메뉴 건너뛰기




Volumn 46, Issue 1, 2010, Pages 113-125

Isotope labeling strategies for NMR studies of RNA

Author keywords

Enzymatic ligation; Isotope labeling; NMR; RNA structure

Indexed keywords

DEOXYRIBOZYME; POLYDEOXYRIBONUCLEOTIDE SYNTHASE; PURINE DERIVATIVE; PYRIMIDINE DERIVATIVE; RIBOSE; RNA; RNA LIGASE; RNA POLYMERASE;

EID: 77149144527     PISSN: 09252738     EISSN: 15735001     Source Type: Journal    
DOI: 10.1007/s10858-009-9375-2     Document Type: Review
Times cited : (123)

References (88)
  • 1
    • 0029852357 scopus 로고    scopus 로고
    • Structure of HIV-1 TAR RNA in the absence of ligands reveals a novel conformation of the trinucleotide bulge
    • F Aboul-ela J Karn G Varani 1996 Structure of HIV-1 TAR RNA in the absence of ligands reveals a novel conformation of the trinucleotide bulge Nucleic Acids Res 397 4 3981
    • (1996) Nucleic Acids Res , vol.397 , pp. 4-3981
    • Aboul-Ela, F.1    Karn, J.2    Varani, G.3
  • 2
    • 0031588542 scopus 로고    scopus 로고
    • Remarkable morphologlical variability of a common RNA folding motif: The GNRA tetraloop-receptor interaction
    • DOI 10.1006/jmbi.1996.0810
    • DL Abramovitz AM Pyle 1997 Remarkable morphological variability of a common RNA folding motif: the GNRA tetraloop-receptor interaction J Mol Biol 266 493 506 10.1006/jmbi.1996.0810 (Pubitemid 27117284)
    • (1997) Journal of Molecular Biology , vol.266 , Issue.3 , pp. 493-506
    • Abramovitz, D.L.1    Pyle, A.M.2
  • 3
    • 0031588925 scopus 로고    scopus 로고
    • How accurately and precisely can RNA structure be determined by NMR?
    • DOI 10.1006/jmbi.1996.0855
    • FH-T Allain G Varani 1997 How accurately and precisely can RNA structure be determined by NMR? J Mol Biol 267 338 351 10.1006/jmbi.1996.0855 (Pubitemid 27149845)
    • (1997) Journal of Molecular Biology , vol.267 , Issue.2 , pp. 338-351
    • Allain, F.H.-.T.1    Varani, G.2
  • 4
    • 0034716939 scopus 로고    scopus 로고
    • NMR structure of stem loop SL2 of the HIV-1 Y-RNA packaging signal reveals a novel A-U-A base triple platform
    • 10.1006/jmbi.2000.3710
    • GK Amarasinghe RN De Guzman RB Turner MF Summers 2000 NMR structure of stem loop SL2 of the HIV-1 Y-RNA packaging signal reveals a novel A-U-A base triple platform J Mol Biol 299 145 156 10.1006/jmbi.2000.3710
    • (2000) J Mol Biol , vol.299 , pp. 145-156
    • Amarasinghe, G.K.1    De Guzman, R.N.2    Turner, R.B.3    Summers, M.F.4
  • 6
    • 0035864172 scopus 로고    scopus 로고
    • RNA analysis by ion-pair reversed-phase high performance liquid chromatography
    • 10.1093/nar/29.2.e7
    • A Azarani KH Hecker 2001 RNA analysis by ion-pair reversed-phase high performance liquid chromatography Nucleic Acid Res 29 e7 10.1093/nar/29.2.e7
    • (2001) Nucleic Acid Res , vol.29 , pp. 7
    • Azarani, A.1    Hecker, K.H.2
  • 7
    • 0026687314 scopus 로고
    • Regioselective ligation of oligoribonucleotides using DNA splints
    • 10.1093/nar/20.16.4372
    • JD Bain C Switzer 1992 Regioselective ligation of oligoribonucleotides using DNA splints Nucleic Acids Res 20 4372 10.1093/nar/20.16.4372
    • (1992) Nucleic Acids Res , vol.20 , pp. 4372
    • Bain, J.D.1    Switzer, C.2
  • 8
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: Genomics, biogenesis, mechanism, and function
    • DOI 10.1016/S0092-8674(04)00045-5
    • DP Bartel 2004 MicroRNAs: genomics, biogenesis, mechanism, and function Cell 116 281 297 10.1016/S0092-8674(04)00045-5 (Pubitemid 38167318)
    • (2004) Cell , vol.116 , Issue.2 , pp. 281-297
    • Bartel, D.P.1
  • 9
    • 34447527363 scopus 로고    scopus 로고
    • Improved native affinity purification of RNA
    • DOI 10.1261/rna.528007
    • RT Batey JS Kieft 2007 Improved native affinity purification of RNA RNA 13 1384 1389 10.1261/rna.528007 (Pubitemid 47080482)
    • (2007) RNA , vol.13 , Issue.8 , pp. 1384-1389
    • Batey, R.T.1    Kieft, J.S.2
  • 10
    • 0026744912 scopus 로고
    • Preparation of isotopically labeled ribonucleotides for multidimensional NMR spectroscopy of RNA
    • 10.1093/nar/20.17.4515
    • RT Batey M Inada E Kujawinski JD Puglisi JR Williamson 1992 Preparation of isotopically labeled ribonucleotides for multidimensional NMR spectroscopy of RNA Nucleic Acids Res 20 4515 4523 10.1093/nar/20.17.4515
    • (1992) Nucleic Acids Res , vol.20 , pp. 4515-4523
    • Batey, R.T.1    Inada, M.2    Kujawinski, E.3    Puglisi, J.D.4    Williamson, J.R.5
