메뉴 건너뛰기




Volumn 7, Issue , 2006, Pages

Selection of reference genes for quantitative RT-PCR studies in striped dolphin (Stenella coeruleoalba) skin biopsies

Author keywords

[No Author keywords available]

Indexed keywords

BETA 2 MICROGLOBULIN; BIOLOGICAL MARKER; GLYCERALDEHYDE 3 PHOSPHATE DEHYDROGENASE; HYPOXANTHINE PHOSPHORIBOSYLTRANSFERASE; PHOSPHOGLYCERATE KINASE; RIBOSOME PROTEIN; SUCCINATE DEHYDROGENASE; TRANSFERRIN RECEPTOR; TYROSINE 3 MONOOXYGENASE; XENOBIOTIC AGENT;

EID: 33750034442     PISSN: 14712199     EISSN: 14712199     Source Type: Journal    
DOI: 10.1186/1471-2199-7-32     Document Type: Article
Times cited : (89)

References (42)
  • 1
    • 0037129827 scopus 로고    scopus 로고
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
    • RESEARCH0034
    • Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, De Paepe A, Speleman F: Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol 2002, 3(7):RESEARCH0034.
    • (2002) Genome Biol , vol.3 , Issue.7
    • Vandesompele, J.1    De Preter, K.2    Pattyn, F.3    Poppe, B.4    Van Roy, N.5    De Paepe, A.6    Speleman, F.7
  • 2
    • 0036278859 scopus 로고    scopus 로고
    • Gene quantification using real-time quantitative PCR: An emerging technology hits the mainstream
    • Ginzinger DG: Gene quantification using real-time quantitative PCR: an emerging technology hits the mainstream. Exp Hematol 2002, 30(6):503-512.
    • (2002) Exp Hematol , vol.30 , Issue.6 , pp. 503-512
    • Ginzinger, D.G.1
  • 3
    • 21344471138 scopus 로고    scopus 로고
    • Real-time RT-PCR normalisation; strategies and considerations
    • Huggett J, Dheda K, Bustin S, Zumla A: Real-time RT-PCR normalisation; strategies and considerations. Genes Immun 2005, 6(4):279-284.
    • (2005) Genes Immun , vol.6 , Issue.4 , pp. 279-284
    • Huggett, J.1    Dheda, K.2    Bustin, S.3    Zumla, A.4
  • 5
  • 6
    • 1842483281 scopus 로고    scopus 로고
    • Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper - Excel-based tool using pair-wise correlations
    • Pfaffl MW, Tichopad A, Prgomet C, Neuvians TP: Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper - Excel-based tool using pair-wise correlations. Biotechnol Lett 2004, 26(6):509-515.
    • (2004) Biotechnol Lett , vol.26 , Issue.6 , pp. 509-515
    • Pfaffl, M.W.1    Tichopad, A.2    Prgomet, C.3    Neuvians, T.P.4
  • 7
    • 27644563899 scopus 로고    scopus 로고
    • The implications of using an inappropriate reference gene for real-time reverse transcription PCR data normalization
    • Dheda K, Huggett JF, Chang JS, Kim LU, Bustin SA,Johnson MA, Rook GA, Zumla A: The implications of using an inappropriate reference gene for real-time reverse transcription PCR data normalization. Anal Biochem 2005, 344(1):141-143.
    • (2005) Anal Biochem , vol.344 , Issue.1 , pp. 141-143
    • Dheda, K.1    Huggett, J.F.2    Chang, J.S.3    Kim, L.U.4    Bustin, S.A.5    Johnson, M.A.6    Rook, G.A.7    Zumla, A.8
  • 10
    • 23644459677 scopus 로고    scopus 로고
    • Mechanical injury of cartilage explants causes specific time-dependent changes in chondrocyte gene expression
    • Lee JH, Fitzgerald JB, Dimicco MA, Grodzinsky AJ: Mechanical injury of cartilage explants causes specific time-dependent changes in chondrocyte gene expression. Arthritis Rheum 2005, 52(8):2386-2395.
    • (2005) Arthritis Rheum , vol.52 , Issue.8 , pp. 2386-2395
    • Lee, J.H.1    Fitzgerald, J.B.2    Dimicco, M.A.3    Grodzinsky, A.J.4
  • 13
    • 32944470943 scopus 로고    scopus 로고
    • Quantitative analysis of messenger RNA abundance for ribosomal protein L-15, cyclophilin-A, phosphoglycerokinase, beta-glucuronidase, glyceraldehyde 3-phosphate dehydrogenase, beta-actin, and histone H2A during bovine oocyte maturation and early embryogenesis in vitro
