TS Becker B Lenhard, Genome Res 2007 17 12 1898 908 10.1101/gr.6669607 17989259
-
(2007)
Genome Res
, vol.17
, Issue.12
, pp. 1898-908
-
-
Engström, P.G.1
Sui, S.J.H.2
Drivenes, O.3
Becker, T.S.4
Lenhard, B.5
-
14
-
-
34248576291
-
Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences
-
10.1038/nature05805. 17495919
-
Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences. TS Mikkelsen MJ Wakefield B Aken CT Amemiya JL Chang S Duke M Garber AJ Gentles L Goodstadt A Heger J Jurka M Kamal E Mauceli SMJ Searle T Sharpe ML Baker MA Batzer PV Benos K Belov M Clamp A Cook J Cuff R Das L Davidow JE Deakin MJ Fazzari JL Glass M Grabherr JM Greally W Gu TA Hore GA Huttley M Kleber RL Jirtle E Koina JT Lee S Mahony MA Marra RD Miller RD Nicholls M Oda AT Papenfuss ZE Parra DD Pollock DA Ray JE Schein TP Speed K Thompson JL VandeBerg CM Wade JA Walker PD Waters C Webber JR Weidman X Xie MC Zody BIGS Platform BIWGA Team JAM Graves CP Ponting M Breen PB Samollow ES Lander K Lindblad-Toh, Nature 2007 447 7141 167 77 10.1038/nature05805 17495919
-
(2007)
Nature
, vol.447
, Issue.7141
, pp. 167-77
-
-
Mikkelsen, T.S.1
Wakefield, M.J.2
Aken, B.3
Amemiya, C.T.4
Chang, J.L.5
Duke, S.6
Garber, M.7
Gentles, A.J.8
Goodstadt, L.9
Heger, A.10
Jurka, J.11
Kamal, M.12
Mauceli, E.13
Searle, S.M.J.14
Sharpe, T.15
Baker, M.L.16
Batzer, M.A.17
Benos, P.V.18
Belov, K.19
Clamp, M.20
Cook, A.21
Cuff, J.22
Das, R.23
Davidow, L.24
Deakin, J.E.25
Fazzari, M.J.26
Glass, J.L.27
Grabherr, M.28
Greally, J.M.29
Gu, W.30
Hore, T.A.31
Huttley, G.A.32
Kleber, M.33
Jirtle, R.L.34
Koina, E.35
Lee, J.T.36
Mahony, S.37
Marra, M.A.38
Miller, R.D.39
Nicholls, R.D.40
Oda, M.41
Papenfuss, A.T.42
Parra, Z.E.43
Pollock, D.D.44
Ray, D.A.45
Schein, J.E.46
Speed, T.P.47
Thompson, K.48
Vandeberg, J.L.49
Wade, C.M.50
Walker, J.A.51
Waters, P.D.52
Webber, C.53
Weidman, J.R.54
Xie, X.55
Zody, M.C.56
Bigs, P.57
Biwga, T.58
Graves, J.A.M.59
Ponting, C.P.60
Breen, M.61
Samollow, P.B.62
Lander, E.S.63
Lindblad-Toh, K.64
more..