  • 11
    • 0028803380 scopus 로고
    • Preparation of isotopically enriched RNAs for heteronuclear NMR
    • 10.1016/S0076-6879(95)61015-4
    • RT Batey JL Battiste JR Williamson 1995 Preparation of isotopically enriched RNAs for heteronuclear NMR Methods Enzymol 261 300 322 10.1016/S0076-6879(95)61015-4
    • (1995) Methods Enzymol , vol.261 , pp. 300-322
    • Batey, R.T.1    Battiste, J.L.2    Williamson, J.R.3
  • 12
    • 0015851235 scopus 로고
    • Isolation and characterization of an endonuclease from Escherichia coli specific for ribonucleic acid in ribonucleic acid-deoxyribonucleic acid hybrid structures
    • I Berkower J Leis JH 1973 Isolation and characterization of an endonuclease from Escherichia coli specific for ribonucleic acid in ribonucleic acid-deoxyribonucleic acid hybrid structures J Biol Chem 248 5914 5921
    • (1973) J Biol Chem , vol.248 , pp. 5914-5921
    • Berkower, I.1    Leis Jh, J.2
  • 13
    • 42249093677 scopus 로고    scopus 로고
    • Isolation of an active step I spliceosome and composition of its RNP core
    • DOI 10.1038/nature06842, PII NATURE06842
    • S Bessonov M Anokhina CL Will H Urlaub R Luhrmann 2008 Isolation of an active step I spliceosome and composition of its RNP core Nature 452 846 850 10.1038/nature06842 2008Natur.452..846B (Pubitemid 351550864)
    • (2008) Nature , vol.452 , Issue.7189 , pp. 846-850
    • Bessonov, S.1    Anokhina, M.2    Will, C.L.3    Urlaub, H.4    Luhrmann, R.5
  • 14
    • 0030939002 scopus 로고    scopus 로고
    • The structure, function and application of the hammerhead enzyme
    • 10.1111/j.1432-1033.1997.t01-3-00001.x
    • KR Birikh PA Heaton F Eckstein 1997 The structure, function and application of the hammerhead enzyme Eur J Biochem 245 1 16 10.1111/j.1432-1033. 1997.t01-3-00001.x
    • (1997) Eur J Biochem , vol.245 , pp. 1-16
    • Birikh, K.R.1    Heaton, P.A.2    Eckstein, F.3
  • 16
    • 33646137364 scopus 로고    scopus 로고
    • The diversity of RNA silencing pathways in plants
    • 10.1016/j.tig.2006.03.003
    • P Brodersen O Voinnet 2006 The diversity of RNA silencing pathways in plants Trends Genet 22 268 280 10.1016/j.tig.2006.03.003
    • (2006) Trends Genet , vol.22 , pp. 268-280
    • Brodersen, P.1    Voinnet, O.2
  • 17
    • 50649109849 scopus 로고    scopus 로고
    • Mechanistic characterization of the HDV genomic ribozyme: The cleavage site base pair plays a structural role in facilitating catalysis
    • 10.1261/rna.1140308
    • AL Cerrone-Szakal DM Chadalavada BL Goldend PC Bevilacqua 2009 Mechanistic characterization of the HDV genomic ribozyme: The cleavage site base pair plays a structural role in facilitating catalysis RNA 14 1746 1760 10.1261/rna.1140308
    • (2009) RNA , vol.14 , pp. 1746-1760
    • Cerrone-Szakal, A.L.1    Chadalavada, D.M.2    Goldend, B.L.3    Bevilacqua, P.C.4
  • 18
    • 18144435106 scopus 로고    scopus 로고
    • Rapid preparation of RNA samples for NMR spectroscopy and X-ray crystallography
    • 10.1093/nar/gnh081
    • HK Cheong E Hwang C Lee BS Choi C Cheong 2004 Rapid preparation of RNA samples for NMR spectroscopy and X-ray crystallography Nucleic Acids Res 32 e84 10.1093/nar/gnh081
    • (2004) Nucleic Acids Res , vol.32 , pp. 84
    • Cheong, H.K.1    Hwang, E.2    Lee, C.3    Choi, B.S.4    Cheong, C.5
  • 19
    • 0028248993 scopus 로고
    • 6xHis-Ni-NTA chromatography as a superior technique in recombinant protein expression/purification
    • J Crowe H Döbeli R Gentz E Hochuli D Stuber K Henco 1994 6xHis-Ni-NTA chromatography as a superior technique in recombinant protein expression/purification Methods Mol Biol 31 371 387
    • (1994) Methods Mol Biol , vol.31 , pp. 371-387
    • Crowe, J.1    Döbeli, H.2    Gentz, R.3    Hochuli, E.4    Stuber, D.5    Henco, K.6
  • 20
    • 0013008399 scopus 로고
    • Site of protonation of one-electron-reduced cytosine and its derivatives in aqueous methanol glasses
    • Cullis PM, Malone ME, Podomore ID, Symons MCR (1995) Site of protonation of one-electron-reduced cytosine and its derivatives in aqueous methanol glasses. J Phys Chem 99:9293-9298
    • (1995) J Phys Chem , vol.99 , pp. 9293-9298
    • Cullis, P.M.1    Malone, M.E.2    Podomore, I.D.3    Symons, M.C.R.4
  • 21
    • 1442286437 scopus 로고    scopus 로고
    • NMR structure of the 101-nucleotide core encapsidation signal of the moloney murine leukemia virus
    • DOI 10.1016/j.jmb.2004.01.037, PII S0022283604000932