    • Bettegowda A, Patel OV, Ireland JJ, Smith GW: Quantitative analysis of messenger RNA abundance for ribosomal protein L-15, cyclophilin-A, phosphoglycerokinase, beta-glucuronidase, glyceraldehyde 3-phosphate dehydrogenase, beta-actin, and histone H2A during bovine oocyte maturation and early embryogenesis in vitro. Mol Reprod Dev 2006, 73(3):267-278.
    • (2006) Mol Reprod Dev , vol.73 , Issue.3 , pp. 267-278
    • Bettegowda, A.1    Patel, O.V.2    Ireland, J.J.3    Smith, G.W.4
  • 14
    • 33644958616 scopus 로고    scopus 로고
    • Generic normalization method for real-time PCR. Application for the analysis of the mannanase gene expressed in germinating tomato seed
    • Argyropoulos D, Psallida C, Spyropoulos CG: Generic normalization method for real-time PCR. Application for the analysis of the mannanase gene expressed in germinating tomato seed. Febs J 2006, 273(4):770-777.
    • (2006) Febs J , vol.273 , Issue.4 , pp. 770-777
    • Argyropoulos, D.1    Psallida, C.2    Spyropoulos, C.G.3
  • 15
    • 32444445851 scopus 로고    scopus 로고
    • Identification of valid housekeeping genes and antioxidant enzyme gene expression change in the aging rat liver
    • Chen J, Rider DA, Ruan R: Identification of valid housekeeping genes and antioxidant enzyme gene expression change in the aging rat liver. J Gerontol A Biol Sci Med Sci 2006, 61(1):20-27.
    • (2006) J Gerontol A Biol Sci Med Sci , vol.61 , Issue.1 , pp. 20-27
    • Chen, J.1    Rider, D.A.2    Ruan, R.3
  • 16
    • 23344442946 scopus 로고    scopus 로고
    • Evaluation of housekeeping genes in placental comparative expression studies
    • Meller M, Vadachkoria S, Luthy DA, Williams MA: Evaluation of housekeeping genes in placental comparative expression studies. Placenta 2005, 26(8-9):601-607.
    • (2005) Placenta , vol.26 , Issue.8-9 , pp. 601-607
    • Meller, M.1    Vadachkoria, S.2    Luthy, D.A.3    Williams, M.A.4
  • 17
    • 27144456802 scopus 로고    scopus 로고
    • Housekeeping gene selection for real-time RT-PCR normalization in potato during biotic and abiotic stress
    • Nicot N, Hausman JF, Hoffmann L, Evers D: Housekeeping gene selection for real-time RT-PCR normalization in potato during biotic and abiotic stress. J Exp Bot 2005, 56(421):2907-2914.
    • (2005) J Exp Bot , vol.56 , Issue.421 , pp. 2907-2914
    • Nicot, N.1    Hausman, J.F.2    Hoffmann, L.3    Evers, D.4
  • 18
    • 33644939541 scopus 로고    scopus 로고
    • Selection of ovine housekeeping genes for normalisation by real-time RT-PCR; analysis of PrP gene expression and genetic susceptibility to scrapie
    • Garcia-Crespo D, Juste RA, Hurtado A: Selection of ovine housekeeping genes for normalisation by real-time RT-PCR; analysis of PrP gene expression and genetic susceptibility to scrapie. BMC Vet Res 2005, 1:3.
    • (2005) BMC Vet Res , vol.1 , pp. 3
    • Garcia-Crespo, D.1    Juste, R.A.2    Hurtado, A.3
  • 19
    • 28344455318 scopus 로고    scopus 로고
    • Evaluation of potential reference genes in real-time RT-PCR studies of Atlantic salmon
    • Olsvik PA, Lie KK, Jordal AE, Nilsen TO, Hordvik I: Evaluation of potential reference genes in real-time RT-PCR studies of Atlantic salmon. BMC Mol Biol 2005, 6:21.
    • (2005) BMC Mol Biol , vol.6 , pp. 21
    • Olsvik, P.A.1    Lie, K.K.2    Jordal, A.E.3    Nilsen, T.O.4    Hordvik, I.5
  • 20
    • 3442876969 scopus 로고    scopus 로고
    • Normalization of real-time quantitative reverse transcription-PCR data: A model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets
    • Andersen CL, Jensen JL, Orntoft TF: Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Cancer Res 2004, 64(15):5245-5250.
    • (2004) Cancer Res , vol.64 , Issue.15 , pp. 5245-5250
    • Andersen, C.L.1    Jensen, J.L.2    Orntoft, T.F.3
  • 21
    • 5444258598 scopus 로고    scopus 로고
