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Volumn 150, Issue 3, 2010, Pages 288-293

Selection of reference genes for gene expression studies in porcine skeletal muscle using SYBR green qPCR

Author keywords

GeNorm; NormFinder; QPCR; Reference genes; ROCK2; Skeletal muscle

Indexed keywords

GENORM; NORMFINDER; QPCR; REFERENCE GENES; ROCK2; SKELETAL MUSCLE;

EID: 78149468986     PISSN: 01681656     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jbiotec.2010.09.949     Document Type: Article
Times cited : (46)

References (44)
  • 1
    • 3442876969 scopus 로고    scopus 로고
    • Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets
    • Andersen C.L., Jensen J.L., Orntoft T.F. Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Cancer Res. 2004, 64:5245-5250.
    • (2004) Cancer Res. , vol.64 , pp. 5245-5250
    • Andersen, C.L.1    Jensen, J.L.2    Orntoft, T.F.3
  • 2
    • 0001624747 scopus 로고
    • Tissue development in Meishan pigs: muscle and fat development and metabolism and growth hormone regulation by somatotropic hormone Symposium sur le porc chinois
    • INRA, Toulouse, France
    • Bonneau M., Mourot J., Noblet J., Lefaucheur L., Bidanel J.P. Tissue development in Meishan pigs: muscle and fat development and metabolism and growth hormone regulation by somatotropic hormone Symposium sur le porc chinois. Chinese Pig Symposium 1990, INRA, Toulouse, France.
    • (1990) Chinese Pig Symposium
    • Bonneau, M.1    Mourot, J.2    Noblet, J.3    Lefaucheur, L.4    Bidanel, J.P.5
  • 3
    • 33747175374 scopus 로고    scopus 로고
    • Development and evaluation of canine reference genes for accurate quantification of gene expression
    • Brinkhof B., Spee B., Rothuizen J., Penning L.C. Development and evaluation of canine reference genes for accurate quantification of gene expression. Anal. Biochem. 2006, 356:36-43.
    • (2006) Anal. Biochem. , vol.356 , pp. 36-43
    • Brinkhof, B.1    Spee, B.2    Rothuizen, J.3    Penning, L.C.4
  • 4
    • 39049152539 scopus 로고    scopus 로고
    • Relative quantification of mRNA: comparison of methods currently used for real-time PCR data analysis
    • Cikos S., Bukovska A., Koppel J. Relative quantification of mRNA: comparison of methods currently used for real-time PCR data analysis. BMC Mol. Biol. 2007, 8:113.
    • (2007) BMC Mol. Biol. , vol.8 , pp. 113
    • Cikos, S.1    Bukovska, A.2    Koppel, J.3
  • 5
    • 33750277449 scopus 로고    scopus 로고
    • Development of a new set of reference genes for normalization of real-time RT-PCR data of porcine backfat and Longissimus dorsi muscle, and evaluation with PPARGC1A
    • Erkens T., Van Poucke M., Vandesompele J., Goossens K., Van Zeveren A., Peelman L.J. Development of a new set of reference genes for normalization of real-time RT-PCR data of porcine backfat and Longissimus dorsi muscle, and evaluation with PPARGC1A. BMC Biotechnol. 2006, 6:8.
    • (2006) BMC Biotechnol. , vol.6 , pp. 8
    • Erkens, T.1    Van Poucke, M.2    Vandesompele, J.3    Goossens, K.4    Van Zeveren, A.5    Peelman, L.J.6
  • 6
    • 0037069690 scopus 로고    scopus 로고
    • Rho GTPases in cell biology
    • Etienne-Manneville S., Hall A. Rho GTPases in cell biology. Nature 2002, 420:629-635.
    • (2002) Nature , vol.420 , pp. 629-635
    • Etienne-Manneville, S.1    Hall, A.2
  • 7
    • 14644429677 scopus 로고    scopus 로고
    • Reliable transcript quantification by real-time reverse transcriptase-polymerase chain reaction in primary neuroblastoma using normalization to averaged expression levels of the control genes HPRT1 and SDHA
    • Fischer M., Skowron M., Berthold F. Reliable transcript quantification by real-time reverse transcriptase-polymerase chain reaction in primary neuroblastoma using normalization to averaged expression levels of the control genes HPRT1 and SDHA. J. Mol. Diagn. 2005, 7:89-96.
