-
1
-
-
0028806782
-
Genome sequence comparison and scenarios for gene rearrangements: A test case
-
Hannenhalli S, Chappey C, Koonin EV, Pevzner PA: Genome sequence comparison and scenarios for gene rearrangements: a test case. Genomics 1995, 30:299-311.
-
(1995)
Genomics
, vol.30
, pp. 299-311
-
-
Hannenhalli, S.1
Chappey, C.2
Koonin, E.V.3
Pevzner, P.A.4
-
2
-
-
0036372455
-
Fast phylogenetic methods for the analysis of genome rearrangement data: An empirical study
-
Wang LS, Jansen RK, Moret BM, Raubeson LA, Warnow T: Fast phylogenetic methods for the analysis of genome rearrangement data: an empirical study. Pac Symp Biocomput 2002:524-535.
-
(2002)
Pac Symp Biocomput
, pp. 524-535
-
-
Wang, L.S.1
Jansen, R.K.2
Moret, B.M.3
Raubeson, L.A.4
Warnow, T.5
-
3
-
-
14544300681
-
A Bayesian Analysis of Metazoan Mitochondrial Genome Arrangements
-
Larget B, Simon DL, Kadane JB, Sweet D: A Bayesian Analysis of Metazoan Mitochondrial Genome Arrangements. Mol Biol Evol 2005, 22(3):486-95.
-
(2005)
Mol Biol Evol
, vol.22
, Issue.3
, pp. 486-495
-
-
Larget, B.1
Simon, D.L.2
Kadane, J.B.3
Sweet, D.4
-
4
-
-
5444264964
-
Chloroplast DNA rearrangements in Campanulaceae: Phylogenetic utility of highly rearranged genomes
-
Cosner ME, Raubeson LA, Jansen RK: Chloroplast DNA rearrangements in Campanulaceae: phylogenetic utility of highly rearranged genomes. BMC Evol Biol 2004, 4:27.
-
(2004)
BMC Evol Biol
, vol.4
, pp. 27
-
-
Cosner, M.E.1
Raubeson, L.A.2
Jansen, R.K.3
-
5
-
-
22744440499
-
Dynamics of mammalian chromosome evolution inferred from multispecies comparative maps
-
Murphy WJ, Larkin DM, Everts-van der Wind A, Bourque G, Tesler G, Auvil L, Beever JE, Chowdhary BP, Galibert F, Gatzke L, Hitte C, Meyers SN, Milan D, Ostrander EA, Pape G, Parker HG, Raudsepp T, Rogatcheva MB, Schook LB, Skow LC, Welge M, Womack JE, O'Brien S J, Pevzner PA, Lewin HA: Dynamics of mammalian chromosome evolution inferred from multispecies comparative maps. Science 2005, 309:613-617.
-
(2005)
Science
, vol.309
, pp. 613-617
-
-
Murphy, W.J.1
Larkin, D.M.2
Everts-van Der Wind, A.3
Bourque, G.4
Tesler, G.5
Auvil, L.6
Beever, J.E.7
Chowdhary, B.P.8
Galibert, F.9
Gatzke, L.10
Hitte, C.11
Meyers, S.N.12
Milan, D.13
Ostrander, E.A.14
Pape, G.15
Parker, H.G.16
Raudsepp, T.17
Rogatcheva, M.B.18
Schook, L.B.19
Skow, L.C.20
Welge, M.21
Womack, J.E.22
O'Brien, S.J.23
Pevzner, P.A.24
Lewin, H.A.25
more..
-
6
-
-
0000791476
-
Lengths of chromosomal segments conserved since divergence of man and mouse
-
Nadeau JH, Taylor BA: Lengths of chromosomal segments conserved since divergence of man and mouse. Proc Natl Acad Sci U S A 1984, 81:814-818.
-
(1984)
Proc Natl Acad Sci U S A
, vol.81
, pp. 814-818
-
-
Nadeau, J.H.1
Taylor, B.A.2
-
7
-
-
0038271921
-
Human and mouse genomic sequences reveal extensive breakpoint reuse in mammalian evolution
-
Pevzner P, Tesler G: Human and mouse genomic sequences reveal extensive breakpoint reuse in mammalian evolution. Proc Natl Acad Sci U S A 2003, 100:7672-7677.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 7672-7677
-
-
Pevzner, P.1
Tesler, G.2
-
8
-
-
4444264564
-
Hotspots of mammalian chromosomal evolution
-
Bailey JA, Baertsch R, Kent WJ, Haussler D, Eichler EE: Hotspots of mammalian chromosomal evolution. Genome Biol 2004, 5:R23.