-
15
-
-
10644283823
-
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
-
[1476-4687 Journal Article]. 10.1038/nature03154. 15592404
-
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. L Hillier W Miller E Birney W Warren R Hardison C Ponting P Bork D Burt M Groenen M Delany J Dodgson A Chinwalla P Cliften S Clifton K Delehaunty C Fronick R Fulton T Graves C Kremitzki D Layman V Magrini J McPherson T Miner P Minx W Nash M Nhan J Nelson L Oddy C Pohl J Randall-Maher S Smith J Wallis S Yang M Romanov C Rondelli B Paton J Smith D Morrice L Daniels H Tempest L Robertson J Masabanda D Griffin A Vignal V Fillon L Jacobbson S Kerje L Andersson R Crooijmans J Aerts J van der Poel H Ellegren R Caldwell S Hubbard D Grafham A Kierzek S McLaren I Overton H Arakawa K Beattie Y Bezzubov P Boardman J Bonfield M Croning R Davies M Francis S Humphray C Scott R Taylor C Tickle W Brown J Rogers J Buerstedde S Wilson L Stubbs I Ovcharenko L Gordon S Lucas M Miller H Inoko T Shiina J Kaufman J Salomonsen K Skjoedt G Wong J Wang B Liu J Wang J Yu H Yang M Nefedov M Koriabine P Dejong L Goodstadt C Webber N Dickens I Letunic M Suyama D Torrents C von Mering E Zdobnov K Makova A Nekrutenko L Elnitski P Eswara D King S Yang S Tyekucheva A Radakrishnan R Harris F Chiaromonte J Taylor J He M Rijnkels S Griffiths-Jones A Ureta-Vidal M Hoffman J Severin S Searle A Law D Speed D Waddington Z Cheng E Tuzun E Eichler Z Bao P Flicek D Shteynberg M Brent J Bye E Huckle S Chatterji C Dewey L Pachter A Kouranov Z Mourelatos A Hatzigeorgiou A Paterson R Ivarie M Brandstrom E Axelsson N Backstrom S Berlin M Webster O Pourquie A Reymond C Ucla S Antonarakis M Long J Emerson E Betran I Dupanloup H Kaessmann A Hinrichs G Bejerano T Furey R Harte B Raney A Siepel W Kent D Haussler E Eyras R Castelo J Abril S Castellano F Camara G Parra R Guigo G Bourque G Tesler P Pevzner A Smit L Fulton E Mardis R Wilson, Nature 2004 432 7018 695 716 [1476-4687 Journal Article] 10.1038/nature03154 15592404
-
(2004)
Nature
, vol.432
, Issue.7018
, pp. 695-716
-
-
Hillier, L.1
Miller, W.2
Birney, E.3
Warren, W.4
Hardison, R.5
Ponting, C.6
Bork, P.7
Burt, D.8
Groenen, M.9
Delany, M.10
Dodgson, J.11
Chinwalla, A.12
Cliften, P.13
Clifton, S.14
Delehaunty, K.15
Fronick, C.16
Fulton, R.17
Graves, T.18
Kremitzki, C.19
Layman, D.20
Magrini, V.21
McPherson, J.22
Miner, T.23
Minx, P.24
Nash, W.25
Nhan, M.26
Nelson, J.27
Oddy, L.28
Pohl, C.29
Randall-Maher, J.30
Smith, S.31
Wallis, J.32
Yang, S.33
Romanov, M.34
Rondelli, C.35
Paton, B.36
Smith, J.37
Morrice, D.38
Daniels, L.39
Tempest, H.40
Robertson, L.41
Masabanda, J.42
Griffin, D.43
Vignal, A.44
Fillon, V.45
Jacobbson, L.46
Kerje, S.47
Andersson, L.48
Crooijmans, R.49
Aerts, J.50
Der Van, P.J.51
Ellegren, H.52
Caldwell, R.53
Hubbard, S.54
Grafham, D.55
Kierzek, A.56
McLaren, S.57
Overton, I.58
Arakawa, H.59
Beattie, K.60
Bezzubov, Y.61
Boardman, P.62
Bonfield, J.63
Croning, M.64
Davies, R.65
Francis, M.66
Humphray, S.67
Scott, C.68
Taylor, R.69
Tickle, C.70
Brown, W.71
Rogers, J.72
Buerstedde, J.73
Wilson, S.74
Stubbs, L.75
Ovcharenko, I.76
Gordon, L.77
Lucas, S.78
Miller, M.79
Inoko, H.80
Shiina, T.81
Kaufman, J.82
Salomonsen, J.83
Skjoedt, K.84
Wong, G.85
Wang, J.86
Liu, B.87
Wang, J.88
Yu, J.89
Yang, H.90
Nefedov, M.91
Koriabine, M.92
Dejong, P.93
Goodstadt, L.94
Webber, C.95
Dickens, N.96
Letunic, I.97
Suyama, M.98
Torrents, D.99
more..
