메뉴 건너뛰기




Volumn 88, Issue 3, 2010, Pages 771-779

Growth of wildtype and mutant E. coli strains in minimal media for optimal production of nucleic acids for preparing labeled nucleotides

Author keywords

Acetate; BL21; DL323; Escherichia coli; Formate; Glycerol; K10zwf; K12; Minimal media

Indexed keywords

ACETATE; BL21; DL323; FORMATE; K10ZWF; K12; MINIMAL MEDIAS;

EID: 78149361313     PISSN: 01757598     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00253-010-2813-y     Document Type: Article
Times cited : (23)

References (38)
  • 1
    • 0026744912 scopus 로고
    • Preparation of isotopically labeled ribonucleotides for multidimensional nmr spectroscopy of RNA
    • Batey RT, Inada M, Kujawinski E, Puglisi JD, Williamson JR (1992) Preparation of isotopically labeled ribonucleotides for multidimensional nmr spectroscopy of RNA. Nucleic Acids Res 20:4515-4523
    • (1992) Nucleic Acids Res. , vol.20 , pp. 4515-4523
    • Batey, R.T.1    Inada, M.2    Kujawinski, E.3    Puglisi, J.D.4    Williamson, J.R.5
  • 2
    • 0028803380 scopus 로고
    • Preparation of isotopically enriched RNAs for heteronuclear NMR
    • Batey RT, Battiste JL, Williamson JR (1995) Preparation of isotopically enriched RNAs for heteronuclear NMR. Methods Enzymol 261:300-322
    • (1995) Methods Enzymol. , vol.261 , pp. 300-322
    • Batey, R.T.1    Battiste, J.L.2    Williamson, J.R.3
  • 4
    • 0035856579 scopus 로고    scopus 로고
    • Metabolic flux response to phosphoglucose isomerase knock-out in Escherichia coli and impact of overexpression of the soluble transhydrogenase UdhA
    • Canonaco F, Hess TA, Heri S, Wang T, Szyperski T, Sauer U (2001) Metabolic flux response to phosphoglucose isomerase knock-out in Escherichia coli and impact of overexpression of the soluble transhydrogenase UdhA. FEMS Microbiol Lett 204:247-252
    • (2001) FEMS Microbiol. Lett. , vol.204 , pp. 247-252
    • Canonaco, F.1    Hess, T.A.2    Heri, S.3    Wang, T.4    Szyperski, T.5    Sauer, U.6
  • 6
    • 0031782955 scopus 로고    scopus 로고
    • Regulation of acetate metabolism by protein phosphorylation in enteric bacteria
    • Cozzone AJ (1998) Regulation of acetate metabolism by protein phosphorylation in enteric bacteria. Annu Rev Microbiol 52:127-164
    • (1998) Annu. Rev. Microbiol. , vol.52 , pp. 127-164
    • Cozzone, A.J.1
  • 7
    • 48649103008 scopus 로고    scopus 로고
    • Key labeling technologies to tackle sizeable problems in RNA structural biology
    • Dayie KT (2008) Key labeling technologies to tackle sizeable problems in RNA structural biology. Int J Mol Sci 9:1214-1240
    • (2008) Int. J. Mol. Sci. , vol.9 , pp. 1214-1240
    • Dayie, K.T.1
  • 8
    • 77951666009 scopus 로고    scopus 로고
    • Site-specific labeling of nucleotides for making RNA for high resolution NMR studies using an E. coli strain disabled in the oxidative pentose phosphate pathway
    • Dayie TK, Thakur CS (2010) Site-specific labeling of nucleotides for making RNA for high resolution NMR studies using an E. coli strain disabled in the oxidative pentose phosphate pathway. J Biomol NMR 47:19-31
    • (2010) J. Biomol. NMR , vol.47 , pp. 19-31
    • Dayie, T.K.1    Thakur, C.S.2
  • 10
    • 0037335931 scopus 로고    scopus 로고
    • Metabolic flux profiling of Escherichia coli mutants in central metabolism using GC-MS
    • Fischer E, Sauer U (2003) Metabolic flux profiling of Escherichia coli mutants in central metabolism using GC-MS. Eur J Biochem 270:880-891
    • (2003) Eur. J. Biochem. , vol.270 , pp. 880-891
    • Fischer, E.1    Sauer, U.2