    • V D'Souza A Dey D Habib MF Summers 2004 NMR structure of the 101 nucleotide core encapsidation signal of the Moloney Murine Leukemia Virus J Mol Biol 337 427 442 10.1016/j.jmb.2004.01.037 (Pubitemid 38293409)
    • (2004) Journal of Molecular Biology , vol.337 , Issue.2 , pp. 427-442
    • D'Souza, V.1    Dey, A.2    Habib, D.3    Summers, M.F.4
  • 22
    • 22444437410 scopus 로고    scopus 로고
    • RNA helical packing in solution: NMR structure of a 30 kDa GAAA tetraloop-receptor complex
    • DOI 10.1016/j.jmb.2005.05.069, PII S0022283605006479
    • JH Davis M Tonelli LG Scott L Jaeger JR Williamson SE Butcher 2005 RNA helical packing in solution: NMR structure of a 30 kDa GAAA tetraloop-receptor complex J Mol Biol 351 371 382 10.1016/j.jmb.2005.05.069 (Pubitemid 41007755)
    • (2005) Journal of Molecular Biology , vol.351 , Issue.2 , pp. 371-382
    • Davis, J.H.1    Tonelli, M.2    Scott, L.G.3    Jaeger, L.4    Williamson, J.R.5    Butcher, S.E.6
  • 23
    • 48649103008 scopus 로고    scopus 로고
    • Key labeling technologies to tackle sizeable problems in RNA structural biology
    • 10.3390/ijms9071214
    • KT Dayie 2008 Key labeling technologies to tackle sizeable problems in RNA structural biology Int J Mol Sci 9 1214 1240 10.3390/ijms9071214
    • (2008) Int J Mol Sci , vol.9 , pp. 1214-1240
    • Dayie, K.T.1
  • 24
    • 0037133957 scopus 로고    scopus 로고
    • Structure and function of the eukaryotic ribosome: The next frontier
    • DOI 10.1016/S0092-8674(02)00725-0
    • JA Doudna VL Rath 2002 Structure and function of the eukaryotic ribosome: the next frontier Cell 109 153 156 10.1016/S0092-8674(02)00725-0 (Pubitemid 34518254)
    • (2002) Cell , vol.109 , Issue.2 , pp. 153-156
    • Doudna, J.A.1    Rath, V.L.2
  • 25
    • 34347401399 scopus 로고    scopus 로고
    • Riboswitches: Small-molecule recognition by gene regulatory RNAs
    • DOI 10.1016/j.sbi.2007.05.004, PII S0959440X07000693, Nucleic acids / Sequences and topology
    • TE Edwards DJ Klein AR Ferre-D'Amare 2007 Riboswitches: small-molecule recognition by gene regulatory RNAs Curr Opin Struct Biol 17 273 279 10.1016/j.sbi.2007.05.004 (Pubitemid 47021358)
    • (2007) Current Opinion in Structural Biology , vol.17 , Issue.3 , pp. 273-279
    • Edwards, T.E.1    Klein, D.J.2    Ferre-D'Amare, A.R.3
  • 26
    • 0034073418 scopus 로고    scopus 로고
    • Transverse relaxation optimized triple-resonance NMR experiments for nucleic acids
    • DOI 10.1023/A:1008388400601
    • R Fiala J Czernek V Sklenar 2000 Transverse relaxation optimized triple-resonance NMR experiments for nucleic acids J Biomol NMR 16 291 302 10.1023/A:1008388400601 (Pubitemid 30262559)
    • (2000) Journal of Biomolecular NMR , vol.16 , Issue.4 , pp. 291-302
    • Fiala, R.1    Czernek, J.2    Sklenar, V.3
  • 27
    • 3042841923 scopus 로고    scopus 로고
    • 15N-labeling of proteins on a highly deuterated background
    • DOI 10.1023/B:JNMR.0000032523.00554.38
    • J Fiaux EB Bertelsen AL Horwich K Wuthrich 2004 Uniform and residue-specific 15 N-labeling of proteins on a highly deuterated background J Biomol NMR 29 289 297 10.1023/B:JNMR.0000032523.00554.38 (Pubitemid 38864827)
    • (2004) Journal of Biomolecular NMR , vol.29 , Issue.3 , pp. 289-297
    • Fiaux, J.1    Bertelsen, E.B.2    Horwich, A.L.3    Wuthrich, K.4
  • 28
    • 0035104772 scopus 로고    scopus 로고
    • Dynamic exchanges of RNA interactions leading to catalytic core formation in the U12-dependent spliceosome
    • DOI 10.1016/S1097-2765(01)00169-1
    • MJ Frilander JA Steitz 2001 Dynamic exchanges of RNA interactions leading to catalytic core formation in the U12-dependent spliceosome Mol Cell 7 217 226 10.1016/S1097-2765(01)00169-1 (Pubitemid 32162914)
    • (2001) Molecular Cell , vol.7 , Issue.1 , pp. 217-226
    • Frilander, M.J.1    Steitz, J.A.2
  • 29
    • 0003742452 scopus 로고
    • Chemical synthesis and transformations of nucleosides
    • Ts'o PO (ed) Academic Press, New York
    • Goodman L (1974) Chemical synthesis and transformations of nucleosides. In: Ts'o PO (ed) Basic principles in nucleic acid chemistry. Academic Press, New York, pp 170-208
    • (1974) Basic Principles in Nucleic Acid Chemistry , pp. 170-208
    • Goodman, L.1
  • 30
    • 0030044836 scopus 로고    scopus 로고
    • Evidence that sequence-independent binding of highly conserved U2 snRNP proteins upstream of the branch site is required for assembly of spliceosomal complex A