-
16
-
-
0036079158
-
The human genome browser at UCSC
-
12045153
-
The human genome browser at UCSC. WJ Kent CW Sugnet TS Furey KM Roskin TH Pringle AM Zahler D Haussler, Genome Res 2002 12 6 996 1006 12045153
-
(2002)
Genome Res
, vol.12
, Issue.6
, pp. 996-1006
-
-
Kent, W.J.1
Sugnet, C.W.2
Furey, T.S.3
Roskin, K.M.4
Pringle, T.H.5
Zahler, A.M.6
Haussler, D.7
-
17
-
-
33744466839
-
Chromosome inversions, local adaptation and speciation
-
10.1534/genetics.105.047985. 16204214
-
Chromosome inversions, local adaptation and speciation. M Kirkpatrick N Barton, Genetics 2006 173 419 34 10.1534/genetics.105.047985 16204214
-
(2006)
Genetics
, vol.173
, pp. 419-34
-
-
Kirkpatrick, M.1
Barton, N.2
-
19
-
-
22744440499
-
Dynamics of mammalian chromosome evolution inferred from multispecies comparative maps
-
10.1126/science.1111387. 16040707
-
Dynamics of mammalian chromosome evolution inferred from multispecies comparative maps. WJ Murphy DM Larkin AE van der Wind G Bourque G Tesler L Auvil JE Beever BP Chowdhary F Galibert L Gatzke C Hitte SN Meyers D Milan EA Ostrander G Pape HG Parker T Raudsepp MB Rogatcheva LB Schook LC Skow M Welge JE Womack SJ O'brien PA Pevzner HA Lewin, Science 2005 309 5734 613 7 10.1126/science.1111387 16040707
-
(2005)
Science
, vol.309
, Issue.5734
, pp. 613-7
-
-
Murphy, W.J.1
Larkin, D.M.2
Der Van, E.W.A.3
Bourque, G.4
Tesler, G.5
Auvil, L.6
Beever, J.E.7
Chowdhary, B.P.8
Galibert, F.9
Gatzke, L.10
Hitte, C.11
Meyers, S.N.12
Milan, D.13
Ostrander, E.A.14
Pape, G.15
Parker, H.G.16
Raudsepp, T.17
Rogatcheva, M.B.18
Schook, L.B.19
Skow, L.C.20
Welge, M.21
Womack, J.E.22
O'Brien, S.J.23
Pevzner, P.A.24
Lewin, H.A.25
more..
-
20
-
-
48449104742
-
Babelomics: Advanced functional profiling of transcriptomics, proteomics and genomics experiments
-
10.1093/nar/gkn318. 18515841
-
Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments. F Al-Shahrour J Carbonell P Minguez S Goetz A Conesa J T'arraga I Medina E Alloza D Montaner J Dopazo, Nucleic Acids Res 2008 36 Web Server 341 6 10.1093/nar/gkn318 18515841
-
(2008)
Nucleic Acids Res
, Issue.36 WEB SERVER
, pp. 23341-6
-
-
Al-Shahrour, F.1
Carbonell, J.2
Minguez, P.3
Goetz, S.4
Conesa, A.5
T'Arraga, J.6
Medina, I.7
Alloza, E.8
Montaner, D.9
Dopazo, J.10
-
21
-
-
27644489367
-
Immunoglobulin gene diversification
-
10.1146/annurev.genet.39.073003.110544. 16285851
-
Immunoglobulin gene diversification. N Maizels, Annu Rev Genet 2005 39 23 46 10.1146/annurev.genet.39.073003.110544 16285851
-
(2005)
Annu Rev Genet
, vol.39
, pp. 23-46
-
-
Maizels, N.1
-
22
-
-
11144358198
-
A gene atlas of the mouse and human protein-encoding transcriptomes
-
[0027-8424 (Print) Journal Article]. 10.1073/pnas.0400782101. 15075390
-