-
(2004)
Genome Biol
, vol.5
-
-
Bailey, J.A.1
Baertsch, R.2
Kent, W.J.3
Haussler, D.4
Eichler, E.E.5
-
9
-
-
28644444691
-
Murine segmental duplications are hot spots for chromosome and gene evolution
-
Armengol L, Marques-Bonet T, Cheung J, Khaja R, Gonzalez JR, Scherer SW, Navarro A, Estivill X: Murine segmental duplications are hot spots for chromosome and gene evolution. Genomics 2005, 86:692-700.
-
(2005)
Genomics
, vol.86
, pp. 692-700
-
-
Armengol, L.1
Marques-Bonet, T.2
Cheung, J.3
Khaja, R.4
Gonzalez, J.R.5
Scherer, S.W.6
Navarro, A.7
Estivill, X.8
-
10
-
-
2442462216
-
Chromosomal Breakpoint Re-use in the Inference of Geome Sequence Rearrangement
-
Edited by: S. Istrail, P. Pevzner and M. Waterman. The Association for Computing Machinery
-
Sankoff D, Trinh P: Chromosomal Breakpoint Re-use in the Inference of Geome Sequence Rearrangement. In Proceedings of the eighth annual international conference on Computational molecular biology Edited by: S. Istrail, P. Pevzner and M. Waterman. The Association for Computing Machinery; 2004:30-35.
-
(2004)
Proceedings of the Eighth Annual International Conference on Computational Molecular Biology
, pp. 30-35
-
-
Sankoff, D.1
Trinh, P.2
-
11
-
-
24744467149
-
Genomic features in the breakpoint regions between syntenic blocks
-
Trinh P, McLysaght A, Sankoff D: Genomic features in the breakpoint regions between syntenic blocks. Bioinformatics 2004, 20 Suppl 1:1318-1325.
-
(2004)
Bioinformatics
, vol.20
, Issue.SUPPL. 1
, pp. 1318-1325
-
-
Trinh, P.1
McLysaght, A.2
Sankoff, D.3
-
12
-
-
0041878461
-
Enrichment of segmental duplications in regions of breaks of synteny between the human and mouse genomes suggest their involvement in evolutionary rearrangements
-
Armengol L, Pujana MA, Cheung J, Scherer SW, Estivill X: Enrichment of segmental duplications in regions of breaks of synteny between the human and mouse genomes suggest their involvement in evolutionary rearrangements. Hum Mol Genet 2003, 12:2201-2208.
-
(2003)
Hum Mol Genet
, vol.12
, pp. 2201-2208
-
-
Armengol, L.1
Pujana, M.A.2
Cheung, J.3
Scherer, S.W.4
Estivill, X.5
-
13
-
-
0037162715
-
HIV-1 integration in the human genome favors active genes and local hotspots
-
Schroder AR, Shinn P, Chen H, Berry C, Ecker JR, Bushman F: HIV-1 integration in the human genome favors active genes and local hotspots. Cell 2002, 110:521-529.
-
(2002)
Cell
, vol.110
, pp. 521-529
-
-
Schroder, A.R.1
Shinn, P.2
Chen, H.3
Berry, C.4
Ecker, J.R.5
Bushman, F.6
-
14
-
-
0024344911
-
Comparative mapping of the constitutional and tumor-associated 11;22 translocations
-
Budarf M, Sellinger B, Griffin C, Emanuel BS: Comparative mapping of the constitutional and tumor-associated 11;22 translocations. Am J Hum Genet 1989, 45:128-139.