    • 10.1101/gad.10.2.233
    • O Gozani R Feld R Reed 1996 Evidence that sequence-independent binding of highly conserved U2 snRNP proteins upstream of the branch site is required for assembly of spliceosomal complex A Genes Dev 10 233 243 10.1101/gad.10.2.233
    • (1996) Genes Dev , vol.10 , pp. 233-243
    • Gozani, O.1    Feld, R.2    Reed, R.3
  • 32
    • 0021770476 scopus 로고
    • The complete nucleotide sequence of mouse 28S rRNA gene. Implications for the process of size increase of the large subunit rRNA in higher eukaryotes
    • 10.1093/nar/12.8.3563
    • N Hassouna B Michot JP Bachellerie 1984 The complete nucleotide sequence of mouse 28S rRNA gene. Implications for the process of size increase of the large subunit rRNA in higher eukaryotes Nucleic Acids Res 12 3563 3583 10.1093/nar/12.8.3563
    • (1984) Nucleic Acids Res , vol.12 , pp. 3563-3583
    • Hassouna, N.1    Michot, B.2    Bachellerie, J.P.3
  • 33
    • 0032916514 scopus 로고    scopus 로고
    • More mistakes by T7 RNA polymerase at the 5' ends of in vitro- transcribed RNAs [2]
    • DOI 10.1017/S1355838299982328
    • M Helm H Brulé R Giegé C Florentz 1999 More mistakes by T7 RNA polymerase at the 5' ends of in vitro-transcribed RNAs RNA 5 618 621 10.1017/S1355838299982328 (Pubitemid 29218451)
    • (1999) RNA , vol.5 , Issue.5 , pp. 618-621
    • Helm, M.1    Brule, H.2    Giege, R.3    Florentz, C.4
  • 34
    • 37549019376 scopus 로고    scopus 로고
    • Review: Recent advances in DNA catalysis. Biopolymers
    • 10.1002/bip.20813
    • C Höbartner SK Silverman 2007 Review: recent advances in DNA catalysis. Biopolymers Biopolymers 87 279 291 10.1002/bip.20813
    • (2007) Biopolymers , vol.87 , pp. 279-291
    • Höbartner, C.1    Silverman, S.K.2
  • 35
    • 0030661609 scopus 로고    scopus 로고
    • An efficient and economic site-specific deuteration strategy for NMR studies of homologous oligonucleotide repeat sequences
    • 10.1093/nar/25.23.4758
    • P Huang XY E LeProust X Gao 1997 An efficient and economic site-specific deuteration strategy for NMR studies of homologous oligonucleotide repeat sequences Nucleic Acid Res 25 4758 4763 10.1093/nar/25.23.4758
    • (1997) Nucleic Acid Res , vol.25 , pp. 4758-4763
    • Huang Xy, P.1    Leproust, E.2    Gao, X.3
  • 36
    • 0023650861 scopus 로고
    • Sequence-dependent hydrolysis of RNA using modified oligonucleotide splints and RNase H
    • 10.1016/0014-5793(87)80171-0
    • H Inoue Y Hayase S Iwai E Ohtsuka 1987 Sequence-dependent hydrolysis of RNA using modified oligonucleotide splints and RNase H FEBS Lett 215 327 330 10.1016/0014-5793(87)80171-0
    • (1987) FEBS Lett , vol.215 , pp. 327-330
    • Inoue, H.1    Hayase, Y.2    Iwai, S.3    Ohtsuka, E.4
  • 37
    • 33644774471 scopus 로고    scopus 로고
    • Optimal isotope labelling for NMR protein structure determinations
    • DOI 10.1038/nature04525, PII N04525
    • M Kainosho T Torizawa Y Iwashita T Terauchi A Mei Ono P Guntert 2006 Optimal isotope labelling for NMR protein structure determinations Nature 440 52 57 10.1038/nature04525 2006Natur.440...52K (Pubitemid 43336263)
    • (2006) Nature , vol.440 , Issue.7080 , pp. 52-57
    • Kainosho, M.1    Torizawa, T.2    Iwashita, Y.3    Terauchi, T.4    Mei Ono, A.5    Guntert, P.6
  • 38
    • 0032827799 scopus 로고    scopus 로고
    • A simple and efficient method to reduce nontemplated nucleotide addition at the 3' terminus of RNAs transcribed by T7 RNA polymerase
    • DOI 10.1017/S1355838299991033
    • C Kao M Zheng S Rüdisser 1999 A simple and efficient method to reduce non templated nucleotide addition at the 3 terminus of RNAs transcribed by T7 RNA polymerase RNA 5 1268 1272 10.1017/S1355838299991033 (Pubitemid 29422768)
    • (1999) RNA , vol.5 , Issue.9 , pp. 1268-1272
    • Kao, C.1    Zheng, M.2    Rudisser, S.3
  • 39
    • 21244439380 scopus 로고    scopus 로고
    • Regulation of apoptosis by alternative pre-mRNA splicing
    • DOI 10.1016/j.molcel.2005.05.026, PII S1097276505013754
    • VN Kim 2005 Small RNAs: classification, biogenesis, and function Mol Cells 19 1 15 10.1016/j.molcel.2005.05.026 (Pubitemid 40884653)
    • (2005) Molecular Cell , vol.19 , Issue.1 , pp. 1-13
    • Schwerk, C.1    Schulze-Osthoff, K.2
  • 40
    • 0029435032 scopus 로고
    • Selective deuteration of RNA for NMR signal assignment