A gene atlas of the mouse and human protein-encoding transcriptomes. A Su T Wiltshire S Batalov H Lapp K Ching D Block J Zhang R Soden M Hayakawa G Kreiman M Cooke J Walker J Hogenesch, Proc Natl Acad Sci USA 2004 101 16 6062 7 [0027-8424 (Print) Journal Article] 10.1073/pnas.0400782101 15075390
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, Issue.16
, pp. 6062-7
-
-
Su, A.1
Wiltshire, T.2
Batalov, S.3
Lapp, H.4
Ching, K.5
Block, D.6
Zhang, J.7
Soden, R.8
Hayakawa, M.9
Kreiman, G.10
Cooke, M.11
Walker, J.12
Hogenesch, J.13
-
23
-
-
0037398319
-
Homotypic regulatory clusters in Drosophila
-
10.1101/gr.668403. 12670999
-
Homotypic regulatory clusters in Drosophila. AP Lifanov VJ Makeev AG Nazina DA Papatsenko, Genome Res 2003 13 4 579 88 10.1101/gr.668403 12670999
-
(2003)
Genome Res
, vol.13
, Issue.4
, pp. 579-88
-
-
Lifanov, A.P.1
Makeev, V.J.2
Nazina, A.G.3
Papatsenko, D.A.4
-
24
-
-
0035895505
-
The sequence of the human genome
-
10.1126/science.1058040. 11181995
-
The sequence of the human genome. JC Venter MD Adams EW Myers PW Li RJ Mural GG Sutton HO Smith M Yandell CA Evans RA Holt JD Gocayne P Amanatides RM Ballew DH Huson JR Wortman Q Zhang CD Kodira XH Zheng L Chen M Skupski G Subramanian PD Thomas J Zhang GLG Miklos C Nelson S Broder AG Clark J Nadeau VA McKusick N Zinder AJ Levine RJ Roberts M Simon C Slayman M Hunkapiller R Bolanos A Delcher I Dew D Fasulo M Flanigan L Florea A Halpern S Hannenhalli S Kravitz S Levy C Mobarry K Reinert K Remington J Abu-Threideh E Beasley K Biddick V Bonazzi R Brandon M Cargill I Chandramouliswaran R Charlab K Chaturvedi Z Deng VD Francesco P Dunn K Eilbeck C Evangelista AE Gabrielian W Gan W Ge F Gong Z Gu P Guan TJ Heiman ME Higgins RR Ji Z Ke KA Ketchum Z Lai Y Lei Z Li J Li Y Liang X Lin F Lu GV Merkulov N Milshina HM Moore AK Naik VA Narayan B Neelam D Nusskern DB Rusch S Salzberg W Shao B Shue J Sun Z Wang A Wang X Wang J Wang M Wei R Wides C Xiao C Yan A Yao J Ye M Zhan W Zhang H Zhang Q Zhao L Zheng F Zhong W Zhong S Zhu S Zhao D Gilbert S Baumhueter G Spier C Carter A Cravchik T Woodage F Ali H An A Awe D Baldwin H Baden M Barnstead I Barrow K Beeson D Busam A Carver A Center ML Cheng L Curry S Danaher L Davenport R Desilets S Dietz K Dodson L Doup S Ferriera N Garg A Gluecksmann B Hart J Haynes C Haynes C Heiner S Hladun D Hostin J Houck T Howland C Ibegwam J Johnson F Kalush L Kline S Koduru A Love F Mann D May S McCawley T McIntosh I McMullen M Moy L Moy B Murphy K Nelson C Pfannkoch E Pratts V Puri H Qureshi M Reardon R Rodriguez YH Rogers D Romblad B Ruhfel R Scott C Sitter M Smallwood E Stewart R Strong E Suh R Thomas NN Tint S Tse C Vech G Wang J Wetter S Williams M Williams S Windsor E Winn-Deen K Wolfe J Zaveri K Zaveri JF Abril R Guig'o MJ Campbell KV Sjolander B Karlak A Kejariwal H Mi B Lazareva T Hatton A Narechania K Diemer A Muruganujan N Guo S Sato V Bafna S Istrail R Lippert R Schwartz B Walenz S Yooseph D Allen A Basu J Baxendale L