메뉴 건너뛰기




Volumn 391, Issue 2-3, 2010, Pages 187-196

6S RNA-dependent inhibition of RNA polymerase is released by RNA-dependent synthesis of small de novo products

Author keywords

Nutritional upshift; Regulatory RNAs; Rifampicin; RNA polymerase; Stationary phase; Transcription initiation

Indexed keywords

RIFAMPICIN; RNA; RNA POLYMERASE;

EID: 77749336620     PISSN: 14316730     EISSN: 14374315     Source Type: Journal    
DOI: 10.1515/BC.2010.018     Document Type: Article
Times cited : (35)

References (32)
  • 1
    • 0028284379 scopus 로고
    • A mismatch bubble in double-stranded DNA suffices to direct precise transcription initiation by Escherichia coli RNA polymerase
    • Aiyar, S.E., Helmann, J.D., and deHaseth, P.L. (1994). A mismatch bubble in double-stranded DNA suffices to direct precise transcription initiation by Escherichia coli RNA polymerase. J. Biol. Chem. 269, 13179-13184.
    • (1994) J. Biol. Chem , vol.269 , pp. 13179-13184
    • Aiyar, S.E.1    Helmann, J.D.2    deHaseth, P.L.3
  • 2
    • 17844379221 scopus 로고    scopus 로고
    • 6S RNA is a widespread regulator of eubacterial RNA polymerase that resembles an open promoter
    • Barrick, J.E., Sudarsan, N., Weinberg, Z., Ruzzo, W.L., and Breaker, R.R. (2005). 6S RNA is a widespread regulator of eubacterial RNA polymerase that resembles an open promoter. RNA 11, 774-784.
    • (2005) RNA , vol.11 , pp. 774-784
    • Barrick, J.E.1    Sudarsan, N.2    Weinberg, Z.3    Ruzzo, W.L.4    Breaker, R.R.5
  • 3
    • 0027744758 scopus 로고
    • Recombinant Escherichia coli RNA polymerase: Purification of individually overexpressed subunits and in vitro assembly
    • Borukhov, S. and Goldfarb, A. (1993). Recombinant Escherichia coli RNA polymerase: purification of individually overexpressed subunits and in vitro assembly. Protein Expr. Purif. 4, 503-511.
    • (1993) Protein Expr. Purif , vol.4 , pp. 503-511
    • Borukhov, S.1    Goldfarb, A.2
  • 4
    • 61749088917 scopus 로고    scopus 로고
    • Bacterial chromosome-encoded small regulatory RNAs
    • Brantl, S. (2009). Bacterial chromosome-encoded small regulatory RNAs. Future Microbiol. 4, 85-103.
    • (2009) Future Microbiol , vol.4 , pp. 85-103
    • Brantl, S.1
  • 6
    • 0016748261 scopus 로고
    • A procedure for the rapid, large scale purification of E. coli DNA-dependent RNA poly-merase involving Polymin P precipitation and DNA cellulose chromatography
    • Burgess, R.R. and Jendrisak, J.J. (1975). A procedure for the rapid, large scale purification of E. coli DNA-dependent RNA poly-merase involving Polymin P precipitation and DNA cellulose chromatography. Biochemistry 14, 4636-4638.
    • (1975) Biochemistry , vol.14 , pp. 4636-4638
    • Burgess, R.R.1    Jendrisak, J.J.2
  • 7
    • 0019319452 scopus 로고
    • Cycling of ribonucleic acid polymerase to produce oligonucleotides during initiation in vitro at the lac UV5 promoter
    • Carpousis, A.J. and Gralla, J.D. (1980). Cycling of ribonucleic acid polymerase to produce oligonucleotides during initiation in vitro at the lac UV5 promoter. Biochemistry 19, 3245-3253.
    • (1980) Biochemistry , vol.19 , pp. 3245-3253
    • Carpousis, A.J.1    Gralla, J.D.2
  • 9
    • 34247860970 scopus 로고    scopus 로고
    • Studies on the function of the riboregulator 6S RNA from E. coli: RNA polymerase binding, inhibition of in vitro transcription and synthesis of RNA-directed de novo transcripts
    • Gildehaus, N., Neusser, T., Wurm, R., and Wagner, R. (2007). Studies on the function of the riboregulator 6S RNA from E. coli: RNA polymerase binding, inhibition of in vitro transcription and synthesis of RNA-directed de novo transcripts. Nucleic Acids Res. 35, 1885-1896.
    • (2007) Nucleic Acids Res , vol.35 , pp. 1885-1896