    • I Kim, et al. 1995 Selective deuteration of RNA for NMR signal assignment Nucleic Acids Symp Ser 34 123 124
    • (1995) Nucleic Acids Symp ser , vol.34 , pp. 123-124
    • Kim, I.1
  • 41
    • 0037077562 scopus 로고    scopus 로고
    • NMR study of 100 kDa HCV IRES RNA, using segmental isotope labeling
    • DOI 10.1021/ja026647w
    • I Kim PJ Lukavsky JD Puglisi 2002 NMR study of 100 kDa HCV IRES RNA using segmental isotope labeling J Am Chem Soc 124 9338 9339 10.1021/ja026647w (Pubitemid 34856197)
    • (2002) Journal of the American Chemical Society , vol.124 , Issue.32 , pp. 9338-9339
    • Kim, I.1    Lukavsky, P.J.2    Puglisi, J.D.3
  • 42
    • 33846446409 scopus 로고    scopus 로고
    • Rapid purification of RNAs using fast performance liquid chromatography (FPLC)
    • DOI 10.1261/rna.342607
    • I Kim SA McKenna E Viani-Puglisi JD Puglisi 2007 Rapid purification of RNAs using fast performance liquid chromatography (FPLC) RNA 13 289 294 10.1261/rna.342607 (Pubitemid 46147903)
    • (2007) RNA , vol.13 , Issue.2 , pp. 289-294
    • Kim, I.1    Mckenna, S.A.2    Puglisi, E.V.3    Puglisi, J.D.4
  • 43
    • 34548395468 scopus 로고    scopus 로고
    • The ribosome in focus: New structures bring new insights
    • DOI 10.1016/j.tibs.2007.08.002, PII S0968000407001909
    • A Korostelev HF Noller 2007 The ribosome in focus: new structures bring new insights Trends Biochem Sci 32 434 441 10.1016/j.tibs.2007.08.002 (Pubitemid 47369163)
    • (2007) Trends in Biochemical Sciences , vol.32 , Issue.9 , pp. 434-441
    • Korostelev, A.1    Noller, H.F.2
  • 44
    • 2142803658 scopus 로고    scopus 로고
    • Quick two-step RNA ligation employing periodate oxidation
    • 10.1093/nar/gng145
    • S Kurata T Ohtsuki T Suzuki K Watanabe 2003 Quick two-step RNA ligation employing periodate oxidation Nucl Acids Res 31 e145 10.1093/nar/gng145
    • (2003) Nucl Acids Res , vol.31 , pp. 145
    • Kurata, S.1    Ohtsuki, T.2    Suzuki, T.3    Watanabe, K.4
  • 45
    • 28344451166 scopus 로고    scopus 로고
    • Optimizing splinted ligation of highly structured small RNAs
    • DOI 10.1261/rna.2170705
    • J Kurschat WCM R Wombacher M Helm 2005 Optimizing splinted ligation of highly structured small RNAs RNA 11 1909 1914 10.1261/rna.2170705 (Pubitemid 41720039)
    • (2005) RNA , vol.11 , Issue.12 , pp. 1909-1914
    • Kurschat, W.C.1    Muller, J.2    Wombacher, R.3    Helm, M.4
  • 46
    • 0029845145 scopus 로고    scopus 로고
    • RNase H cleavage for processing of in vitro transcribed RNA for NMR studies and RNA ligation
    • J Lapham DM Crothers 1996 RNase H cleavage for processing of in vitro transcribed RNA for NMR studies and RNA ligation RNA 2 289 296
    • (1996) RNA , vol.2 , pp. 289-296
    • Lapham, J.1    Crothers, D.M.2
  • 47
    • 1942501609 scopus 로고    scopus 로고
    • Large-scale preparation and purification of polyacrylamide-free RNA oligonucleotides
    • DOI 10.1261/rna.5264804
    • PJ Lukavsky JD Puglisi 2004 Large-scale preparation and purification of polyacrylamide-free RNA oligonucleotides RNA 10 889 893 10.1261/rna.5264804 (Pubitemid 38529751)
    • (2004) RNA , vol.10 , Issue.5 , pp. 889-893
    • Lukavsky, P.J.1    Puglisi, J.D.2
  • 48
    • 16244371290 scopus 로고    scopus 로고
    • Structure determination of large biological RNAs
    • DOI 10.1016/S0076-6879(05)94016-0, Nuclear Magnetic Resonance of Biological Macromolecules
    • PJ Lukavsky JD Puglisi 2005 Structure determination of large biological RNAs Methods Enzymol 394 399 415 10.1016/S0076-6879(05)94016-0 (Pubitemid 40460925)
    • (2005) Methods in Enzymology , vol.394 , pp. 399-416
    • Lukavsky, P.J.1    Puglisi, J.D.2
  • 49
    • 0344628782 scopus 로고    scopus 로고
    • Structure of HCV IRES domain II determined by NMR
    • DOI 10.1038/nsb1004
    • PJ Lukavsky I Kim GA Otto JD Puglisi 2003 Structure of HCV IRES domain II determined by NMR Nature Struct Biol 10 1033 1038 10.1038/nsb1004 (Pubitemid 37500496)
    • (2003) Nature Structural Biology , vol.10 , Issue.12 , pp. 1033-1038
    • Lukavsky, P.J.1    Kim, I.2    Otto, G.A.3    Puglisi, J.D.4
  • 50
    • 23144440350 scopus 로고    scopus 로고
    • DINAMelt web server for nucleic acid melting prediction
    • DOI 10.1093/nar/gki591
    • NR Markham M Zuker 2005 DINAMelt web server for nucleic acid melting prediction Nucleic Acids Res 33 W577 W581 10.1093/nar/gki591 (Pubitemid 44529988)
    • (2005) Nucleic Acids Research , vol.33 , Issue.WEB. SERV. ISS.