Blick M Caminha J Carnes-Stine P Caulk YH Chiang M Coyne C Dahlke A Mays M Dombroski M Donnelly D Ely S Esparham C Fosler H Gire S Glanowski K Glasser A Glodek M Gorokhov K Graham B Gropman M Harris J Heil S Henderson J Hoover D Jennings C Jordan J Jordan J Kasha L Kagan C Kraft A Levitsky M Lewis X Liu J Lopez D Ma W Majoros J McDaniel S Murphy M Newman T Nguyen N Nguyen M Nodell S Pan J Peck M Peterson W Rowe R Sanders J Scott M Simpson T Smith A Sprague T Stockwell R Turner E Venter M Wang M Wen D Wu M Wu A Xia A Zandieh X Zhu, Science 2001 291 5507 1304 51 10.1126/science.1058040 11181995
-
(2001)
Science
, vol.291
, Issue.5507
, pp. 1304-51
-
-
Venter, J.C.1
Adams, M.D.2
Myers, E.W.3
Li, P.W.4
Mural, R.J.5
Sutton, G.G.6
Smith, H.O.7
Yandell, M.8
Evans, C.A.9
Holt, R.A.10
Gocayne, J.D.11
Amanatides, P.12
Ballew, R.M.13
Huson, D.H.14
Wortman, J.R.15
Zhang, Q.16
Kodira, C.D.17
Zheng, X.H.18
Chen, L.19
Skupski, M.20
Subramanian, G.21
Thomas, P.D.22
Zhang, J.23
Miklos, G.L.G.24
Nelson, C.25
Broder, S.26
Clark, A.G.27
Nadeau, J.28
McKusick, V.A.29
Zinder, N.30
Levine, A.J.31
Roberts, R.J.32
Simon, M.33
Slayman, C.34
Hunkapiller, M.35
Bolanos, R.36
Delcher, A.37
Dew, I.38
Fasulo, D.39
Flanigan, M.40
Florea, L.41
Halpern, A.42
Hannenhalli, S.43
Kravitz, S.44
Levy, S.45
Mobarry, C.46
Reinert, K.47
Remington, K.48
Abu-Threideh, J.49
Beasley, E.50
Biddick, K.51
Bonazzi, V.52
Brandon, R.53
Cargill, M.54
Chandramouliswaran, I.55
Charlab, R.56
Chaturvedi, K.57
Deng, Z.58
Francesco, V.D.59
Dunn, P.60
Eilbeck, K.61
Evangelista, C.62
Gabrielian, A.E.63
Gan, W.64
Ge, W.65
Gong, F.66
Gu, Z.67
Guan, P.68
Heiman, T.J.69
Higgins, M.E.70
Ji, R.R.71
Ke, Z.72
Ketchum, K.A.73
Lai, Z.74
Lei, Y.75
Li, Z.76
Li, J.77
Liang, Y.78
Lin, X.79
Lu, F.80
Merkulov, G.V.81
Milshina, N.82
Moore, H.M.83
Naik, A.K.84
Narayan, V.A.85
Neelam, B.86
Nusskern, D.87
Rusch, D.B.88
Salzberg, S.89
Shao, W.90
Shue, B.91
Sun, J.92
Wang, Z.93
Wang, A.94
Wang, X.95
Wang, J.96
Wei, M.97
Wides, R.98
Xiao, C.99
more..
-
25
-
-
4444291843
-
Detection of large-scale variation in the human genome
-
10.1038/ng1416. 15286789
-
Detection of large-scale variation in the human genome. AJ Iafrate L Feuk MN Rivera ML Listewnik PK Donahoe Y Qi SW Scherer C Lee, Nat Genet 2004 36 9 949 51 10.1038/ng1416 15286789
-
(2004)
Nat Genet
, vol.36
, Issue.9
, pp. 949-51
-
-
Iafrate, A.J.1
Feuk, L.2
Rivera, M.N.3
Listewnik, M.L.4
Donahoe, P.K.5
Qi, Y.6
Scherer, S.W.7
Lee, C.8
-
26
-
-
38049162608
-
Chromosome fragile sites
-
10.1146/annurev.genet.41.042007.165900. 17608616
-
Chromosome fragile sites. SG Durkin TW Glover, Annu Rev Genet 2007 41 169 92 10.1146/annurev.genet.41.042007.165900 17608616
-
(2007)
Annu Rev Genet
, vol.41
, pp. 169-92
-
-
Durkin, S.G.1
Glover, T.W.2
-
27
-
-
34249697132
-
Is mammalian chromosomal evolution driven by regions of genome fragility?
