-
1
-
-
0024603187
-
Isolation, characterization, and nucleotide sequence of appY, a regulatory gene for growth-phase-dependent gene expression in Escherichia coli
-
Altung, T., A. Nielsen, and F. G. Hansen. 1989. Isolation, characterization, and nucleotide sequence of appY, a regulatory gene for growth-phase-dependent gene expression in Escherichia coli. J. Bacteriol. 171:1683-1691.
-
(1989)
J. Bacteriol.
, vol.171
, pp. 1683-1691
-
-
Altung, T.1
Nielsen, A.2
Hansen, F.G.3
-
3
-
-
0031459386
-
A small stable RNA induced by oxidative stress: Role as a pleiotropic regulator and antimutator
-
Altuvia, S., D. Weinstein-Fischer, A. Zhang, L. Postow, and G. Storz. 1997. A small stable RNA induced by oxidative stress: role as a pleiotropic regulator and antimutator. Cell 90:43-53.
-
(1997)
Cell
, vol.90
, pp. 43-53
-
-
Altuvia, S.1
Weinstein-Fischer, D.2
Zhang, A.3
Postow, L.4
Storz, G.5
-
4
-
-
0035685975
-
Regulation of rRNA transcription correlates with nucleoside triphosphate sensing
-
Barker, M. M., and R. L. Gourse. 2001. Regulation of rRNA transcription correlates with nucleoside triphosphate sensing. J. Bacteriol. 183:6315-6323.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 6315-6323
-
-
Barker, M.M.1
Gourse, R.L.2
-
5
-
-
0035951305
-
Mechanism of regulation of transcription initiation by ppGpp. I. Effects of ppGpp on transcription initiation in vivo and in vitro
-
Barker, M. M., T. Gaal, C. Josaitis, and R. L. Gourse. 2001. Mechanism of regulation of transcription initiation by ppGpp. I. Effects of ppGpp on transcription initiation in vivo and in vitro. J. Mol. Biol. 305:673-686.
-
(2001)
J. Mol. Biol.
, vol.305
, pp. 673-686
-
-
Barker, M.M.1
Gaal, T.2
Josaitis, C.3
Gourse, R.L.4
-
6
-
-
0038013991
-
RNA polymerase holoenzyme: Structure, function and biological implications
-
Borukhov, S., and E. Nudler. 2003. RNA polymerase holoenzyme: structure, function and biological implications. Curr. Opin. Microbiol. 6:93-100.
-
(2003)
Curr. Opin. Microbiol.
, vol.6
, pp. 93-100
-
-
Borukhov, S.1
Nudler, E.2
-
7
-
-
0002644918
-
Extended -10 promoters
-
F. Eckstein and D. M. J. Lilley (ed.). Springer-Verlag, Berlin, Germany
-
Bown, J. A., K. A. Barne, S. D. Minchin, and S. J. W. Busby. 1997. Extended -10 promoters, p. 41-52. In F. Eckstein and D. M. J. Lilley (ed.), Nucleic acids and molecular biology, vol. 11. Springer-Verlag, Berlin, Germany.
-
(1997)
Nucleic Acids and Molecular Biology
, vol.11
, pp. 41-52
-
-
Bown, J.A.1
Barne, K.A.2
Minchin, S.D.3
Busby, S.J.W.4
-
8
-
-
0015208767
-
Sequence of 6S RNA of E. coli
-
Brownlee, G. G. 1971. Sequence of 6S RNA of E. coli. Nat. New Biol. 229:147-149.
-
(1971)
Nat. New Biol.
, vol.229
, pp. 147-149
-
-
Brownlee, G.G.1
-
9
-
-
0034192263
-
DNA sequence elements located immediately upstream of the -10 hexamer in Escherichia coli promoters: A systematic study
-
Burr, T., J. Mitchell, A. Kolb, S. Minchin, and S. Busby. 2000. DNA sequence elements located immediately upstream of the -10 hexamer in Escherichia coli promoters: a systematic study. Nucleic Acids Res. 28:1864-1870.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 1864-1870
-
-
Burr, T.1
Mitchell, J.2
Kolb, A.3
Minchin, S.4
Busby, S.5
-
10
-
-
0020560729
-
Segment-specific mutagenesis of the regulatory region in the Escherichia coli galactose operon: Isolation of mutations reducing the initiation of transcription and translation
-
Busby, S., and M. Dreyfus. 1983. Segment-specific mutagenesis of the regulatory region in the Escherichia coli galactose operon: isolation of mutations reducing the initiation of transcription and translation. Gene 21:121-131.