  • 11
    • 0014272137 scopus 로고
    • Selection of Escherichia coli mutants lacking glucose-6-phosphate dehydrogenase or gluconate-6-phosphate dehydrogenase
    • Fraenkel DG (1968) Selection of Escherichia coli mutants lacking glucose-6-phosphate dehydrogenase or gluconate-6-phosphate dehydrogenase. J Bacteriol 95:1267-1271
    • (1968) J. Bacteriol. , vol.95 , pp. 1267-1271
    • Fraenkel, D.G.1
  • 12
    • 0018786580 scopus 로고
    • Properties of mutants of Escherichia coli lacking malic dehydrogenase and their revertants
    • Hansen EJ, Juni E (1979) Properties of mutants of Escherichia coli lacking malic dehydrogenase and their revertants. J Biol Chem 254:3570-3575
    • (1979) J. Biol. Chem. , vol.254 , pp. 3570-3575
    • Hansen, E.J.1    Juni, E.2
  • 13
    • 0028446564 scopus 로고
    • Carbon-proton scalar couplings in RNA-3D heteronuclear and 2D isotope-edited NMR of a C-13 labeled extra-stable hairpin
    • Hines JV, Landry SM, Varani G, Tinoco I (1994) Carbon-proton scalar couplings in RNA-3D heteronuclear and 2D isotope-edited NMR of a C-13 labeled extra-stable hairpin. J Am Chem Soc 116:5823-5831
    • (1994) J. Am. Chem. Soc. , vol.116 , pp. 5823-5831
    • Hines, J.V.1    Landry, S.M.2    Varani, G.3    Tinoco, I.4
  • 14
    • 85047669369 scopus 로고
    • Preparation of C-13-labeled ribonucleotides using acetate as an isotope source
    • Hoffman DW, Holland JA (1995) Preparation of C-13-labeled ribonucleotides using acetate as an isotope source. Nucleic Acids Res 23:3361-3362
    • (1995) Nucleic Acids Res. , vol.23 , pp. 3361-3362
    • Hoffman, D.W.1    Holland, J.A.2
  • 15
    • 38949194231 scopus 로고    scopus 로고
    • Metabolic labeling: Taking advantage of bacterial pathways to prepare spectroscopically useful isotope patterns in proteins and nucleic acids
    • Hoogstraten CG, Johnson JE (2008) Metabolic labeling: taking advantage of bacterial pathways to prepare spectroscopically useful isotope patterns in proteins and nucleic acids. Concepts Magn Reson Part A 32A:34-55
    • (2008) Concepts Magn Reson Part A , vol.32 A , pp. 34-55
    • Hoogstraten, C.G.1    Johnson, J.E.2
  • 17
    • 33747880448 scopus 로고    scopus 로고
    • Alternate-site isotopic labeling of ribonucleotides for NMR studies of ribose conformational dynamics in RNA
    • Johnson JE, Julien KR, Hoogstraten CG (2006) Alternate-site isotopic labeling of ribonucleotides for NMR studies of ribose conformational dynamics in RNA. J Biomol NMR 35:261-274
    • (2006) J. Biomol. NMR , vol.35 , pp. 261-274
    • Johnson, J.E.1    Julien, K.R.2    Hoogstraten, C.G.3
  • 18
    • 24744459633 scopus 로고    scopus 로고
    • NMR methods for studying the structure and dynamics of RNA
    • Latham MR, Brown DJ, McCallum SA, Pardi A (2005) NMR methods for studying the structure and dynamics of RNA. Chembiochem 6:1492-1505
    • (2005) Chembiochem , vol.6 , pp. 1492-1505
    • Latham, M.R.1    Brown, D.J.2    McCallum, S.A.3    Pardi, A.4
  • 19
    • 0020483334 scopus 로고
    • Preparative scale isolation of isotopically labeled amino acids
    • Lemaster DM, Richards FM (1982) Preparative scale isolation of isotopically labeled amino acids. Anal Biochem 122:238-247
    • (1982) Anal. Biochem. , vol.122 , pp. 238-247
    • Lemaster, D.M.1    Richards, F.M.2
  • 20
    • 0029905210 scopus 로고    scopus 로고
    • Dynamical mapping of E. coli thioredoxin via C-13 NMR relaxation analysis
    • Le Master DM, Kushlan DM (1996) Dynamical mapping of E. coli thioredoxin via C-13 NMR relaxation analysis. J Am Chem Soc 118:9255-9264
