Porcine genomics delivers new tools and results: This title piggy did more than just go to market

Genetical Research

Volumn 83, Issue 1, 2004, Pages 1-6

  Rothschild, Max F ^a  

^a IOWA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COAT PROTEIN; CYCLIC AMP DEPENDENT PROTEIN KINASE; MELANOCORTIN 4 RECEPTOR; MICROSATELLITE DNA; SOMATOMEDIN B;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ANIMAL GENETICS; BIOINFORMATICS; CHROMOSOME ANALYSIS; CLINICAL RESEARCH; DISEASE RESISTANCE; ECONOMIC ASPECT; FOOD INTAKE; FOOD QUALITY; GENE FUNCTION; GENE LOCUS; GENE MAPPING; GENE SEQUENCE; GENETIC IDENTIFICATION; GENETIC LINKAGE; GENETIC MARKER; GENOME ANALYSIS; GROWTH RATE; HYBRID CELL; LITTER SIZE; MEAT; MEAT INDUSTRY; NONHUMAN; PIG FARMING; QUANTITATIVE TRAIT LOCUS; REVIEW; SWINE;

AGRICULTURE; ANIMALS; CHROMOSOME MAPPING; COMPUTATIONAL BIOLOGY; GENOMICS; MEAT; QUANTITATIVE TRAIT LOCI; SUS SCROFA;

SUIDAE; SUS SCROFA;

EID: 1842787909     PISSN: 00166723     EISSN: None     Source Type: Journal    
DOI: 10.1017/S0016672303006621     Document Type: Review

References (39)