    • (2005) J. Mol. Diagn. , vol.7 , pp. 89-96
    • Fischer, M.1    Skowron, M.2    Berthold, F.3
  • 9
    • 0031614223 scopus 로고    scopus 로고
    • Regulation of hypoxanthine phosphoribosyltransferase, glyceraldehyde-3-phosphate dehydrogenase and beta-actin mRNA expression in porcine immune cells and tissues
    • Foss D.L., Baarsch M.J., Murtaugh M.P. Regulation of hypoxanthine phosphoribosyltransferase, glyceraldehyde-3-phosphate dehydrogenase and beta-actin mRNA expression in porcine immune cells and tissues. Anim. Biotechnol. 1998, 9:67-78.
    • (1998) Anim. Biotechnol. , vol.9 , pp. 67-78
    • Foss, D.L.1    Baarsch, M.J.2    Murtaugh, M.P.3
  • 10
    • 0035423813 scopus 로고    scopus 로고
    • Ribosomal 18S RNA prevails over glyceraldehyde-3-phosphate dehydrogenase and beta-actin genes as internal standard for quantitative comparison of mRNA levels in invasive and noninvasive human melanoma cell subpopulations
    • Goidin D., Mamessier A., Staquet M.-J., Schmitt D., Berthier-Vergnes O. Ribosomal 18S RNA prevails over glyceraldehyde-3-phosphate dehydrogenase and beta-actin genes as internal standard for quantitative comparison of mRNA levels in invasive and noninvasive human melanoma cell subpopulations. Anal. Biochem. 2001, 295:17-21.
    • (2001) Anal. Biochem. , vol.295 , pp. 17-21
    • Goidin, D.1    Mamessier, A.2    Staquet, M.-J.3    Schmitt, D.4    Berthier-Vergnes, O.5
  • 12
    • 45449087921 scopus 로고    scopus 로고
    • QBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data
    • Hellemans J., Mortier G., De Paepe A., Speleman F., Vandesompele J. qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data. Genome Biol. 2007, 8:R19.
    • (2007) Genome Biol. , vol.8
    • Hellemans, J.1    Mortier, G.2    De Paepe, A.3    Speleman, F.4    Vandesompele, J.5
  • 13
    • 0035650542 scopus 로고    scopus 로고
    • Prostanoid receptor gene expression profile in human trabecular meshwork: a quantitative real-time PCR approach
    • Kamphuis W., Schneemann A., van Beek L.M., Smit A.B., Hoyng P.F., Koya E. Prostanoid receptor gene expression profile in human trabecular meshwork: a quantitative real-time PCR approach. Invest. Ophthalmol. Vis. Sci. 2001, 42:3209-3215.
    • (2001) Invest. Ophthalmol. Vis. Sci. , vol.42 , pp. 3209-3215
    • Kamphuis, W.1    Schneemann, A.2    van Beek, L.M.3    Smit, A.B.4    Hoyng, P.F.5    Koya, E.6
  • 14
    • 34250899284 scopus 로고    scopus 로고
    • Validation of reference genes for quantitative RT-PCR studies in porcine oocytes and preimplantation embryos
    • Kuijk E.W., du Puy L., van Tol H.T., Haagsman H.P., Colenbrander B., Roelen B.A. Validation of reference genes for quantitative RT-PCR studies in porcine oocytes and preimplantation embryos. BMC Dev. Biol. 2007, 7:58.
    • (2007) BMC Dev. Biol. , vol.7 , pp. 58
    • Kuijk, E.W.1    du Puy, L.2    van Tol, H.T.3    Haagsman, H.P.4    Colenbrander, B.5    Roelen, B.A.6
  • 16
    • 78149464201 scopus 로고    scopus 로고
    • Differential expression and principal component analysis of genes related to muscle growth and adipose deposition Chinese
    • Li M.-Z., Li X.-W., Zhu L., Teng X.-K., Xiao H.-S., Li Q., Chen L. Differential expression and principal component analysis of genes related to muscle growth and adipose deposition Chinese. J. Biochem. Mol. Biol. 2008, 9.
    • (2008) J. Biochem. Mol. Biol. , pp. 9
    • Li, M.-Z.1    Li, X.-W.2    Zhu, L.3    Teng, X.-K.4    Xiao, H.-S.5    Li, Q.6    Chen, L.7
  • 17
    • 25444441297 scopus 로고    scopus 로고
    • Evaluation of the suitability of six host genes as internal control in real-time RT-PCR assays in chicken embryo cell cultures infected with infectious bursal disease virus
