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Volumn 7, Issue 5, 2010, Pages 564-568

E. coli 6S RNA: A universal transcriptional regulator within the centre of growth adaptation

Author keywords

Growth regulation; NTP pool; Regulatory RNA; RNA polymerase; Transcription

Indexed keywords

BACTERIAL RNA; CARRIER PROTEIN; MESSENGER RNA; RIBOSOME PROTEIN; RNA POLYMERASE; SIGMA FACTOR;

EID: 78649389733     PISSN: 15476286     EISSN: 15558584     Source Type: Journal    
DOI: 10.4161/rna.7.5.12969     Document Type: Review
Times cited : (15)

References (30)
  • 1
    • 0015208767 scopus 로고
    • Sequence of 6S RNA of E. coli
    • Brownlee GG. Sequence of 6S RNA of E. coli. Nat New Biol 1971; 229:147-9.
    • (1971) Nat New Biol , vol.229 , pp. 147-149
    • Brownlee, G.G.1
  • 2
    • 0034625237 scopus 로고    scopus 로고
    • 6S RNA regulates E. coli RNA polymerase activity
    • Wassarman KM, Storz G. 6S RNA regulates E. coli RNA polymerase activity. Cell 2000; 101:613-23.
    • (2000) Cell , vol.101 , pp. 613-623
    • Wassarman, K.M.1    Storz, G.2
  • 3
    • 0032980156 scopus 로고    scopus 로고
    • Transcriptional organization and role of the Escherichia coli rsd gene, encoding the regulator of RNA polymerase Sigm D
    • Jishage M, Ishihama A. Transcriptional organization and role of the Escherichia coli rsd gene, encoding the regulator of RNA polymerase Sigm D. J Bacteriol 1999; 181:3768-76.
    • (1999) J Bacteriol , vol.181 , pp. 3768-3776
    • Jishage, M.1    Ishihama, A.2
  • 4
    • 34247633645 scopus 로고    scopus 로고
    • The Escherichia coli regulator of sigma 70 protein, Rsd, can upregulate some stress-dependent promoters by sequestering sigma 70
    • Mitchell JE, Oshima T, Piper SE, Webster CL, Westblade LF, Karimova G, et al. The Escherichia coli regulator of sigma 70 protein, Rsd, can upregulate some stress-dependent promoters by sequestering sigma 70. J Bacteriol 2007; 189:3489-95.
    • (2007) J Bacteriol , vol.189 , pp. 3489-3495
    • Mitchell, J.E.1    Oshima, T.2    Piper, S.E.3    Webster, C.L.4    Westblade, L.F.5    Karimova, G.6
  • 5
    • 18344371528 scopus 로고    scopus 로고
    • A highly conserved 6S RNA structure is required for regulation of transcription
    • Trotochaud AE, Wassarman KM. A highly conserved 6S RNA structure is required for regulation of transcription. Nature Structural Biol 2005; 12:313-9.
    • (2005) Nature Structural Biol , vol.12 , pp. 313-319
    • Trotochaud, A.E.1    Wassarman, K.M.2
  • 6
    • 3242807381 scopus 로고    scopus 로고
    • 6S RNA function enhances long-term cell survival
    • Trotochaud AE, Wassarman KM. 6S RNA function enhances long-term cell survival. J Bacteriol 2004; 186:4978-85.
    • (2004) J Bacteriol , vol.186 , pp. 4978-4985
    • Trotochaud, A.E.1    Wassarman, K.M.2
  • 7
    • 33744774173 scopus 로고    scopus 로고
    • 6S RNA Regulation of pspF Transcription Leads to Altered Cell Survival at High pH
    • Trotochaud AE, Wassarman KM. 6S RNA Regulation of pspF Transcription Leads to Altered Cell Survival at High pH. J Bacteriol 2006; 188:3936-43.
    • (2006) J Bacteriol , vol.188 , pp. 3936-3943
    • Trotochaud, A.E.1    Wassarman, K.M.2
  • 8
    • 34247860970 scopus 로고    scopus 로고
    • Studies on the function of the riboregulator 6S RNA from E. coli: RNA polymerase binding, inhibition of in vitro transcription and synthesis of RNA-directed de novo transcripts
    • Gildehaus N, Neusser T, Wurm R, Wagner R. Studies on the function of the riboregulator 6S RNA from E. coli: RNA polymerase binding, inhibition of in vitro transcription and synthesis of RNA-directed de novo transcripts. Nucleic Acids Res 2007; 35:1885-96.
    • (2007) Nucleic Acids Res , vol.35 , pp. 1885-1896
    • Gildehaus, N.1    Neusser, T.2    Wurm, R.3    Wagner, R.4
  • 9
    • 39849104161 scopus 로고    scopus 로고
    • 70
    • DOI 10.1111/j.1365-2958.2008.06117.x
    • Cavanagh AT, Klocko AD, Liu X, Wassarman KM. Promoter specificity for 6S RNA regulation of transcription is determined by core promoter sequences and competition for region 4.2 of sigma 70. Mol Microbiol 2008; 67:1242-56. (Pubitemid 351316951)
    • (2008) Molecular Microbiology , vol.67 , Issue.6 , pp. 1242-1256