-
10.1186/gb-2006-7-12-r115. 17156441
-
Is mammalian chromosomal evolution driven by regions of genome fragility? A Ruiz-Herrera J Castresana TJ Robinson, Genome Biol 2006 7 12 115 10.1186/gb-2006-7-12-r115 17156441
-
(2006)
Genome Biol
, vol.7
, Issue.12
, pp. 18115
-
-
Ruiz-Herrera, A.1
Castresana, J.2
Robinson, T.J.3
-
28
-
-
30344444783
-
The molecular basis of common and rare fragile sites
-
10.1016/j.canlet.2005.07.039. 16236432
-
The molecular basis of common and rare fragile sites. M Schwartz E Zlotorynski B Kerem, Cancer Lett 2006 232 13 26 10.1016/j.canlet.2005.07.039 16236432
-
(2006)
Cancer Lett
, vol.232
, pp. 13-26
-
-
Schwartz, M.1
Zlotorynski, E.2
Kerem, B.3
-
29
-
-
0042810698
-
A long-range Shh enhancer regulates expression in the developing limb and fin and is associated with preaxial polydactyly
-
10.1093/hmg/ddg180. 12837695
-
A long-range Shh enhancer regulates expression in the developing limb and fin and is associated with preaxial polydactyly. LA Lettice SJH Heaney LA Purdie L Li P de Beer BA Oostra D Goode G Elgar RE Hill E de Graaff, Hum Mol Genet 2003 12 14 1725 35 10.1093/hmg/ddg180 12837695
-
(2003)
Hum Mol Genet
, vol.12
, Issue.14
, pp. 1725-35
-
-
Lettice, L.A.1
Heaney, S.J.H.2
Purdie, L.A.3
Li, L.4
De Beer, P.5
Oostra, B.A.6
Goode, D.7
Elgar, G.8
Hill, R.E.9
De Graaff, E.10
-
30
-
-
29444452159
-
Defining a genomic radius for long-range enhancer action: Duplicated conserved non-coding elements hold the key
-
10.1016/j.tig.2005.10.005. 16290136
-
Defining a genomic radius for long-range enhancer action: duplicated conserved non-coding elements hold the key. T Vavouri GK McEwen A Woolfe WR Gilks G Elgar, Trends Genet 2006 22 5 10 10.1016/j.tig.2005.10.005 16290136
-
(2006)
Trends Genet
, vol.22
, pp. 5-10
-
-
Vavouri, T.1
McEwen, G.K.2
Woolfe, A.3
Gilks, W.R.4
Elgar, G.5
-
31
-
-
35248882434
-
The random versus fragile breakage models of chromosome evolution: A matter of resolution
-
10.1007/s00438-007-0287-0. 17851692
-
The random versus fragile breakage models of chromosome evolution: a matter of resolution. TS Becker B Lenhard, Mol Genet Genomics 2007 278 5 487 91 10.1007/s00438-007-0287-0 17851692
-
(2007)
Mol Genet Genomics
, vol.278
, Issue.5
, pp. 487-91
-
-
Becker, T.S.1
Lenhard, B.2
-
32
-
-
33847057226
-
The evolutionary significance of cis-regulatory mutations
-
10.1038/nrg2063. 17304246
-
The evolutionary significance of cis-regulatory mutations. GA Wray, Nat Rev Genet 2007 8 3 206 16 10.1038/nrg2063 17304246
-
(2007)
Nat Rev Genet
, vol.8
, Issue.3
, pp. 206-16
-
-
Wray, G.A.1
-
33
-
-
38849149795
-
28-way vertebrate alignment and conservation track in the UCSC Genome Browser
-
10.1101/gr.6761107. 17984227
-
28-way vertebrate alignment and conservation track in the UCSC Genome Browser. W Miller K Rosenbloom RC Hardison M Hou J Taylor B Raney R Burhans DC King R Baertsch D Blankenberg SLK Pond A Nekrutenko B Giardine RS Harris S Tyekucheva M Diekhans TH Pringle WJ Murphy A Lesk GM Weinstock K Lindblad-Toh RA Gibbs ES Lander A Siepel D Haussler WJ Kent, Genome Res 2007 17 12 1797 808 10.1101/gr.6761107 17984227
-
(2007)
Genome Res
, vol.17
, Issue.12
, pp. 1797-808
-
-
Miller, W.1
Rosenbloom, K.2
Hardison, R.C.3
Hou, M.4
Taylor, J.5
Raney, B.6
Burhans, R.7
King, D.C.8
Baertsch, R.9
Blankenberg, D.10
Pond, S.L.K.11
Nekrutenko, A.12
Giardine, B.13
Harris, R.S.14
Tyekucheva, S.15
Diekhans, M.16
Pringle, T.H.17
Murphy, W.J.18
Lesk, A.19
Weinstock, G.M.20
Lindblad-Toh, K.21
Gibbs, R.A.22
Lander, E.S.23
Siepel, A.24
Haussler, D.25
Kent, W.J.26
more..