    • Gildehaus, N.1    Neusser, T.2    Wurm, R.3    Wagner, R.4
  • 10
    • 66149123741 scopus 로고    scopus 로고
    • Direct detection of abortive RNA transcripts in vivo
    • Goldman, S.R., Ebright, R.H., and Nickels, B.E. (2009). Direct detection of abortive RNA transcripts in vivo. Science 324, 927-928.
    • (2009) Science , vol.324 , pp. 927-928
    • Goldman, S.R.1    Ebright, R.H.2    Nickels, B.E.3
  • 11
    • 0017684749 scopus 로고
    • A simple procedure for resolution of E. coli RNA polymerase holoenzyme from core polymerase
    • Gonzales, N., Wiggs, J., and Chamberlin, M.J. (1977). A simple procedure for resolution of E. coli RNA polymerase holoenzyme from core polymerase. Arch. Biochem. Biophys. 182, 404-408.
    • (1977) Arch. Biochem. Biophys , vol.182 , pp. 404-408
    • Gonzales, N.1    Wiggs, J.2    Chamberlin, M.J.3
  • 12
    • 0021759146 scopus 로고
    • The effect of tRNA binding on the structure of 5S RNA in E. coli. A chemical modification study
    • Göringer, H.U., Bertram, S., and Wagner, R. (1984). The effect of tRNA binding on the structure of 5S RNA in E. coli. A chemical modification study. J. Biol. Chem. 259, 491-496.
    • (1984) J. Biol. Chem , vol.259 , pp. 491-496
    • Göringer, H.U.1    Bertram, S.2    Wagner, R.3
  • 13
    • 0029820872 scopus 로고    scopus 로고
    • rRNA transcription and growth rate-dependent regulation of ribosome synthesis in Escherichia coli
    • Gourse, R.L., Gaal, T., Bartlett, M.S., Appleman, J.A., and Ross, W. (1996). rRNA transcription and growth rate-dependent regulation of ribosome synthesis in Escherichia coli. Annu. Rev. Microbiol. 50, 645-677.
    • (1996) Annu. Rev. Microbiol , vol.50 , pp. 645-677
    • Gourse, R.L.1    Gaal, T.2    Bartlett, M.S.3    Appleman, J.A.4    Ross, W.5
  • 14
    • 0026019420 scopus 로고
    • Identification of a subunit assembly domain in the a subunit of Escherichia coli RNA polymerase
    • Igarashi, K., Fujita, N., and Ishihama, A. (1991). Identification of a subunit assembly domain in the a subunit of Escherichia coli RNA polymerase. J. Mol. Biol. 218, 1-6.
    • (1991) J. Mol. Biol , vol.218 , pp. 1-6
    • Igarashi, K.1    Fujita, N.2    Ishihama, A.3
  • 16
    • 33846340147 scopus 로고    scopus 로고
    • An RNA transcriptional regulator templates its own regulatory RNA
    • Kugel, J.F. and Goodrich, J.A. (2007). An RNA transcriptional regulator templates its own regulatory RNA. Nat. Chem. Biol. 3, 89-90.
    • (2007) Nat. Chem. Biol , vol.3 , pp. 89-90
    • Kugel, J.F.1    Goodrich, J.A.2
  • 17
    • 0017843404 scopus 로고
    • Small stable RNAs from Escherichia coli: Evidence for the existence of new molecules and for a new ribonucleoprotein particle containing 6S RNA
    • Lee, S.Y., Bailey, S.C., and Apirion, D. (1978). Small stable RNAs from Escherichia coli: evidence for the existence of new molecules and for a new ribonucleoprotein particle containing 6S RNA. J. Bacteriol. 133, 1015-1023.
    • (1978) J. Bacteriol , vol.133 , pp. 1015-1023
    • Lee, S.Y.1    Bailey, S.C.2    Apirion, D.3
  • 18
    • 0028895026 scopus 로고
    • Effects of different growth conditions on the in vivo activity of the tandem Escherichia coli ribosomal RNA promoters P1 and P2
    • Liebig, B. and Wagner, R. (1995). Effects of different growth conditions on the in vivo activity of the tandem Escherichia coli ribosomal RNA promoters P1 and P2. Mol. Gen. Genet. 249, 328-335.
    • (1995) Mol. Gen. Genet , vol.249 , pp. 328-335
    • Liebig, B.1    Wagner, R.2
  • 20
    • 0041669435 scopus 로고    scopus 로고
    • Control of rRNA expression by small molecules is dynamic and nonredundant
    • Murray, H.D., Schneider, D.A., and Gourse, R.L. (2003). Control of rRNA expression by small molecules is dynamic and nonredundant. Mol. Cell 12, 125-134.