-
(1989)
Am J Hum Genet
, vol.45
, pp. 128-139
-
-
Budarf, M.1
Sellinger, B.2
Griffin, C.3
Emanuel, B.S.4
-
15
-
-
0036829790
-
Impact of DNA amplification on gene expression patterns in breast cancer
-
Hyman E, Kauraniemi P, Hautaniemi S, Wolf M, Mousses S, Rozenblum E, Ringner M, Sauter G, Monni O, Elkahloun A, Kallioniemi OP, Kallioniemi A: Impact of DNA amplification on gene expression patterns in breast cancer. Cancer Res 2002, 62:6240-6245.
-
(2002)
Cancer Res
, vol.62
, pp. 6240-6245
-
-
Hyman, E.1
Kauraniemi, P.2
Hautaniemi, S.3
Wolf, M.4
Mousses, S.5
Rozenblum, E.6
Ringner, M.7
Sauter, G.8
Monni, O.9
Elkahloun, A.10
Kallioniemi, O.P.11
Kallioniemi, A.12
-
16
-
-
0043264447
-
Translocation and gross deletion breakpoints in human inherited disease and cancer I: Nucleotide composition and recombination-associated motifs
-
Abeysinghe SS, Chuzhanova N, Krawczak M, Ball EV, Cooper DN: Translocation and gross deletion breakpoints in human inherited disease and cancer I: Nucleotide composition and recombination-associated motifs. Hum Mutat 2003, 22:229-244.
-
(2003)
Hum Mutat
, vol.22
, pp. 229-244
-
-
Abeysinghe, S.S.1
Chuzhanova, N.2
Krawczak, M.3
Ball, E.V.4
Cooper, D.N.5
-
17
-
-
1542748076
-
Aligning multiple genomic sequences with the threaded blockset aligner
-
Blanchette M, Kent WJ, Riemer C, Elnitski L, Smit AF, Roskin KM, Baertsch R, Rosenbloom K, Clawson H, Green ED, Haussler D, Miller W: Aligning multiple genomic sequences with the threaded blockset aligner. Genome Res 2004, 14:708-715.
-
(2004)
Genome Res
, vol.14
, pp. 708-715
-
-
Blanchette, M.1
Kent, W.J.2
Riemer, C.3
Elnitski, L.4
Smit, A.F.5
Roskin, K.M.6
Baertsch, R.7
Rosenbloom, K.8
Clawson, H.9
Green, E.D.10
Haussler, D.11
Miller, W.12
-
18
-
-
24344500211
-
Initial sequence of the chimpanzee genome and comparison with the human genome
-
Consortium CG: Initial sequence of the chimpanzee genome and comparison with the human genome. Nature 2005, 437:69-87.
-
(2005)
Nature
, vol.437
, pp. 69-87
-
-
Consortium, C.G.1
-
19
-
-
0042027896
-
Structural dynamics of eukaryotic chromosome evolution
-
Eichler EE, Sankoff D: Structural dynamics of eukaryotic chromosome evolution. Science 2003, 301:793-797.
-
(2003)
Science
, vol.301
, pp. 793-797
-
-
Eichler, E.E.1
Sankoff, D.2
-
20
-
-
0037062433
-
Mammalian mitogenomic relationships and the root of the eutherian tree
-
Arnason U, Adegoke JA, Bodin K, Born EW, Esa YB, Gullberg A, Nilsson M, Short RV, Xu X, Janke A: Mammalian mitogenomic relationships and the root of the eutherian tree. Proc Natl Acad Sci U S A 2002, 99:8151-8156.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 8151-8156
-
-
Arnason, U.1
Adegoke, J.A.2
Bodin, K.3
Born, E.W.4
Esa, Y.B.5
Gullberg, A.6
Nilsson, M.7
Short, R.V.8
Xu, X.9
Janke, A.10
-
21
-
-
0141596080
-
The dog genome: Survey sequencing and comparative analysis
-
Kirkness EF, Bafna V, Halpern AL, Levy S, Remington K, Rusch DB, Delcher AL, Pop M, Wang W, Fraser CM, Venter JC: The dog genome: survey sequencing and comparative analysis. Science 2003, 301:1898-1903.