1. Archibald, A. L., Brown, J. F., Couperwhite, S., McQueen, H. A., Nicholson, D., Haley, C. S., Coppieters, W., Van de Weghe, A., Stratil, A., Winterø, A. K., Fredholm, M., Larsen, N. J., Nielsen, V. H., Milan, D., Woloszyn, N., Robic, A., Dalens, M., Riquet, J., Gellin, J., Caritez, J. C., Hue, D., Burgaud, G., Ollivier, L., Bidanel, J. P., Vaiman, M., Renard, C., Geldermann, H., Davoli, R., Ruyter, D., Versteger, E. J. M., Groenen, M. A. M., Davies, W., Høyheim, B., Keiserud, A., Andersson, L., Ellegren, H., Johansson, M., Marklund, L., Miller, J. R., Dear, D. V., Signer, E., Jeffreys, A. J., Moran, C., Le Tissier, P., Rothschild, M. F., Tuggle, C. K., Vaske, D., Helm, J., Liu, H. C., Rahman, A., Yu, T. P., Larson, R. G. & Schmitz, C. B. (1995). The PiGMaP consortium linkage map of the pig (Sus scrofa). Mammalian Genome 6, 157-175.
2. Archibald, A. & Law, A. (2003). Informatics for pig genome research. Proceedings of Plant and Animal Genome XI meetings. San Diego, CA. http://www.intl-pag.org/11/abstracts/W52_W329_XI.html
3. Bidanel, J. P. & Rothschild, M. F. (2002). Current Status of Quantitative Trait Locus Mapping in Pigs. Pig News and Information 23, 39N-53N.
4. Caetano, A. R., Johnson, R. K. & Pomp, D. (2002). RNA expression profiling of ovarian follicle development on swine lines selected for increased ovulation rate. Communication Number 08-07. Proceedings 7th World Congress on Genetics Applied to Livestock Production, August 19-23. Montpellier, France.
5. Caetano, A. R., Johnson, R. K. & Pomp, D. (2003). Using cDNA microarrays to study ovarian follicle development in pigs selected for increased ovulation rate. Proceedings of the Plant and Animal Genome XI Meetings. San Diego, CA. http://www.intl-pag.org/11/abstracts/W52_W328_XI.html
6. Cirera, S., Jørgensen, C. B., Sawera, M., Raudsepp, T., Chowdhary, B. P. & Fredholm, M. (2003). Comparative mapping in the pig: localization of 214 expressed sequence tags. Mammalian Genome 14, 405-426.
7. Ciobanu, D. C., Bastiaansen, J., Malek, M., Helm, J., Woollard, J., Plastow, G. S. & Rothschild, M. F. (2001). Evidence for new alleles in the protein kinase AMP-activated, subunit gene associated with low glycogen content in pig skeletal muscle and improved meat quality. Genetics 159, 1151-1162.
8. Ciobanu, D. C., Bastiaansen, J., Lonergan, S. M., Thomsen, H., Dekkers, J. C. M., Plastow, G. S. & Rothschild, M. F. (2004). New alleles in calpastatin gene are associated with meat quality traits in pigs. Journal of Animal Science (in press).
9. Davoli, R., Fontanesi, L., Zambonelli, P., Bigi, D., Gellin, J., Yerle, M., Milc, J., Braglia, S., Cenci, V., Cagnazzo, M. & Russo, V. (2002). Isolation of porcine expressed sequence tags for the construction of a first genomic transcript map of the skeletal muscle in pig. Animal Genetics 33, 3-18.
10. Dawson, H., Nishi, S., Beshah, E., Solano-Agular, G., Zarlenga, D., Urban, J. F. & Lunney, J. (2003). Use of real-time assays of immune gene expression to assess the genetic basis of disease resistance. Proceedings of the Plant and Animal Genome XI Meetings. San Diego, CA. http://www.intl-pag.org/11/abstracts/W52_W330_XI.html
11. De Koning, D. J., Rattink, A. P., Harlizius, B., van Arendonk, J. A. M., Brascamp, E. W. & Groenen, M. A. M. (2000). Genome-wide scan for body composition in pigs reveals important role of imprinting. Proceedings of the National Academy of Sciences of the USA 97, 7947-7950.
12. Desautes, C., Bidanelt, J. P., Milant, D., Iannuccelli, N., Amigues, Y., Bourgeois, F., Caritez, J. C., Renard, C., Chevalet, C. & Mormede, P. (2002). Genetic linkage mapping of quantitative trait loci for behavioral and neuroendocrine stress response traits in pigs. Journal of Animal Science 80, 2276-2285.
13. Fahrenkrug, S. C., Smith, T. P., Freking, B.A., Cho, J., White, J., Vallet, J., Wise, T., Rohrer, G., Pertea, G., Sultana, R., Quackenbush, J. & Keele, J. W. (2002). Porcincgene discovery by normalized cDNA-library sequencing and EST cluster assembly. Mammalian Genome 13, 475-478.
14. Georges, M., Andersson, G., Braunschweig, M., Buys, N., Collette, C., Moreau, L., Nezer, C., Nguyen, M., Van Laere, A. S. & Andersson, L. (2003). Geneticdissection of an imprinted QTL mapping to prosimal SSC2. Proceedings of the Plant and Animal Genome XI Meetings. San Diego, CA. http://www.intl-pag.org/11/abstracts/W52_W327_XI.html
15. Gladney, C. D., Bertani, G. R., Johnson, R. K. & Pomp, D. (2004). Evaluation of gene expression in pigs selected for enhanced reproduction using differential display PCR and microarray. I. Ovarian Follicles. Journal of Animal Science 82, 17-31.
16. Goureau, A., Yerle, M., Schmitz, A., Riquet, J., Milan, D., Pinton, P., Frelat, G. & Gellin, J. (1996). Human and porcine correspondence of chromosome segments using bidirectional chromosome painting. Genomics 36, 252-262.
17. Hawken, R. J., Murtaugh, J. & Flickinger, G. H. (1999). A first-generation porcine whole-genome radiation hybrid map. Mammalian Genome 10, 824-830.