    • (2003) Mol. Cell , vol.12 , pp. 125-134
    • Murray, H.D.1    Schneider, D.A.2    Gourse, R.L.3
  • 21
    • 33746827367 scopus 로고    scopus 로고
    • The role of the largest RNA polymerase subunit lid element in preventing the formation of extended RNA-DNA hybrid
    • Naryshkina, T., Kuznedelov, K., and Severinov, K. (2006). The role of the largest RNA polymerase subunit lid element in preventing the formation of extended RNA-DNA hybrid. J. Mol. Biol. 361, 634-643.
    • (2006) J. Mol. Biol , vol.361 , pp. 634-643
    • Naryshkina, T.1    Kuznedelov, K.2    Severinov, K.3
  • 22
    • 40149091702 scopus 로고    scopus 로고
    • Studies on the expression of 6S RNA from E. coli: Involvement of regulators important for stress and growth adaptation
    • Neußer, T., Gildehaus, N., Wurm, R., and Wagner, R. (2008). Studies on the expression of 6S RNA from E. coli: involvement of regulators important for stress and growth adaptation. Biol. Chem. 389, 285-297.
    • (2008) Biol. Chem , vol.389 , pp. 285-297
    • Neußer, T.1    Gildehaus, N.2    Wurm, R.3    Wagner, R.4
  • 24
    • 3242807381 scopus 로고    scopus 로고
    • 6S RNA function enhances long-term cell survival
    • Trotochaud, A.E. and Wassarman, K.M. (2004). 6S RNA function enhances long-term cell survival. J. Bacteriol. 186, 4978-4985.
    • (2004) J. Bacteriol , vol.186 , pp. 4978-4985
    • Trotochaud, A.E.1    Wassarman, K.M.2
  • 25
    • 18344371528 scopus 로고    scopus 로고
    • A highly conserved 6S RNA structure is required for regulation of transcription
    • Trotochaud, A.E. and Wassarman, K.M. (2005). A highly conserved 6S RNA structure is required for regulation of transcription. Nat. Struct. Biol. 12, 313-319.
    • (2005) Nat. Struct. Biol , vol.12 , pp. 313-319
    • Trotochaud, A.E.1    Wassarman, K.M.2
  • 26
    • 33744774173 scopus 로고    scopus 로고
    • 6S RNA regulation of pspF transcription leads to altered cell survival at high pH
    • Trotochaud, A.E. and Wassarman, K.M. (2006). 6S RNA regulation of pspF transcription leads to altered cell survival at high pH. J. Bacteriol. 188, 3936-3943.
    • (2006) J. Bacteriol , vol.188 , pp. 3936-3943
    • Trotochaud, A.E.1    Wassarman, K.M.2
  • 28
    • 0028091275 scopus 로고
    • The regulation of ribosomal RNA synthesis and bacterial cell growth
    • Wagner, R. (1994). The regulation of ribosomal RNA synthesis and bacterial cell growth. Arch. Microbiol. 160, 100-109.
    • (1994) Arch. Microbiol , vol.160 , pp. 100-109
    • Wagner, R.1
  • 29
    • 34247163202 scopus 로고    scopus 로고
    • 6S RNA: A small RNA regulator of transcription
    • Wassarman, K.M. (2007). 6S RNA: a small RNA regulator of transcription. Curr. Opin. Microbiol. 10, 164-168.
    • (2007) Curr. Opin. Microbiol , vol.10 , pp. 164-168
    • Wassarman, K.M.1
  • 30
    • 0034625237 scopus 로고    scopus 로고
    • 6S RNA regulates E. coli RNA polymerase activity
    • Wassarman, K.M. and Storz, G. (2000). 6S RNA regulates E. coli RNA polymerase activity. Cell 101, 613-623.
    • (2000) Cell , vol.101 , pp. 613-623
    • Wassarman, K.M.1    Storz, G.2
  • 31
    • 33845450357 scopus 로고    scopus 로고
    • Synthesis-mediated release of a small RNA inhibitor of RNA polymerase
    • Wassarman, K.M. and Saecker, R.M. (2006). Synthesis-mediated release of a small RNA inhibitor of RNA polymerase. Science 314, 1601-1603.
    • (2006) Science , vol.314 , pp. 1601-1603
    • Wassarman, K.M.1    Saecker, R.M.2
  • 32
    • 60149089144 scopus 로고    scopus 로고
    • Regulatory RNAs in bacteria
    • Waters, L.S. and Storz, G. (2009). Regulatory RNAs in bacteria. Cell 136, 615-628.
    • (2009) Cell , vol.136 , pp. 615-628
    • Waters, L.S.1    Storz, G.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.