-
(1983)
Gene
, vol.21
, pp. 121-131
-
-
Busby, S.1
Dreyfus, M.2
-
11
-
-
0031844376
-
Negative regulation by RpoS: A case of sigma factor competition
-
Farewell, A., K. Kvint, and T. Nyström. 1998. Negative regulation by RpoS: a case of sigma factor competition. Mol. Microbiol. 29:1039-1051.
-
(1998)
Mol. Microbiol.
, vol.29
, pp. 1039-1051
-
-
Farewell, A.1
Kvint, K.2
Nyström, T.3
-
12
-
-
0344235402
-
The growth advantage in stationary phase phenotype conferred by rpoS mutations is dependent on the pH and nutrient environment
-
Farrell, M. J., and S. E. Finkel. 2003. The growth advantage in stationary phase phenotype conferred by rpoS mutations is dependent on the pH and nutrient environment. J. Bacteriol. 185:7044-7052.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 7044-7052
-
-
Farrell, M.J.1
Finkel, S.E.2
-
13
-
-
0035685198
-
DNA as a nutrient: Novel role for bacterial competence gene homologs
-
Finkel, S. E., and R. Kolter. 2001. DNA as a nutrient: novel role for bacterial competence gene homologs. J. Bacteriol. 183:6288-6293.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 6288-6293
-
-
Finkel, S.E.1
Kolter, R.2
-
14
-
-
0002345233
-
Long-term survival and evolution in the stationary phase in Escherichia coli
-
G. Storz and R. Hengge-Aronis (ed.). American Society for Microbiology, Washington, D.C.
-
Finkel, S. E., E. R. Zinser, and R. Kolter. 2000. Long-term survival and evolution in the stationary phase in Escherichia coli, p. 231-238. In G. Storz and R. Hengge-Aronis (ed.), Bacterial stress responses. American Society for Microbiology, Washington, D.C.
-
(2000)
Bacterial Stress Responses
, pp. 231-238
-
-
Finkel, S.E.1
Zinser, E.R.2
Kolter, R.3
-
15
-
-
0010505083
-
Life and death in stationary phase
-
S. J. W. Busby, C. M. Thomas, and N. L. Brown (ed.). Springer-Verlag, Berlin, Germany
-
Finkel, S. E., E. R. Zinser, S. Gupta, and R. Kolter. 1997. Life and death in stationary phase, p. 3-16. In S. J. W. Busby, C. M. Thomas, and N. L. Brown (ed.), Molecular microbiology. Springer-Verlag, Berlin, Germany.
-
(1997)
Molecular Microbiology
, pp. 3-16
-
-
Finkel, S.E.1
Zinser, E.R.2
Gupta, S.3
Kolter, R.4
-
17
-
-
0037112006
-
Stealth regulation: Biological circuits with small RNA switches
-
Gottesman, S. 2002. Stealth regulation: biological circuits with small RNA switches. Genes Dev. 16:2829-2842.
-
(2002)
Genes Dev.
, vol.16
, pp. 2829-2842
-
-
Gottesman, S.1
-
18
-
-
0242692671
-
Multiple sigma subunits and the partitioning of bacterial transcription space
-
Gruber, T. M., and C. A. Gross. 2003. Multiple sigma subunits and the partitioning of bacterial transcription space. Annu. Rev. Microbiol. 57:441-466.
-
(2003)
Annu. Rev. Microbiol.
, vol.57
, pp. 441-466
-
-
Gruber, T.M.1
Gross, C.A.2
-
19
-
-
0000291637
-
The general stress response in Escherichia coli
-
G. Storz and R. Hengge-Aronis (ed.). American Society for Microbiology, Washington, D.C.
-
Hengge-Aronis, R. 2000. The general stress response in Escherichia coli, p. 161-178. In G. Storz and R. Hengge-Aronis (ed.), Bacterial stress responses. American Society for Microbiology, Washington, D.C.