    • Validating internal controls for quantitative plant gene expression studies
    • Brunner AM, Yakovlev IA, Strauss SH: Validating internal controls for quantitative plant gene expression studies. BMC Plant Biol 2004, 4:14.
    • (2004) BMC Plant Biol , vol.4 , pp. 14
    • Brunner, A.M.1    Yakovlev, I.A.2    Strauss, S.H.3
  • 22
    • 0346024131 scopus 로고    scopus 로고
    • Selection of appropriate control genes to assess expression of tumor antigens using real-time RT-PCR
    • 84-6, 88
    • Aerts JL, Gonzales MI, Topalian SL: Selection of appropriate control genes to assess expression of tumor antigens using real-time RT-PCR. Biotechniques 2004, 36(1):84-6, 88, 90-1.
    • (2004) Biotechniques , vol.36 , Issue.1 , pp. 90-91
    • Aerts, J.L.1    Gonzales, M.I.2    Topalian, S.L.3
  • 24
    • 0037407797 scopus 로고    scopus 로고
    • Differential expression of IFN-alpha subtypes in human PBMC: Evaluation of novel real-time PCR assays
    • Loseke S, Grage-Griebenow E, Wagner A, Gehlhar K, Bufe A: Differential expression of IFN-alpha subtypes in human PBMC: evaluation of novel real-time PCR assays. J Immunol Methods 2003, 276(1-2):207-222.
    • (2003) J Immunol Methods , vol.276 , Issue.1-2 , pp. 207-222
    • Loseke, S.1    Grage-Griebenow, E.2    Wagner, A.3    Gehlhar, K.4    Bufe, A.5
  • 25
    • 0344531001 scopus 로고    scopus 로고
    • Normalization of reverse transcription quantitative-PCR with housekeeping genes in rice
    • Kim BR, Nam HY, Kim SU, Kim SI, Chang YJ: Normalization of reverse transcription quantitative-PCR with housekeeping genes in rice. Biotechnol Lett 2003, 25(21):1869-1872.
    • (2003) Biotechnol Lett , vol.25 , Issue.21 , pp. 1869-1872
    • Kim, B.R.1    Nam, H.Y.2    Kim, S.U.3    Kim, S.I.4    Chang, Y.J.5
  • 26
    • 0030618575 scopus 로고    scopus 로고
    • Age, growth and organochlorines (HCB, DDTs and PCBs) in Mediterranean striped dolphins Stenella coeruleoalba stranded in 1988-1994 on the coasts of Italy
    • Marsili L, Casini C, Marini L, Regoli A, Focardi S: Age, growth and organochlorines (HCB, DDTs and PCBs) in Mediterranean striped dolphins Stenella coeruleoalba stranded in 1988-1994 on the coasts of Italy. Marine Ecology Progress Series 1997, 151:273-282.
    • (1997) Marine Ecology Progress Series , vol.151 , pp. 273-282
    • Marsili, L.1    Casini, C.2    Marini, L.3    Regoli, A.4    Focardi, S.5
  • 27
    • 0042594558 scopus 로고    scopus 로고
    • The use of a non-lethal tool for evaluating toxicological hazard of organochlorine contaminants in Mediterranean cetaceans: New data 10 years after the first paper published in MPB
    • Fossi MC, Marsili L, Neri G, Natoli A, Politi E, Panigada S: The use of a non-lethal tool for evaluating toxicological hazard of organochlorine contaminants in Mediterranean cetaceans: new data 10 years after the first paper published in MPB. Mar Pollut Bull 2003, 46(8):972-982.
    • (2003) Mar Pollut Bull , vol.46 , Issue.8 , pp. 972-982
    • Fossi, M.C.1    Marsili, L.2    Neri, G.3    Natoli, A.4    Politi, E.5    Panigada, S.6
  • 28
    • 0033689436 scopus 로고    scopus 로고
    • Lipophilic contaminants in marine mammals: Review of the results of ten years work at the Department of Environmental Biology, Siena University (Italy)
    • Marsili L: Lipophilic contaminants in marine mammals: review of the results of ten years work at the Department of Environmental Biology, Siena University (Italy). International Journal of the Environment and Pollution 2000:416-452.
    • (2000) International Journal of the Environment and Pollution , pp. 416-452
    • Marsili, L.1
  • 29
    • 0033734944 scopus 로고    scopus 로고
    • Skin biopsy of Mediterranean cetaceans for the investigation of interspecies susceptibility to xenobiotic contaminants