18. Jørgensen, C. B., Cirera, S., Anderson, S. I., Archibald, A. L., Raudsepp, T., Chowdhary, B., Edfors-Lilja, I., Andersson, L. & Fredholm, M. (2003). Linkage and comparative mapping of the locus controlling susceptibility towards E. coli F4ab/ac diarrhoea in pigs. Cytogenetics and Genome Research 102 (in press).
19. Kim, K. S., Larsen, N., Short, T., Plastow, G. & Rothschild, M. F. (2000). A missense variant of the melanocortin 4 receptor (MC4R) gene is associated with fatness, growth and feed intake traits. Mammalian Genome 11, 131-135.
20. Lahbib-Mansais, Y., Tosser-Klopp, G., Leroux, S., Cabau, C., Karsenty, E., Milan, D., Barillot, E., Yerle, M., Hatey, F. & Gellin, J. (2003). Contribution to high resolution mapping in pigs with 101 type 1 markers and progress in comparative map between humans and pigs. Mammalian Genome 14, 275-288.
21. Moody, D. E., Zou, Z. & McIntyre, L. (2002). Cross-species hybridisation of pig RNA to human nylon microarrays. BMC Genomics 3, 27-35.
22. Nobis, W. P. & Coussens, P. M. (2003). Development of porcine brain EST and cDNA library and microarray resources. Proceedings of the Plant and Animal Genome XI Meetings. San Diego, CA. http://www.intl-pag.org,/11/abstracts/P7a_P749_XI.html
23. Okomo-Adhiambo, M. A., Beattie, C. W. & Rink, A. (2003). Relative quantification of the differential expression of apoptosis genes in an in vitro porcine Toxoplasma gondii infection using real-time RTPCR. Proceedings of the Plant and Animal Genome MI Meetings. San Diego, CA. http://www.intl-pag.org/11/abstracts/P7c_P840-XI.html
24. Rink, A., Santschi, E. M. & Beattie, C. W. (2002a). Normalized cDNA libraries from a porcine model of orthopedic implant-associated infection. Mammalian Genome 13, 198-205.
25. Rink, A., Santschi, E. M., Eycr, K. M., Roelofs, B., Hess, M., Godfrey, M., Karajusuf, E. K., Yerle, M., Milan, D. & Beattie, C. W. (2002b). A first-generation EST RH comparative map of the porcine and human genome. Mammalian Genome 13, 578-587.
26. Rohrer, G. A., Alexander, L. J., Hu, Z., Smith, T. P. L., Keele, J. W. & Beattie, CW. (1996). A comprehensive map of the porcine genome. Genome Research 6, 371-391.
27. Rohrer, G., Beever, J. E., Rothschild, M. F., Schook, L., Gibbs, R. & Weinstock G. (2003). Porcine Genomic Sequencing Initiative. http://www.genome.iastate.edu/newsletter/PigWhitePaper.html
28. Rothschild, M. F. & Ruvinsky, A. (1998). Genetics of the Pig. CABI Press. 622 Oxon, UK.
29. Rothschild, M. F. & Soller, M. (1997). Candidate gene analysis to detect traits of economic importance in domestic livestock. Prohe 8, 13-21.
30. Rothschild, M. F., Spike, P. L., Tuggle, C. K. & Christian, L. L. (1994). Coordination of U.S. pig gene mapping efforts. Journal of Animal Science 72 (Suppl. 1).
31. Tumbleson, M. E. & Schook, L. (1996). Advances in Biomedical Research. Plenum Press, New York.
32. Tuggle, C. K., Green, J. A., Fitzsimmons, C., Woods, R., Prather, R. S., Malchenko, S., Soares, M. B., Kucaba, T., Crouch, K., Smith, C., Tack, D., Robinson, N., O'Leary, B., Scheetz, T., Casavant, T., Pomp, D., Edeal, J. B., Zhang, Y., Rothschild, M. F., Garwood, K. & Beavis, W. (2003). EST-Based Gene Discovery in Pig: Virtual Expression Patterns and Comparative Mapping to Human. Mammalian Genome 14, 565-579.
33. Wilson, M. E., Fahrenkrug, S. C., Smith, T. P., Rohrer, G. A. & Ford, S. P. (2002). Differential expression of cyclooxygenase-2 around the time of elongation in the pig conceptus. Animal Reproduction Science 71, 229-237.
34. Winterø, A. K., Fredholm, M. & Davies, W. (1996). Evaluation and characterization of a porcine small intestine cDNA library: analysis of 839 clones. Mammalian Genome 7, 509-517.
35. Yao, J., Coussens, P. M., Saama, P., Suchyta, S. & Ernst, C. W. (2002). Generation of expressed sequence tags from a normalized porcine skeletal muscle cDNA library. Animal Biotechnology 13, 211-222.
36. Yerle, M., Echard, G., Robic, A., Mairal, A., Dubut-Fontana, C., Riquet, J., Pinton, P., Milan, D., Lahbib-Mansais, Y. & Gellin, J. (1996). A somatic cell hybrid panel for pig regional gene mapping characterized by molecular cytogenetics. Cytogenetics and Cell Genetics 73, 194-202.
37. Yerle, M., Pinton, P., Delcros, C., Arnal, N., Milan, D. & Robic, A. (2002). Generation and characterization of a 12000-rad radiation hybrid panel for fine mapping. Cytogenetics and Genome Research 97, 219-228.
38. Yerle, M., Pinton, P., Robic, A., Alfonso, A., Palvadeau, Y., Delcros, C., Hawken, R., Alexander, L., Beattie, C., Schook, L., Milan, D. & Gellin, J. (1998). Construction of a whole-genome radiation hybrid panel for high-resolution gene mapping in pigs. Cytogenetics and Cell Genetics 82, 182-188.
39. Zhao, S., Nettleton, D., Liu, W., Fitsimmons, C., Ernst, C., Raney, N. & Tuggle, C. K. (2003). Complementary DNA macroarray analyses of differential gene expression in porcine fetal and postnatal muscle. Journal of Animal Science 9, 2179-2188.