-
(2000)
Bacterial Stress Responses
, pp. 161-178
-
-
Hengge-Aronis, R.1
-
20
-
-
0037387973
-
A survey of small RNA-encoding genes in Escherichia coli
-
Hershberg, R., S. Altuvia, and H. Margalit. 2003. A survey of small RNA-encoding genes in Escherichia coli. Nucleic Acids Res. 31:1813-1820.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 1813-1820
-
-
Hershberg, R.1
Altuvia, S.2
Margalit, H.3
-
21
-
-
0035688744
-
Contributions of UP elements and transcription factor FIS to expression from the seven rrn P1 promoters in Escherichia coli
-
Hirvonen, C. A., W. Ross, C. E. Wozniak, E. Marasco, J. R. Anthony, S. E. Aiyar, V. H. Newburn, and R. L. Gourse. 2001. Contributions of UP elements and transcription factor FIS to expression from the seven rrn P1 promoters in Escherichia coli. J. Bacteriol. 183:6305-6314.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 6305-6314
-
-
Hirvonen, C.A.1
Ross, W.2
Wozniak, C.E.3
Marasco, E.4
Anthony, J.R.5
Aiyar, S.E.6
Newburn, V.H.7
Gourse, R.L.8
-
22
-
-
0021913190
-
Escherichia coli 6S RNA gene is part of a dual-function transcription unit
-
Hsu, L. M., J. Zagorski, A. Wang, and M. J. Fournier. 1985. Escherichia coli 6S RNA gene is part of a dual-function transcription unit. J. Bacteriol. 161:1162-1170.
-
(1985)
J. Bacteriol.
, vol.161
, pp. 1162-1170
-
-
Hsu, L.M.1
Zagorski, J.2
Wang, A.3
Fournier, M.J.4
-
23
-
-
0033021173
-
Modulation of the nucleoid, the transcription apparatus, and the translation machinery in bacteria for stationary phase survival
-
Ishihama, A. 1999. Modulation of the nucleoid, the transcription apparatus, and the translation machinery in bacteria for stationary phase survival. Genes Cells 4:135-143.
-
(1999)
Genes Cells
, vol.4
, pp. 135-143
-
-
Ishihama, A.1
-
24
-
-
0033765113
-
Functional modulation of Escherichia coli RNA polymerase
-
Ishihama, A. 2000. Functional modulation of Escherichia coli RNA polymerase. Annu. Rev. Microbiol. 54:499-518.
-
(2000)
Annu. Rev. Microbiol.
, vol.54
, pp. 499-518
-
-
Ishihama, A.1
-
25
-
-
0032574843
-
A stationary phase protein in Escherichia coli with binding activity to the major σ subunit of RNA polymerase
-
Jishage, M., and A. Ishihama. 1998. A stationary phase protein in Escherichia coli with binding activity to the major σ subunit of RNA polymerase. Proc. Natl. Acad. Sci. USA 95:4953-4958.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 4953-4958
-
-
Jishage, M.1
Ishihama, A.2
-
26
-
-
0032980156
-
Transcriptional organization and in vivo role of the Escherichia coli rsd gene, encoding the regulator of RNA polymerase sigma D
-
Jishage, M., and A. Ishihama. 1999. Transcriptional organization and in vivo role of the Escherichia coli rsd gene, encoding the regulator of RNA polymerase sigma D. J. Bacteriol. 181:3768-3776.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 3768-3776
-
-
Jishage, M.1
Ishihama, A.2
-
27
-
-
0037093379
-
Regulation of σ factor competition by the alarmone ppGpp
-
Jishage, M., K. Kvint, V. Shingler, and T. Nyström. 2002. Regulation of σ factor competition by the alarmone ppGpp. Genes Dev. 16:1260-1270.
-
(2002)
Genes Dev.
, vol.16
, pp. 1260-1270
-
-
Jishage, M.1
Kvint, K.2
Shingler, V.3
Nyström, T.4
-
28
-
-
0033639199
-
Riboregulation by DsrA RNA: Transactions for global economy
-
Lease, R. A., and M. Belfort. 2000. Riboregulation by DsrA RNA: transactions for global economy. Mol. Microbiol. 38:667-672.
-
(2000)
Mol. Microbiol.
, vol.38
, pp. 667-672
-
-
Lease, R.A.1
Belfort, M.2
-
29
-
-
0021950348
-
Escherichia coli 6S RNA is not essential for growth or protein secretion
-
Lee, C. A., M. J. Fournier, and J. Beckwith. 1985. Escherichia coli 6S RNA is not essential for growth or protein secretion. J. Bacteriol. 161:1156-1161.