    • (1996) J. Am. Chem. Soc. , vol.118 , pp. 9255-9264
    • Le Master, D.M.1    Kushlan, D.M.2
  • 21
    • 18144396807 scopus 로고    scopus 로고
    • Global transcriptional programs reveal a carbon source foraging strategy by Escherichia coli
    • Liu M, Durfee T, Cabrera JE, Zhao K, Jin DJ, Blattner FR (2005) Global transcriptional programs reveal a carbon source foraging strategy by Escherichia coli. J Biol Chem 280:15921-15927
    • (2005) J. Biol. Chem. , vol.280 , pp. 15921-15927
    • Liu, M.1    Durfee, T.2    Cabrera, J.E.3    Zhao, K.4    Jin, D.J.5    Blattner, F.R.6
  • 22
    • 77149144527 scopus 로고    scopus 로고
    • Isotope labeling strategies for NMR studies of RNA
    • Lu K, Miyazaki Y, Summers MF (2010) Isotope labeling strategies for NMR studies of RNA. J Biomol NMR 46:113-125
    • (2010) J. Biomol. NMR , vol.46 , pp. 113-125
    • Lu, K.1    Miyazaki, Y.2    Summers, M.F.3
  • 23
    • 0024819449 scopus 로고
    • Synthesis of small RNAs using T7 RNA polymerase
    • Milligan JF, Uhlenbeck OC (1989) Synthesis of small RNAs using T7 RNA polymerase. Methods Enzymol 180:51-62
    • (1989) Methods Enzymol. , vol.180 , pp. 51-62
    • Milligan, J.F.1    Uhlenbeck, O.C.2
  • 24
    • 34548623183 scopus 로고    scopus 로고
    • Response of the central metabolism of Escherichia coli to modified expression of the gene encoding the glucose-6-phosphate dehydrogenase
    • Nicolas C, Kiefer P, Letisse F, Krömer J, Massou S, Soucaille P, Wittmann C, Lindley ND, Portais JC (2007) Response of the central metabolism of Escherichia coli to modified expression of the gene encoding the glucose-6-phosphate dehydrogenase. FEBS Lett 581:3771-3776
    • (2007) FEBS Lett. , vol.581 , pp. 3771-3776
    • Nicolas, C.1    Kiefer, P.2    Letisse, F.3    Krömer, J.4    Massou, S.5    Soucaille, P.6    Wittmann, C.7    Lindley, N.D.8    Portais, J.C.9
  • 25
    • 0035223403 scopus 로고    scopus 로고
    • 2H-labeled RNA oligonucleotides in nuclear magnetic resonance studies
    • 2H-labeled RNA oligonucleotides in nuclear magnetic resonance studies. Methods Enzymol 338:320-341
    • (2001) Methods Enzymol. , vol.338 , pp. 320-341
    • Nikonowicz, E.P.1
  • 26
    • 0034008457 scopus 로고    scopus 로고
    • Gene expression profiling by DNA microarrays and metabolic fluxes in Escherichia coli
    • Oh MK, Liao JC (2000) Gene expression profiling by DNA microarrays and metabolic fluxes in Escherichia coli. Biotechnol Prog 16:278-286
    • (2000) Biotechnol. Prog. , vol.16 , pp. 278-286
    • Oh, M.K.1    Liao, J.C.2
  • 27
    • 0037066717 scopus 로고    scopus 로고
    • Global expression profiling of acetate-grown Escherichia coli
    • Oh MK, Rohlin L, Kao KC, Liao JC (2002) Global expression profiling of acetate-grown Escherichia coli. J Biol Chem 277:13175-13183
    • (2002) J. Biol. Chem. , vol.277 , pp. 13175-13183
    • Oh, M.K.1    Rohlin, L.2    Kao, K.C.3    Liao, J.C.4
  • 28
    • 33845779493 scopus 로고    scopus 로고
    • Growth of E. coli BL21 in minimal media with different gluconeogenic carbon sources and salt contents
    • Paliy O, Gunasekera TS (2007) Growth of E. coli BL21 in minimal media with different gluconeogenic carbon sources and salt contents. Appl Microbiol Biotechnol 73:1169-1172
    • (2007) Appl. Microbiol. Biotechnol. , vol.73 , pp. 1169-1172
    • Paliy, O.1    Gunasekera, T.S.2
  • 29
    • 0037270065 scopus 로고    scopus 로고
    • Improved methods of cultivation and production of deuteriated proteins from E. coli strains grown on fully deuteriated minimal medium