    • Li Y.P., Bang D.D., Handberg K.J., Jorgensen P.H., Zhang M.F. Evaluation of the suitability of six host genes as internal control in real-time RT-PCR assays in chicken embryo cell cultures infected with infectious bursal disease virus. Vet. Microbiol. 2005, 110:155-165.
    • (2005) Vet. Microbiol. , vol.110 , pp. 155-165
    • Li, Y.P.1    Bang, D.D.2    Handberg, K.J.3    Jorgensen, P.H.4    Zhang, M.F.5
  • 18
    • 24644478044 scopus 로고    scopus 로고
    • Analysis of global mRNA expression in human skeletal muscle during recovery from endurance exercise
    • Mahoney D.J., Parise G., Melov S., Safdar A., Tarnopolsky M.A. Analysis of global mRNA expression in human skeletal muscle during recovery from endurance exercise. FASEB J. 2005, 19:1498-1500.
    • (2005) FASEB J. , vol.19 , pp. 1498-1500
    • Mahoney, D.J.1    Parise, G.2    Melov, S.3    Safdar, A.4    Tarnopolsky, M.A.5
  • 19
    • 0035003174 scopus 로고    scopus 로고
    • A novel method to compensate for different amplification efficiencies between patient DNA samples in quantitative real-time PCR
    • Meijerink J., Mandigers C., van de Locht L., Tonnissen E., Goodsaid F., Raemaekers J. A novel method to compensate for different amplification efficiencies between patient DNA samples in quantitative real-time PCR. J. Mol. Diagn. 2001, 3:55-61.
    • (2001) J. Mol. Diagn. , vol.3 , pp. 55-61
    • Meijerink, J.1    Mandigers, C.2    van de Locht, L.3    Tonnissen, E.4    Goodsaid, F.5    Raemaekers, J.6
  • 20
    • 33644750203 scopus 로고    scopus 로고
    • Effects of histone deacetylase inhibitor (HDACi); trichostatin-A (TSA) on the expression of housekeeping genes
    • Mogal A., Abdulkadir S.A. Effects of histone deacetylase inhibitor (HDACi); trichostatin-A (TSA) on the expression of housekeeping genes. Mol. Cell. Probes 2006, 20:81-86.
    • (2006) Mol. Cell. Probes , vol.20 , pp. 81-86
    • Mogal, A.1    Abdulkadir, S.A.2
  • 21
    • 34948893564 scopus 로고    scopus 로고
    • Selection of reference genes for gene expression studies in pig tissues using SYBR green qPCR
    • Nygard A.B., Jorgensen C.B., Cirera S., Fredholm M. Selection of reference genes for gene expression studies in pig tissues using SYBR green qPCR. BMC Mol. Biol. 2007, 8:6.
    • (2007) BMC Mol. Biol. , vol.8 , pp. 6
    • Nygard, A.B.1    Jorgensen, C.B.2    Cirera, S.3    Fredholm, M.4
  • 22
    • 33646002325 scopus 로고    scopus 로고
    • Identification and validation of suitable endogenous reference genes for gene expression studies of human bladder cancer
    • Ohl F., Jung M., Radonic A., Sachs M., Loening S.A., Jung K. Identification and validation of suitable endogenous reference genes for gene expression studies of human bladder cancer. J. Urol. 2006, 175:1915-1920.
    • (2006) J. Urol. , vol.175 , pp. 1915-1920
    • Ohl, F.1    Jung, M.2    Radonic, A.3    Sachs, M.4    Loening, S.A.5    Jung, K.6
  • 23
    • 28344455318 scopus 로고    scopus 로고
    • Evaluation of potential reference genes in real-time RT-PCR studies of Atlantic salmon
    • Olsvik P.A., Lie K.K., Jordal A.E.O., Nilsen T.O., Hordvik I. Evaluation of potential reference genes in real-time RT-PCR studies of Atlantic salmon. BMC Mol. Biol. 2005, 6:9.
    • (2005) BMC Mol. Biol. , vol.6 , pp. 9
    • Olsvik, P.A.1    Lie, K.K.2    Jordal, A.E.O.3    Nilsen, T.O.4    Hordvik, I.5
  • 27
    • 53349108354 scopus 로고    scopus 로고
    • Evaluation of suitable reference genes for gene expression studies in bovine muscular tissue
    • Perez R., Tupac-Yupanqui I., Dunner S. Evaluation of suitable reference genes for gene expression studies in bovine muscular tissue. BMC Mol. Biol. 2008, 9:79.
    • (2008) BMC Mol. Biol. , vol.9 , pp. 79
    • Perez, R.1    Tupac-Yupanqui, I.2    Dunner, S.3
  • 28
    • 0037435395 scopus 로고    scopus 로고
    • Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data