    • Cavanagh, A.T.1    Klocko, A.D.2    Liu, X.3    Wassarman, K.M.4
  • 10
    • 77949481723 scopus 로고    scopus 로고
    • Depletion of the non-coding regulatory 6S RNA in E. coli causes a surprising reduction in the expression of the translation machinery
    • Neußer T, Polen T, Geißen R, Wagner R. Depletion of the non-coding regulatory 6S RNA in E. coli causes a surprising reduction in the expression of the translation machinery. BMC Genomics 2010; 11:165-78.
    • (2010) BMC Genomics , vol.11 , pp. 165-178
    • Neußer, T.1    Polen, T.2    Geißen, R.3    Wagner, R.4
  • 11
    • 0019436189 scopus 로고
    • Feedback regulation of ribosomal protein synthesis in E. coli: Localization of the mRNA target sites for repressor action of ribosomal protein L1
    • Yates JL, Nomura M. Feedback regulation of ribosomal protein synthesis in E. coli: localization of the mRNA target sites for repressor action of ribosomal protein L1. Cell 1981; 24:243-9.
    • (1981) Cell , vol.24 , pp. 243-249
    • Yates, J.L.1    Nomura, M.2
  • 12
    • 84922061102 scopus 로고    scopus 로고
    • Translational components in prokaryotes: Genetics and regulation of ribosomes
    • John Willey & Sons: Chichester
    • Wagner R. Translational components in prokaryotes: genetics and regulation of ribosomes, in Enzyclopedia of Life Sciences (ELS). John Willey & Sons: Chichester 2009.
    • (2009) Enzyclopedia of Life Sciences (ELS)
    • Wagner, R.1
  • 13
    • 0031443321 scopus 로고    scopus 로고
    • Transcription regulation by initiating NTP concentration: RRNA synthesis in bacteria
    • DOI 10.1126/science.278.5346.2092
    • Gaal T, Bartlett MS, Ross W, Turnbough C, Gourse RL. Transcription regulation by initiating NTP concentration: rRNA synthesis in bacteria. Science 1997; 278:2092-7. (Pubitemid 28028313)
    • (1997) Science , vol.278 , Issue.5346 , pp. 2092-2097
    • Gaal, T.1    Bartlett, M.S.2    Ross, W.3    Turnbough Jr., C.L.4    Gourse, R.L.5
  • 15
    • 78649391519 scopus 로고    scopus 로고
    • ppGpp Signalling
    • Krämer R, Jung K, Weinheim, Eds. Wiley-VCH Verlag
    • Wagner R. ppGpp Signalling. Bacterial Signalling, Krämer R, Jung K, Weinheim, Eds. Wiley-VCH Verlag 2010; 395-414.
    • (2010) Bacterial Signalling , pp. 395-414
    • Wagner, R.1
  • 16
    • 45149084297 scopus 로고    scopus 로고
    • The identity of the transcription +1 position is crucial for changes in gene expression in response to amino acid starvation in Bacillus subtilis
    • DOI 10.1111/j.1365-2958.2008.06256.x
    • Krasny L, Tiserova H, Jonak J, Rejman D, Sanderova H. The identity of the transcription +1 position is crucial for changes in gene expression in response to amino acid starvation in Bacillus subtilis. Mol Microbiol 2008; 69:42-54. (Pubitemid 351832752)
    • (2008) Molecular Microbiology , vol.69 , Issue.1 , pp. 42-54
    • Krasny, L.1    Tiserova, H.2    Jonak, J.3    Rejman, D.4    Sanderova, H.5
  • 17
    • 10044225617 scopus 로고    scopus 로고
    • An alternative strategy for bacterial ribosome synthesis: Bacillus subtilis rRNA transcription regulation
    • Krasny L, Gourse RL. An alternative strategy for bacterial ribosome synthesis: Bacillus subtilis rRNA transcription regulation. EMBO J 2004; 23:4473-83.
    • (2004) EMBO J , vol.23 , pp. 4473-4483
    • Krasny, L.1    Gourse, R.L.2
  • 18
    • 33845450357 scopus 로고    scopus 로고
    • Synthesis-mediated release of a small RNA inhibitor of RNA polymerase
    • Wassarman KM, Saecker RM. Synthesis-mediated release of a small RNA inhibitor of RNA polymerase. Science 2006; 314:1601-3.
    • (2006) Science , vol.314 , pp. 1601-1603
    • Wassarman, K.M.1    Saecker, R.M.2
  • 19
    • 77749336620 scopus 로고    scopus 로고
    • 6S RNA-dependent inhibition of RNA polymerase is released by RNA-dependent synthesis of small de novo products
    • Wurm R, Neußer T, Wagner R. 6S RNA-dependent inhibition of RNA polymerase is released by RNA-dependent synthesis of small de novo products. Biol Chem 2010; 39:187-96.
    • (2010) Biol Chem , vol.39 , pp. 187-196
    • Wurm, R.1    Neußer, T.2    Wagner, R.3
  • 20
    • 0028888071 scopus 로고