-
34
-
-
23744458086
-
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
-
[1088-9051 (Print) Journal Article]. 10.1101/gr.3715005. 16024819
-
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. A Siepel G Bejerano J Pedersen A Hinrichs M Hou K Rosenbloom H Clawson J Spieth L Hillier S Richards G Weinstock R Wilson R Gibbs W Kent W Miller D Haussler, Genome Res 2005 15 8 1034 50 [1088-9051 (Print) Journal Article] 10.1101/gr.3715005 16024819
-
(2005)
Genome Res
, vol.15
, Issue.8
, pp. 1034-50
-
-
Siepel, A.1
Bejerano, G.2
Pedersen, J.3
Hinrichs, A.4
Hou, M.5
Rosenbloom, K.6
Clawson, H.7
Spieth, J.8
Hillier, L.9
Richards, S.10
Weinstock, G.11
Wilson, R.12
Gibbs, R.13
Kent, W.14
Miller, W.15
Haussler, D.16
-
35
-
-
33846039019
-
Ensembl 2007
-
10.1093/nar/gkl996. 17148474
-
Ensembl 2007. TJP Hubbard BL Aken K Beal B Ballester M Caccamo Y Chen L Clarke G Coates F Cunningham T Cutts T Down SC Dyer S Fitzgerald J Fernandez-Banet S Graf S Haider M Hammond J Herrero R Holland K Howe N Johnson A Kahari D Keefe F Kokocinski E Kulesha D Lawson I Longden C Melsopp K Megy P Meidl B Ouverdin A Parker A Prlic S Rice D Rios M Schuster I Sealy J Severin G Slater D Smedley G Spudich S Trevanion A Vilella J Vogel S White M Wood T Cox V Curwen R Durbin XM Fernandez-Suarez P Flicek A Kasprzyk G Proctor S Searle J Smith A Ureta-Vidal E Birney, Nucleic Acids Res 2007 35 Database 610 7 10.1093/nar/gkl996 17148474
-
(2007)
Nucleic Acids Res
, Issue.35 DATABASE
, pp. 4610-7
-
-
Hubbard, T.J.P.1
Aken, B.L.2
Beal, K.3
Ballester, B.4
Caccamo, M.5
Chen, Y.6
Clarke, L.7
Coates, G.8
Cunningham, F.9
Cutts, T.10
Down, T.11
Dyer, S.C.12
Fitzgerald, S.13
Fernandez-Banet, J.14
Graf, S.15
Haider, S.16
Hammond, M.17
Herrero, J.18
Holland, R.19
Howe, K.20
Johnson, N.21
Kahari, A.22
Keefe, D.23
Kokocinski, F.24
Kulesha, E.25
Lawson, D.26
Longden, I.27
Melsopp, C.28
Megy, K.29
Meidl, P.30
Ouverdin, B.31
Parker, A.32
Prlic, A.33
Rice, S.34
Rios, D.35
Schuster, M.36
Sealy, I.37
Severin, J.38
Slater, G.39
Smedley, D.40
Spudich, G.41
Trevanion, S.42
Vilella, A.43
Vogel, J.44
White, S.45
Wood, M.46
Cox, T.47
Curwen, V.48
Durbin, R.49
Fernandez-Suarez, X.M.50
Flicek, P.51
Kasprzyk, A.52
Proctor, G.53
Searle, S.54
Smith, J.55
Ureta-Vidal, A.56
Birney, E.57
more..
-
36
-
-
9144269670
-
EnsMart: A generic system for fast and flexible access to biological data
-
10.1101/gr.1645104. 14707178
-
EnsMart: a generic system for fast and flexible access to biological data. A Kasprzyk D Keefe D Smedley D London W Spooner C Melsopp M Hammond P Rocca-Serra T Cox E Birney, Genome Res 2004 14 160 9 10.1101/gr.1645104 14707178
-
(2004)
Genome Res
, vol.14
, pp. 160-9
-
-
Kasprzyk, A.1
Keefe, D.2
Smedley, D.3
London, D.4
Spooner, W.5
Melsopp, C.6
Hammond, M.7
Rocca-Serra, P.8
Cox, T.9
Birney, E.10
|