    • Ramakers C., Ruijter J.M., Deprez R.H.L., Moorman A.F.M. Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data. Neurosci. Lett. 2003, 339:62-66.
    • (2003) Neurosci. Lett. , vol.339 , pp. 62-66
    • Ramakers, C.1    Ruijter, J.M.2    Deprez, R.H.L.3    Moorman, A.F.M.4
  • 29
    • 1842787909 scopus 로고    scopus 로고
    • Porcine genomics delivers new tools and results: this little piggy did more than just go to market
    • Rothschild M.F. Porcine genomics delivers new tools and results: this little piggy did more than just go to market. Genet. Res. 2004, 83:1-6.
    • (2004) Genet. Res. , vol.83 , pp. 1-6
    • Rothschild, M.F.1
  • 30
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • Rozen S., Skaletsky H. Primer3 on the WWW for general users and for biologist programmers. Methods Mol. Biol. 2000, 132:365-386.
    • (2000) Methods Mol. Biol. , vol.132 , pp. 365-386
    • Rozen, S.1    Skaletsky, H.2
  • 32
    • 0034694128 scopus 로고    scopus 로고
    • Effect of experimental treatment on housekeeping gene expression: Validation by real-time, quantitative RT-PCR
    • Schmittgen T.D., Zakrajsek B.A. Effect of experimental treatment on housekeeping gene expression: Validation by real-time, quantitative RT-PCR. J. Biochem. Biophys. Methods 2000, 46:69-81.
    • (2000) J. Biochem. Biophys. Methods , vol.46 , pp. 69-81
    • Schmittgen, T.D.1    Zakrajsek, B.A.2
  • 34
    • 33750034442 scopus 로고    scopus 로고
    • Selection of reference genes for quantitative RT-PCR studies in striped dolphin (Stenella coeruleoalba) skin biopsies
    • Spinsanti G., Panti C., Lazzeri E., Marsili L., Casini S., Frati F., Fossi C.M. Selection of reference genes for quantitative RT-PCR studies in striped dolphin (Stenella coeruleoalba) skin biopsies. BMC Mol. Biol. 2006, 7:11.
    • (2006) BMC Mol. Biol. , vol.7 , pp. 11
    • Spinsanti, G.1    Panti, C.2    Lazzeri, E.3    Marsili, L.4    Casini, S.5    Frati, F.6    Fossi, C.M.7
  • 37
    • 38249025175 scopus 로고
    • Eating quality of meat from European×Chinese crossbred pigs
    • Touraille C., Monin G., Legault C. Eating quality of meat from European×Chinese crossbred pigs. Meat Sci. 1989, 10.
    • (1989) Meat Sci. , pp. 10
    • Touraille, C.1    Monin, G.2    Legault, C.3
  • 39
    • 0037109753 scopus 로고    scopus 로고
    • Quantitative real-time reverse transcription polymerase chain reaction: normalization to rRNA or single housekeeping genes is inappropriate for human tissue biopsies
    • Tricarico C., Pinzani P., Bianchi S., Paglierani M., Distante V., Pazzagli M., Bustin S.A., Orlando C. Quantitative real-time reverse transcription polymerase chain reaction: normalization to rRNA or single housekeeping genes is inappropriate for human tissue biopsies. Anal. Biochem. 2002, 309:293-300.
    • (2002) Anal. Biochem. , vol.309 , pp. 293-300
    • Tricarico, C.1    Pinzani, P.2    Bianchi, S.3    Paglierani, M.4    Distante, V.5    Pazzagli, M.6    Bustin, S.A.7    Orlando, C.8
  • 40
    • 0037129827 scopus 로고    scopus 로고
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
    • RESEARCH0034
    • Vandesompele J., De Preter K., Pattyn F., Poppe B., Van Roy N., De Paepe A., Speleman F. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol. 2002, RESEARCH0034.
    • (2002) Genome Biol.
    • Vandesompele, J.1    De Preter, K.2    Pattyn, F.3    Poppe, B.4    Van Roy, N.5    De Paepe, A.6    Speleman, F.7
  • 44
    • 26444617222 scopus 로고    scopus 로고
    • Selection of reference genes for gene expression studies in human neutrophils by real-time PCR
    • Zhang X.Z., Ding L., Sandford A.J. Selection of reference genes for gene expression studies in human neutrophils by real-time PCR. BMC Mol. Biol. 2005, 6:7.
    • (2005) BMC Mol. Biol. , vol.6 , pp. 7
    • Zhang, X.Z.1    Ding, L.2    Sandford, A.J.3


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