    • Markham, N.R.1    Zuker, M.2
  • 51
    • 84934438960 scopus 로고    scopus 로고
    • UNAFold: Software for nucleic acid folding and hybridization
    • 10.1007/978-1-60327-429-6-1
    • NR Markham M Zuker 2008 UNAFold: software for nucleic acid folding and hybridization Methods Mol Biol 453 3 31 10.1007/978-1-60327-429-6-1
    • (2008) Methods Mol Biol , vol.453 , pp. 3-31
    • Markham, N.R.1    Zuker, M.2
  • 52
    • 0033634673 scopus 로고    scopus 로고
    • Functional recognition of 5′ splice site by U4/U6.U5 tri-snRNP defines a novel ATP-dependent step in early spliceosome assembly
    • 10.1016/S1097-2765(00)00032-0
    • PA Maroney CM Romfo TW Nilsen 2000 Functional recognition of 5′ splice site by U4/U6.U5 tri-snRNP defines a novel ATP-dependent step in early spliceosome assembly Mol Cell 6 317 328 10.1016/S1097-2765(00)00032-0
    • (2000) Mol Cell , vol.6 , pp. 317-328
    • Maroney, P.A.1    Romfo, C.M.2    Nilsen, T.W.3
  • 53
    • 39149123507 scopus 로고    scopus 로고
    • Purification and characterization of transcribed RNAs using gel filtration chromatography
    • 10.1038/nprot.2007.480
    • SA McKenna, et al. 2007 Purification and characterization of transcribed RNAs using gel filtration chromatography Nat Protoc 2 3270 3277 10.1038/nprot.2007.480
    • (2007) Nat Protoc , vol.2 , pp. 3270-3277
    • McKenna, S.A.1
  • 54
    • 0027529636 scopus 로고
    • Selective isotopic enrichment of synthetic RNA: Application to the HIV-1 TAR element
    • DOI 10.1021/bi00053a002
    • MJ Michnicka JW Harper GC King 1993 Selective isotopic enrichment of synthetic RNA: application to the HIV-1 TAR element Biochemistry 32 395 400 10.1021/bi00053a002 (Pubitemid 23034874)
    • (1993) Biochemistry , vol.32 , Issue.2 , pp. 395-400
    • Michnicka, M.J.1    Harper, J.W.2    King, G.C.3
  • 55
    • 0024819449 scopus 로고
    • Synthesis of small RNAs using T7 RNA polymerase
    • DOI 10.1016/0076-6879(89)80091-6
    • JF Milligan OC Uhlenbeck 1989 Synthesis of small RNAs using T7 RNA polymerase Meth Enzymol 180 51 62 10.1016/0076-6879(89)80091-6 (Pubitemid 20039565)
    • (1989) Methods in Enzymology , vol.180 , pp. 51-62
    • Milligan, J.F.1    Uhlenbeck, O.C.2
  • 56
    • 0023651444 scopus 로고
    • Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates
    • 10.1093/nar/15.21.8783
    • JF Milligan DR Groebe GW Witherell OC Uhlenbeck 1987 Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates Nucleic Acids Res 15 8783 9798 10.1093/nar/15.21.8783
    • (1987) Nucleic Acids Res , vol.15 , pp. 8783-9798
    • Milligan, J.F.1    Groebe, D.R.2    Witherell, G.W.3    Uhlenbeck, O.C.4
  • 57
    • 0026680843 scopus 로고
    • Site-specific modification of pre-mRNA: The 2'-hydroxyl groups at the splice sites
    • 10.1126/science.1589782 1992Sci.256.992M
    • MJ Moore PA Sharp 1992 Site-specific modification of pre-mRNA: the 2'-hydroxyl groups at the splice sites Science 256 992 997 10.1126/science. 1589782 1992Sci...256..992M
    • (1992) Science , vol.256 , pp. 992-997
    • Moore, M.J.1    Sharp, P.A.2
  • 59
    • 0026565488 scopus 로고
    • Three-dimensional heteronuclear NMR studies of RNA
    • 10.1038/355184a0 1992Natur.355.184N
    • EP Nikonowicz A Pardi 1992 Three-dimensional heteronuclear NMR studies of RNA Nature 355 184 186 10.1038/355184a0 1992Natur.355..184N
    • (1992) Nature , vol.355 , pp. 184-186
    • Nikonowicz, E.P.1    Pardi, A.2
  • 60
    • 0029991352 scopus 로고    scopus 로고
    • Preparation of biologically active Ascaris suum mitochondrial tRNA(Met) with a TV-replacement loop by ligation of chemically synthesized RNA fragments
    • DOI 10.1093/nar/24.4.662
    • T Ohtsuki G Kawai Y Watanabe K Kita K Nishikawa K Watanabe 1996 Preparation of biologically active Ascaris suum mitochondrial tRNAMet with a TV-replacement loop by ligation of chemically synthesized RNA fragments Nucl Acids Res 24 662 667 10.1093/nar/24.4.662 (Pubitemid 26085841)