    • The Escherichia coli DNA-binding protein H-NS is one of the first proteins to be synthesized after a nutritional upshift
    • Laurent-Winter C, Lejeune P, Danchin A. The Escherichia coli DNA-binding protein H-NS is one of the first proteins to be synthesized after a nutritional upshift. Res Microbiol 1995; 146:5-16.
    • (1995) Res Microbiol , vol.146 , pp. 5-16
    • Laurent-Winter, C.1    Lejeune, P.2    Danchin, A.3
  • 21
    • 0026620949 scopus 로고
    • Dramatic changes in Fis levels upon nutrient upshift in Escherichia coli
    • Ball CA, Osuna R, Ferguson KC, Johnson RC. Dramatic changes in Fis levels upon nutrient upshift in Escherichia coli. J Bacteriol 1992; 174:8043-56.
    • (1992) J Bacteriol , vol.174 , pp. 8043-8056
    • Ball, C.A.1    Osuna, R.2    Ferguson, K.C.3    Johnson, R.C.4
  • 22
    • 0025328743 scopus 로고
    • Ribosomes as sensors of heat and cold shock in Escherichia coli
    • VanBogelen RA, Neidhardt FC. Ribosomes as sensors of heat and cold shock in Escherichia coli. Proc Natl Acad Sci USA 1990; 87:5589-93.
    • (1990) Proc Natl Acad Sci USA , vol.87 , pp. 5589-5593
    • VanBogelen, R.A.1    Neidhardt, F.C.2
  • 23
    • 0025825078 scopus 로고
    • Growth rate of Escherichia coli
    • Marr AG. Growth rate of Escherichia coli. Microbiol Rev 1991; 55:316-33.
    • (1991) Microbiol Rev , vol.55 , pp. 316-333
    • Marr, A.G.1
  • 24
    • 72949106705 scopus 로고    scopus 로고
    • A global view of Escherichia coli Rsd protein and its interactions
    • Piper SE, Mitchell JE, Lee DJ, Busby SJ. A global view of Escherichia coli Rsd protein and its interactions. Mol Biosyst 2009; 5:1943-7.
    • (2009) Mol Biosyst , vol.5 , pp. 1943-1947
    • Piper, S.E.1    Mitchell, J.E.2    Lee, D.J.3    Busby, S.J.4
  • 25
    • 33750479525 scopus 로고    scopus 로고
    • Acyl carrier protein/SpoT interaction, the switch linking SpoT-dependent stress response to fatty acid metabolism
    • DOI 10.1111/j.1365-2958.2006.05442.x
    • Battesti A, Bouveret E. Acyl carrier protein/SpoT interaction, the switch linking SpoT-dependent stress response to fatty acid metabolism. Mol Microbiol 2006; 62:1048-63. (Pubitemid 44655317)
    • (2006) Molecular Microbiology , vol.62 , Issue.4 , pp. 1048-1063
    • Battesti, A.1    Bouveret, E.2
  • 26
    • 0027464211 scopus 로고
    • Regulation of transcription of genes required for fatty acid transport and unsaturated fatty acid biosynthesis in Escherichia coli by FadR
    • DiRusso CC, Metzger AK, Heimert TL. Regulation of transcription of genes required for fatty acid transport and unsaturated fatty acid biosynthesis in Escherichia coli by FadR. Mol Microbiol 1993; 7:311-22.
    • (1993) Mol Microbiol , vol.7 , pp. 311-322
    • DiRusso, C.C.1    Metzger, A.K.2    Heimert, T.L.3
  • 27
    • 0037240787 scopus 로고    scopus 로고
    • A new Escherichia coli metabolic competency: Growth on fatty acids by a novel anaerobic beta-oxidation pathway
    • Campbell JW, Morgan-Kiss RM, Cronan JE Jr. A new Escherichia coli metabolic competency: growth on fatty acids by a novel anaerobic beta-oxidation pathway. Mol Microbiol 2003; 47:793-805.
    • (2003) Mol Microbiol , vol.47 , pp. 793-805
    • Campbell, J.W.1    Morgan-Kiss, R.M.2    Cronan Jr., J.E.3
  • 28
    • 0031983015 scopus 로고    scopus 로고
    • The fats of Escherichia coli during infancy and old age: Regulation by global regulators, alarmones and lipid intermediates
    • DiRusso CC, Nystrom T. The fats of Escherichia coli during infancy and old age: regulation by global regulators, alarmones and lipid intermediates. Mol Microbiol 1998; 27:1-8.
    • (1998) Mol Microbiol , vol.27 , pp. 1-8
    • DiRusso, C.C.1    Nystrom, T.2
  • 29
    • 0031597378 scopus 로고    scopus 로고
    • uspB, a new sigmaS-regulated gene in Escherichia coli which is required for stationary-phase resistance to ethanol
    • Farewell A, Kvint K, Nystrom T. uspB, a new sigmaS-regulated gene in Escherichia coli which is required for stationary-phase resistance to ethanol. J Bacteriol 1998; 180:6140-7.
    • (1998) J Bacteriol , vol.180 , pp. 6140-6147
    • Farewell, A.1    Kvint, K.2    Nystrom, T.3


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