-
(2003)
Science
, vol.301
, pp. 1898-1903
-
-
Kirkness, E.F.1
Bafna, V.2
Halpern, A.L.3
Levy, S.4
Remington, K.5
Rusch, D.B.6
Delcher, A.L.7
Pop, M.8
Wang, W.9
Fraser, C.M.10
Venter, J.C.11
-
22
-
-
0035252080
-
Molecular phylogenetics and the origins of placental mammals
-
Murphy WJ, Eizirik E, Johnson WE, Zhang YP, Ryder OA, O'Brien SJ: Molecular phylogenetics and the origins of placental mammals. Nature 2001, 409:614-618.
-
(2001)
Nature
, vol.409
, pp. 614-618
-
-
Murphy, W.J.1
Eizirik, E.2
Johnson, W.E.3
Zhang, Y.P.4
Ryder, O.A.5
O'Brien, S.J.6
-
23
-
-
28644447707
-
Genome sequence, comparative analysis and haplotype structure of the domestic dog
-
Lindblad-Toh K, Wade CM, Mikkelsen TS, Karlsson EK, Jaffe DB, Kamal M, Clamp M, Chang JL, Kulbokas EJ 3rd, Zody MC, Mauceli E, Xie X, Breen M, Wayne RK, Ostrander EA, Ponting CP, Galibert F, Smith DR, DeJong PJ, Kirkness E, Alvarez P, Biagi T, Brockman W, Butler J, Chin CW, Cook A, Cuff J, Daly MJ, DeCaprio D, Gnerre S, Grabherr M, Kellis M, Kleber M, Bardeleben C, Goodstadt L, Heger A, Hitte C, Kim L, Koepfli KP, Parker HG, Pollinger JP, Searle SM, Sutter NB, Thomas R, Webber C, Baldwin J, Abebe A, Abouelleil A, Aftuck L, Ait-Zahra M, Aldredge T, Allen N, An P, Anderson S, Antoine C, Arachchi H, Aslam A, Ayotte L, Bachantsang P, Barry A, Bayul T, Benamara M, Berlin A, Bessette D, Blitshteyn B, Bloom T, Blye J, Boguslavskiy L, Bonnet C, Boukhgalter B, Brown A, Cahill P, Calixte N, Camarata J, Cheshatsang Y, Chu J, Citroen M, Collymore A, Cooke P, Dawoe T, Daza R, Decktor K, DeGray S, Dhargay N, Dooley K, Dorje P, Dorjee K, Dorris L, Duffey N, Dupes A, Egbiremolen O, Elong R, Falk J, Farina A, Faro S, Ferguson D, Ferreira P, Fisher S, FitzGerald M, Foley K, Foley C, Franke A, Friedrich D, Gage D, Garber M, Gearin G, Giannoukos G, Goode T, Goyette A, Graham J, Grandbois E, Gyaltsen K, Hafez N, Hagopian D, Hagos B, Hall J, Healy C, Hegarty R, Honan T, Horn A, Houde N, Hughes L, Hunnicutt L, Husby M, Jester B, Jones C, Kamat A, Kanga B, Kells C, Khazanovich D, Kieu AC, Kisner P, Kumar M, Lance K, Landers T, Lara M, Lee W, Leger JP, Lennon N, Leuper L, LeVine S, Liu J, Liu X, Lokyitsang Y, Lokyitsang T, Lui A, Macdonald J, Major J, Marabella R, Maru K, Matthews C, McDonough S, Mehta T, Meldrim J, Melnikov A, Meneus L, Mihalev A, Mihova T, Miller K, Mittelman R, Mlenga V, Mulrain L, Munson G, Navidi A, Naylor J, Nguyen T, Nguyen N, Nguyen C, Nicol R, Norbu N, Norbu C, Novod N, Nyima T, Olandt P, O'Neill B, O'Neill K, Osman S, Oyono L, Patti C, Perrin D, Phunkhang P, Pierre F, Priest M, Rachupka A, Raghuraman S, Rameau R, Ray V, Raymond C, Rege F, Rise C, Rogers J, Rogov P, Sahalie J, Settipalli S, Sharpe T, Shea T, Sheehan M, Sherpa N, Shi J, Shih D, Sloan J, Smith C, Sparrow T, Stalker J, Stange-Thomann N, Stavropoulos S, Stone C, Stone S, Sykes S, Tchuinga P, Tenzing P, Tesfaye S, Thoulutsang D, Thoulutsang Y, Topham K, Topping I, Tsamla T, Vassiliev H, Venkataraman V, Vo A, Wangchuk T, Wangdi T, Weiand M, Wilkinson J, Wilson A, Yadav S, Yang S, Yang X, Young G, Yu Q, Zainoun J, Zembek L, Zimmer A, Lander ES: Genome sequence, comparative analysis and haplotype structure of the domestic dog. Nature 2005, 438:803-819.