    • (1996) Nucleic Acids Research , vol.24 , Issue.4 , pp. 662-667
    • Ohtsuki, T.1    Kawal, G.2    Watanabe, Y.-I.3    Kita, K.4    Nishikawa, K.5    Watanabe, K.6
  • 61
    • 0031822040 scopus 로고    scopus 로고
    • Stable isotope-edited NMR analysis of Ascaris suum mitochondrial tRNAMet having a TV-replacement loop
    • T Ohtsuki G Kawai K Watanabe 1998 Stable isotope-edited NMR analysis of Ascaris suum mitochondrial tRNAMet having a TV-replacement loop J Biochem 124 28 34
    • (1998) J Biochem , vol.124 , pp. 28-34
    • Ohtsuki, T.1    Kawai, G.2    Watanabe, K.3
  • 62
    • 0029922975 scopus 로고    scopus 로고
    • The 5' and 3' splice sites come together via a three dimensional diffusion mechanism
    • DOI 10.1093/nar/24.9.1638
    • Z Pasman MA Garcia-Blanco 1996 The 5′ and 3′ splice sites come together via a three dimensional diffusion mechanism Nucleic Acids Res 24 1638 1645 10.1093/nar/24.9.1638 (Pubitemid 26137920)
    • (1996) Nucleic Acids Research , vol.24 , Issue.9 , pp. 1638-1645
    • Pasman, Z.1    Garcia-Blanco, M.A.2
  • 63
    • 0030612833 scopus 로고    scopus 로고
    • 2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution
    • DOI 10.1073/pnas.94.23.12366
    • K Pervushin R Riek G Wider K Wüthrich 1997 Attenuated T2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution Proc Natl Acad Sci USA 94 12366 12371 10.1073/pnas.94.23.12366 1997PNAS...9412366P (Pubitemid 27492534)
    • (1997) Proceedings of the National Academy of Sciences of the United States of America , vol.94 , Issue.23 , pp. 12366-12371
    • Pervushin, K.1    Riek, R.2    Wider, G.3    Wuthrich, K.4
  • 64
    • 1242340502 scopus 로고    scopus 로고
    • New applications of 2D filtered/edited NOESY for assignment and structure elucidation of RNA and RNA-protein complexes
    • DOI 10.1023/B:JNMR.0000012861.95939.05
    • RD Peterson CA Theimer H Wu J Feigon 2004 New applications of 2D filtered/edited NOESY for assignment and structure elucidation of RNA and RNA-protein complexes J Biomol NMR 28 59 67 10.1023/B:JNMR.0000012861.95939.05 (Pubitemid 38220160)
    • (2004) Journal of Biomolecular NMR , vol.28 , Issue.1 , pp. 59-67
    • Peterson, R.D.1    Theimer, C.A.2    Wu, H.3    Feigon, J.4
  • 65
    • 0031686310 scopus 로고    scopus 로고
    • T7 RNA polymerase produces 5' end heterogeneity during in vitro transcription from certain templates
    • DOI 10.1017/S135583829800106X
    • JA Pleiss ML Derrick OC Uhlenbeck 1998 T7 RNA polymerase produces 5' end heterogeneity during in vitro transcription from certain templates RNA 4 1313 1317 10.1017/S135583829800106X (Pubitemid 28457861)
    • (1998) RNA , vol.4 , Issue.10 , pp. 1313-1317
    • Pleiss, J.A.1    Derrick, M.L.2    Uhlenbeck, O.C.3
  • 66
    • 0027991544 scopus 로고
    • In vitro transcription: Preparative RNA yields in analytical scale reactions
    • DOI 10.1006/abio.1994.1360
    • ID Pokrovskaya VV Gurevich 1994 In vitro transcription: preparative RNA yields in analytical scale reactions Anal Biochem 220 420 423 10.1006/abio.1994.1360 (Pubitemid 24261191)
    • (1994) Analytical Biochemistry , vol.220 , Issue.2 , pp. 420-423
    • Pokrovskaya, I.D.1    Gurevich, V.V.2
  • 67
    • 60149099385 scopus 로고    scopus 로고
    • Evolution and functions of long no ncoding RNAs
    • 10.1016/j.cell.2009.02.006
    • CP Ponting PL Oliver W Reik 2009 Evolution and functions of long no ncoding RNAs Cell 136 629 641 10.1016/j.cell.2009.02.006
    • (2009) Cell , vol.136 , pp. 629-641
    • Ponting, C.P.1    Oliver, P.L.2    Reik, W.3
  • 69
    • 0028205987 scopus 로고
    • Branch nucleophile selection in pre-mRNA splicing: Evidence for the bulged duplex model
    • 10.1101/gad.8.5.587
    • CC Query MJ Moore PA Sharp 1994 Branch nucleophile selection in pre-mRNA splicing: evidence for the bulged duplex model Genes Dev 8 587 597 10.1101/gad.8.5.587