-
(1985)
J. Bacteriol.
, vol.161
, pp. 1156-1161
-
-
Lee, C.A.1
Fournier, M.J.2
Beckwith, J.3
-
30
-
-
0035100582
-
Regulation of RpoS by a novel small RNA: The characterization of RprA
-
Majdalani, N., S. Chen, J. Murrow, K. St. John, and S. Gottesman. 2001. Regulation of RpoS by a novel small RNA: the characterization of RprA. Mol. Microbiol. 39:1382-1394.
-
(2001)
Mol. Microbiol.
, vol.39
, pp. 1382-1394
-
-
Majdalani, N.1
Chen, S.2
Murrow, J.3
St. John, K.4
Gottesman, S.5
-
31
-
-
0032514739
-
DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcription
-
Majdalani, N., C. Cunning, D. Sledjeski, T. Elliott, and S. Gottesman. 1998. DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcription. Proc. Natl. Acad. Sci. USA 95:12462-12467.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 12462-12467
-
-
Majdalani, N.1
Cunning, C.2
Sledjeski, D.3
Elliott, T.4
Gottesman, S.5
-
32
-
-
0037007078
-
A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli
-
Masse, E., and S. Gottesman. 2002. A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli. Proc. Natl. Acad. Sci. USA 99:4620-4625.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 4620-4625
-
-
Masse, E.1
Gottesman, S.2
-
34
-
-
0025366313
-
Cloning and sequencing of a putative Escherichia coli [NiFe] hydrogenase-1 operon containing six open reading frames
-
Menon, N. K., J. Robbins, H. D. Peck, Jr., C. Y. Chatelus, E.-S. Choi, and A. E. Przybyla. 1990. Cloning and sequencing of a putative Escherichia coli [NiFe] hydrogenase-1 operon containing six open reading frames. J. Bacteriol. 172:1969-1977.
-
(1990)
J. Bacteriol.
, vol.172
, pp. 1969-1977
-
-
Menon, N.K.1
Robbins, J.2
Peck Jr., H.D.3
Chatelus, C.Y.4
Choi, E.-S.5
Przybyla, A.E.6
-
35
-
-
0003785155
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
-
Miller, J. H. 1972. Experiments in molecular genetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
-
(1972)
Experiments in Molecular Genetics
-
-
Miller, J.H.1
-
36
-
-
0141605202
-
Identification and analysis of "extended - 10" promoters in Escherichia coli
-
Mitchell, J. E., D. Zheng, S. J. W. Busby, and S. D. Minchin. 2003. Identification and analysis of "extended - 10" promoters in Escherichia coli. Nucleic Acids Res. 31:4689-4695.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 4689-4695
-
-
Mitchell, J.E.1
Zheng, D.2
Busby, S.J.W.3
Minchin, S.D.4
-
37
-
-
0036645490
-
Spot42 RNA mediates discoordinate expression of the E. coli galactose operon
-
Møller, T., T. Franch, C. Udesen, K. Gerdes, and P. Valentin-Hansen. 2002. Spot42 RNA mediates discoordinate expression of the E. coli galactose operon. Genes Dev. 16:1696-1706.
-
(2002)
Genes Dev.
, vol.16
, pp. 1696-1706
-
-
Møller, T.1
Franch, T.2
Udesen, C.3
Gerdes, K.4
Valentin-Hansen, P.5
-
39
-
-
0033118280
-
Starvation, cessation of growth and bacterial aging
-
Nyström, T. 1999. Starvation, cessation of growth and bacterial aging. Curr. Opin. Biol. 2:214-219.
-
(1999)
Curr. Opin. Biol.
, vol.2
, pp. 214-219
-
-
Nyström, T.1
-
40
-
-
0028230951
-
Factor independent activation of rrnBP1. An "extended" promoter with an upstream element that dramatically increases promoter strength
-
Rao, L., W. Ross, J. A. Appleman, T. Gaal, S. Leirmo, P. J. Schlax, M. T. Record, Jr., and R. L. Gourse. 1994. Factor independent activation of rrnBP1. An "extended" promoter with an upstream element that dramatically increases promoter strength. J. Mol. Biol. 235:1421-1435.