    • Paliy O, Bloor D, Brockwell D, Gilbert P, Barber J (2003) Improved methods of cultivation and production of deuteriated proteins from E. coli strains grown on fully deuteriated minimal medium. J Appl Microbiol 94:580-586
    • (2003) J. Appl. Microbiol. , vol.94 , pp. 580-586
    • Paliy, O.1    Bloor, D.2    Brockwell, D.3    Gilbert, P.4    Barber, J.5
  • 30
    • 0037391699 scopus 로고    scopus 로고
    • Global metabolic regulation analysis for Escherichia coli K12 based on protein expression by 2-dimensional electrophoresis and enzyme activity measurement
    • Peng L, Shimizu K (2003) Global metabolic regulation analysis for Escherichia coli K12 based on protein expression by 2-dimensional electrophoresis and enzyme activity measurement. Appl Microbiol Biotechnol 61 (2):163-178
    • (2003) Appl. Microbiol. Biotechnol. , vol.61 , Issue.2 , pp. 163-178
    • Peng, L.1    Shimizu, K.2
  • 31
    • 34547659860 scopus 로고    scopus 로고
    • Recombinant RNA technology: The tRNA scaffold
    • Ponchon L, Dardel F (2007) Recombinant RNA technology: the tRNA scaffold. Nat Meth 4:571-576
    • (2007) Nat. Meth. , vol.4 , pp. 571-576
    • Ponchon, L.1    Dardel, F.2
  • 32
    • 66749152587 scopus 로고    scopus 로고
    • A generic protocol for the expression and purification of recombinant RNA in Escherichia coli using a tRNA scaffold
    • Ponchon L, Beauvais G, Nonin-Lecomte S, Dardel F (2009) A generic protocol for the expression and purification of recombinant RNA in Escherichia coli using a tRNA scaffold. Nat Protoc 4:947-959
    • (2009) Nat. Protoc. , vol.4 , pp. 947-959
    • Ponchon, L.1    Beauvais, G.2    Nonin-Lecomte, S.3    Dardel, F.4
  • 33
    • 0025737423 scopus 로고
    • Genetic and physical analyses of the growth rate-dependent regulation of Escherichia coli zwf expression
    • Rowley DL, Pease AJ, Wolf RE Jr (1991) Genetic and physical analyses of the growth rate-dependent regulation of Escherichia coli zwf expression. J Bacteriol 173:4660-4667
    • (1991) J. Bacteriol. , vol.173 , pp. 4660-4667
    • Rowley, D.L.1    Pease, A.J.2    Wolf Jr., R.E.3
  • 36
    • 14844294424 scopus 로고    scopus 로고
    • Protein production by auto-induction in high-density shaking cultures
    • Studier F (2005) Protein production by auto-induction in high-density shaking cultures. Protein Expr Purif 41:207-234
    • (2005) Protein Expr Purif , vol.41 , pp. 207-234
    • Studier, F.1
  • 37
    • 14844337509 scopus 로고    scopus 로고
    • Auto-induction medium for the production of U-N-15-and U-C-13, U-N-15-labeled proteins for NMR screening and structure determination
    • Tyler RC, Sreenath HK, Singh S, Aceti DJ, Binginan CA, Markley JL, Fox BG (2005) Auto-induction medium for the production of U-N-15-and U-C-13, U-N-15-labeled proteins for NMR screening and structure determination. Protein Expr Purif 40:268-278
    • (2005) Protein Expr Purif , vol.40 , pp. 268-278
    • Tyler, R.C.1    Sreenath, H.K.2    Singh, S.3    Aceti, D.J.4    Binginan, C.A.5    Markley, J.L.6    Fox, B.G.7
  • 38
    • 2342565059 scopus 로고    scopus 로고
    • Effect of zwf gene knockout on the metabolism of Escherichia coli grown on glucose or acetate
    • DOI 10.1016/j.ymben.2004.02.004
    • Zhao J, Baba T, Mori H, Shimizu K (2004) Effect of zwf gene knockout on the metabolism of Escherichia coli grown on glucose or acetate. Metab Eng 6:164-174 (Pubitemid 38601069)
    • (2004) Metabolic Engineering , vol.6 , Issue.2 , pp. 164-174
    • Zhao, J.1    Baba, T.2    Mori, H.3    Shimizu, K.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.