-
(2005)
Nature
, vol.438
, pp. 803-819
-
-
Lindblad-Toh, K.1
Wade, C.M.2
Mikkelsen, T.S.3
Karlsson, E.K.4
Jaffe, D.B.5
Kamal, M.6
Clamp, M.7
Chang, J.L.8
Kulbokas III, E.J.9
Zody, M.C.10
Mauceli, E.11
Xie, X.12
Breen, M.13
Wayne, R.K.14
Ostrander, E.A.15
Ponting, C.P.16
Galibert, F.17
Smith, D.R.18
DeJong, P.J.19
Kirkness, E.20
Alvarez, P.21
Biagi, T.22
Brockman, W.23
Butler, J.24
Chin, C.W.25
Cook, A.26
Cuff, J.27
Daly, M.J.28
DeCaprio, D.29
Gnerre, S.30
Grabherr, M.31
Kellis, M.32
Kleber, M.33
Bardeleben, C.34
Goodstadt, L.35
Heger, A.36
Hitte, C.37
Kim, L.38
Koepfli, K.P.39
Parker, H.G.40
Pollinger, J.P.41
Searle, S.M.42
Sutter, N.B.43
Thomas, R.44
Webber, C.45
Baldwin, J.46
Abebe, A.47
Abouelleil, A.48
Aftuck, L.49
Ait-Zahra, M.50
Aldredge, T.51
Allen, N.52
An, P.53
Anderson, S.54
Antoine, C.55
Arachchi, H.56
Aslam, A.57
Ayotte, L.58
Bachantsang, P.59
Barry, A.60
Bayul, T.61
Benamara, M.62
Berlin, A.63
Bessette, D.64
Blitshteyn, B.65
Bloom, T.66
Blye, J.67
Boguslavskiy, L.68
Bonnet, C.69
Boukhgalter, B.70
Brown, A.71
Cahill, P.72
Calixte, N.73
Camarata, J.74
Cheshatsang, Y.75
Chu, J.76
Citroen, M.77
Collymore, A.78
Cooke, P.79
Dawoe, T.80
Daza, R.81
Decktor, K.82
DeGray, S.83
Dhargay, N.84
Dooley, K.85
Dorje, P.86
Dorjee, K.87
Dorris, L.88
Duffey, N.89
Dupes, A.90
Egbiremolen, O.91
Elong, R.92
Falk, J.93
Farina, A.94
Faro, S.95
Ferguson, D.96
Ferreira, P.97
Fisher, S.98
FitzGerald, M.99
more..
-
24
-
-
2442680252
-
Analysis of segmental duplications and genome assembly in the mouse
-
Bailey JA, Church DM, Ventura M, Rocchi M, Eichler EE: Analysis of segmental duplications and genome assembly in the mouse. Genome Res 2004, 14:789-801.
-
(2004)
Genome Res
, vol.14
, pp. 789-801
-
-
Bailey, J.A.1
Church, D.M.2
Ventura, M.3
Rocchi, M.4
Eichler, E.E.5
-
25
-
-
33751184991
-
-
MultiZ8wayAlignments: hgdownload.cse.ucsc.edu/goldenPath/hg17/multiz8way/ . .
-
MultiZ8wayAlignments
-
-
-
26
-
-
0141815478
-
Evolution's cauldron: Duplication, deletion, and rearrangement in the mouse and human genomes
-
Kent WJ, Baertsch R, Hinrichs A, Miller W, Haussler D: Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes. Proc Natl Acad Sci U S A 2003, 100:11484-11489.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 11484-11489
-
-
Kent, W.J.1
Baertsch, R.2
Hinrichs, A.3
Miller, W.4
Haussler, D.5
-
27
-
-
33751174589
-
-
SegDup
-
SegDup: hgdownload.cse.ucsc.edu/goldenPath/hg17/database/. 2005.
-
(2005)
-
-
|