-
(1994)
J. Mol. Biol.
, vol.235
, pp. 1421-1435
-
-
Rao, L.1
Ross, W.2
Appleman, J.A.3
Gaal, T.4
Leirmo, S.5
Schlax, P.J.6
Record Jr., M.T.7
Gourse, R.L.8
-
41
-
-
0034978781
-
Signal transduction cascade for regulation of RpoS: Temperature regulation of DsrA
-
Repoila, F., and S. Gottesman. 2001. Signal transduction cascade for regulation of RpoS: temperature regulation of DsrA. J. Bacteriol. 183:4012-4023.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 4012-4023
-
-
Repoila, F.1
Gottesman, S.2
-
42
-
-
0031697252
-
Global regulation by the small RNA-binding protein Csr and the non-coding RNA molecule CsrB
-
Romeo, T. 1998. Global regulation by the small RNA-binding protein Csr and the non-coding RNA molecule CsrB. Mol. Microbiol. 29:1321-1330.
-
(1998)
Mol. Microbiol.
, vol.29
, pp. 1321-1330
-
-
Romeo, T.1
-
43
-
-
0004214698
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
-
Silhavy, T. J., M. L. Berman, and L. W. Enquist. 1984. Experiments with gene fusions. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
-
(1984)
Experiments with Gene Fusions
-
-
Silhavy, T.J.1
Berman, M.L.2
Enquist, L.W.3
-
44
-
-
0037123632
-
An expanding universe of noncoding RNAs
-
Storz, G. 2002. An expanding universe of noncoding RNAs. Science 296: 1260-1263.
-
(2002)
Science
, vol.296
, pp. 1260-1263
-
-
Storz, G.1
-
45
-
-
0037133946
-
Small RNAs in bacteria: Diverse regulators of gene expression in response to environmental changes
-
Wassarman, K. M. 2002. Small RNAs in bacteria: diverse regulators of gene expression in response to environmental changes. Cell 109:141-144.
-
(2002)
Cell
, vol.109
, pp. 141-144
-
-
Wassarman, K.M.1
-
46
-
-
0035395606
-
Identification of novel small RNAs using comparative genomics and microarrays
-
Wassarman, K. M., F. Repoila, C. Rosenow, G. Storz, and S. Gottesman. 2001. Identification of novel small RNAs using comparative genomics and microarrays. Genes Dev. 15:1637-1651.
-
(2001)
Genes Dev.
, vol.15
, pp. 1637-1651
-
-
Wassarman, K.M.1
Repoila, F.2
Rosenow, C.3
Storz, G.4
Gottesman, S.5
-
47
-
-
0034625237
-
6S RNA regulates E. coli RNA polymerase activity
-
Wassarman, K. M., and G. Storz. 2000. 6S RNA regulates E. coli RNA polymerase activity. Cell 101:613-623.
-
(2000)
Cell
, vol.101
, pp. 613-623
-
-
Wassarman, K.M.1
Storz, G.2
-
48
-
-
0037172966
-
SOS-induced DNA polymerases enhance long-term survival and evolutionary fitness
-
Yeiser, B., E. D. Pepper, M. F. Goodman, and S. E. Finkel. 2002. SOS-induced DNA polymerases enhance long-term survival and evolutionary fitness. Proc. Natl. Acad. Sci. USA 99:8737-8741.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 8737-8741
-
-
Yeiser, B.1
Pepper, E.D.2
Goodman, M.F.3
Finkel, S.E.4
-
49
-
-
0037123763
-
Views of transcription initiation
-
Young, B. A., T. M. Gruber, and C. A. Gross. 2002. Views of transcription initiation. Cell 109:1-20.
-
(2002)
Cell
, vol.109
, pp. 1-20
-
-
Young, B.A.1
Gruber, T.M.2
Gross, C.A.3
-
50
-
-
0027216609
-
Escherichia coli mutants lacking NADH dehydrogenase I have a competitive disadvantage in stationary phase
-
Zambrano, M. M., and R. Kolter. 1993. Escherichia coli mutants lacking NADH dehydrogenase I have a competitive disadvantage in stationary phase. J. Bacteriol. 175:5642-5647.
-
(1993)
J. Bacteriol.
, vol.175
, pp. 5642-5647
-
-
Zambrano, M.M.1
Kolter, R.2
-
51
-
-
0027510647
-
Microbial competition: Escherichia coli mutants that take over stationary phase cultures
-
Zambrano, M. M., D. A. Siegele, M. Almiron, A. Tormo, and R. Kolter. 1993. Microbial competition: Escherichia coli mutants that take over stationary phase cultures. Science 259:1757-1760.
-
(1993)
Science
, vol.259
, pp. 1757-1760
-
-
Zambrano, M.M.1
Siegele, D.A.2
Almiron, M.3
Tormo, A.4
Kolter, R.5
|