    • Fossi MC, Marsili L, Neri G, Casini S, Bearzi G, Politi E, Zanardelli M, Panigada S: Skin biopsy of Mediterranean cetaceans for the investigation of interspecies susceptibility to xenobiotic contaminants. Mar Environ Res 2000, 50(1-5):517-521.
    • (2000) Mar Environ Res , vol.50 , Issue.1-5 , pp. 517-521
    • Fossi, M.C.1    Marsili, L.2    Neri, G.3    Casini, S.4    Bearzi, G.5    Politi, E.6    Zanardelli, M.7    Panigada, S.8
  • 31
    • 0033755945 scopus 로고    scopus 로고
    • Cytochrome P450 gene diversity and function in marine animals: Past, present, and future
    • Stegeman JJ: Cytochrome P450 gene diversity and function in marine animals: past, present, and future. Marine Environmental Research 2000, 50(1-5):61-62.
    • (2000) Marine Environmental Research , vol.50 , Issue.1-5 , pp. 61-62
    • Stegeman, J.J.1
  • 32
    • 0031812813 scopus 로고    scopus 로고
    • Trace elements in striped dolphins (Stenella coeruleoalba) from the western Mediterranean
    • Monaci F, Borrel A, Leozio C, Marsili L, Calzada N: Trace elements in striped dolphins (Stenella coeruleoalba) from the western Mediterranean. Environ Pollut 1998, 99(1):61-68.
    • (1998) Environ Pollut , vol.99 , Issue.1 , pp. 61-68
    • Monaci, F.1    Borrel, A.2    Leozio, C.3    Marsili, L.4    Calzada, N.5
  • 33
    • 84872269244 scopus 로고    scopus 로고
    • geNorm Software
    • geNorm Software [http://medgen.ugent.bel~jvdesomp/genorm/]. .
  • 34
    • 84872269831 scopus 로고    scopus 로고
    • NormFinder Software
    • NormFinder Software [http://www.mdl.dk/publication_snormfinder.htm].
  • 35
    • 84872277815 scopus 로고    scopus 로고
    • BestKeeper Software
    • BestKeeper Software [http://www.gene-quantification.de/bestkeeper.html]. .
  • 36
    • 0004023158 scopus 로고    scopus 로고
    • Unraveling DNA: Molecular Biology for the Laboratory
    • Upper Saddle River, NJ, Prentice-Hall
    • Winfrey MR, Rott MA, Wortman AT: Unraveling DNA: Molecular Biology for the Laboratory. Upper Saddle River, NJ, Prentice-Hall; 1997.
    • (1997)
    • Winfrey, M.R.1    Rott, M.A.2    Wortman, A.T.3
  • 37
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ: CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 1994, 22(22):4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , Issue.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 38
    • 84872261464 scopus 로고    scopus 로고
    • Clustal W
    • Clustal W [http://www.ebi.ac.uk/clustalw/].
  • 39
    • 84872270588 scopus 로고    scopus 로고
    • BioEdit. Biological Sequence Alignment Editor for Windows 95/98/NT/XP
    • BioEdit. Biological Sequence Alignment Editor for Windows 95/98/NT/XP. [http://www.mbio.ncsu.edu/BioEdit/bioedit.html]. .
  • 40
    • 84872274941 scopus 로고    scopus 로고
    • Basic Local Alignment Search Tool (BLAST)
    • Basic Local Alignment Search Tool (BLAST). [http://www.ncbi.nlm.nih.gov/ BLAST/]. .
  • 41
    • 0037795455 scopus 로고    scopus 로고
    • Large-scale comparison of intron positions in mammalian genes shows intron loss but no gain
    • Roy SW, Fedorov A, Gilbert W: Large-scale comparison of intron positions in mammalian genes shows intron loss but no gain. Proc Natl Acad Sci U S A 2003, 100(12):7158-7162.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , Issue.12 , pp. 7158-7162
    • Roy, S.W.1    Fedorov, A.2    Gilbert, W.3
  • 42
    • 21044447550 scopus 로고    scopus 로고
    • Analysis of evolution of exon-intron structure of eukaryotic genes
    • Rogozin IB, Sverdlov AV, Babenko VN, Koonin EV: Analysis of evolution of exon-intron structure of eukaryotic genes. Brief Bio-inform 2005, 6(2):118-134.
    • (2005) Brief Bioinform , vol.6 , Issue.2 , pp. 118-134
    • Rogozin, I.B.1    Sverdlov, A.V.2    Babenko, V.N.3    Koonin, E.V.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.