    • (1994) Genes Dev , vol.8 , pp. 587-597
    • Query, C.C.1    Moore, M.J.2    Sharp, P.A.3
  • 70
    • 0015916463 scopus 로고
    • Nucleosides. LXXIX. Facile base-catalyzed hydrogen isotope labeling at position 6 of pyrimidine nucleosides
    • 10.1021/ja00786a044
    • JA Rabi JJ Fox 1973 Nucleosides. LXXIX. Facile base-catalyzed hydrogen isotope labeling at position 6 of pyrimidine nucleosides J Am Chem Soc 95 1628 1632 10.1021/ja00786a044
    • (1973) J Am Chem Soc , vol.95 , pp. 1628-1632
    • Rabi, J.A.1    Fox, J.J.2
  • 72
    • 0032545045 scopus 로고    scopus 로고
    • Novel RNA synthesis method using S'-O-silyl-2'-O-orthoester protecting groups [13]
    • DOI 10.1021/ja980730v
    • SA Scaringe FE Wincott MH Caruther 1998 Novel RNA synthesis method using 5′-O-Silyl-2′-O-orthoester protecting groups J Am Chem Soc 120 11820 11821 10.1021/ja980730v (Pubitemid 28543605)
    • (1998) Journal of the American Chemical Society , vol.120 , Issue.45 , pp. 11820-11821
    • Scaringe, S.A.1    Wincott, F.E.2    Caruthers, M.H.3
  • 73
    • 0033625703 scopus 로고    scopus 로고
    • Preparation of specifically 2H- and 13C-labeled ribonucleotides
    • 10.1016/S0076-6879(00)17004-1
    • LG Scott TJ Tolbert JR Williamson 2000 Preparation of specifically 2H- and 13C-labeled ribonucleotides Methods Enzymol 317 18 38 10.1016/S0076-6879(00) 17004-1
    • (2000) Methods Enzymol , vol.317 , pp. 18-38
    • Scott, L.G.1    Tolbert, T.J.2    Williamson, J.R.3
  • 74
    • 0033613559 scopus 로고    scopus 로고
    • The 1.8 Å crystal structure of a statically disordered 17 base-pair RNA duplex: Principles of RNA crystal packing and its effect on nucleic acid structure
    • DOI 10.1006/jmbi.1998.2385
    • SA Shah AT Brunger 1999 The 1.8 Å crystal structure of a statically disordered 17 base pair RNA duplex: Principles of RNA crystal packing and its effect on nucleic acid structure J Mol Biol 285 1577 1588 10.1006/jmbi.1998.2385 (Pubitemid 29060457)
    • (1999) Journal of Molecular Biology , vol.285 , Issue.4 , pp. 1577-1588
    • Shah, S.A.1    Brunger, A.T.2
  • 75
    • 0032855035 scopus 로고    scopus 로고
    • High-performance liquid chromatography purification of homogenous-length RNA produced by trans cleavage with a hammerhead ribozyme
    • DOI 10.1017/S1355838299990945
    • TP Shields E Mollova L Ste marie MR Hansen A Pardi 1999 High-performance liquid chromatography purification of homogeneous-length RNA produced by trans cleavage with a hammerhead ribozyme RNA 5 1259 1267 10.1017/S1355838299990945 (Pubitemid 29422767)
    • (1999) RNA , vol.5 , Issue.9 , pp. 1259-1267
    • Shields, T.P.1    Mollova, E.2    Marie, L.Ste.3    Hansen, M.R.4    Pardi, A.5
  • 76
    • 33846928691 scopus 로고    scopus 로고
    • Quantitative dynamics and binding studies of the 20S proteasome by NMR
    • DOI 10.1038/nature05512, PII NATURE05512
    • R Sprangers LE Kay 2007 Quantitative dynamics and binding studies of the 20s proteasome by NMR Nature 445 618 622 10.1038/nature05512 (Pubitemid 46232877)
    • (2007) Nature , vol.445 , Issue.7128 , pp. 618-622
    • Sprangers, R.1    Kay, L.E.2
  • 77
    • 57449102624 scopus 로고    scopus 로고
    • Potential intra- and intermolecular interactions involving the Unique-5′ Region of the HIV-1 5′-UTR
    • 10.1021/bi8014373
    • S Spriggs L Garyu R Connor MF Summers 2008 Potential intra- and intermolecular interactions involving the Unique-5′ Region of the HIV-1 5′-UTR Biochemistry 46 13064 13073 10.1021/bi8014373
    • (2008) Biochemistry , vol.46 , pp. 13064-13073
    • Spriggs, S.1    Garyu, L.2    Connor, R.3    Summers, M.F.4
  • 78
    • 33751118289 scopus 로고    scopus 로고
    • An RNA ligase-mediated method for the efficient creation of large, synthetic RNAs
    • DOI 10.1261/rna.93506
    • MR Stark JA Pleiss M Deras SA Scaringe SD Rader 2006 An RNA ligase-mediated method for the efficient creation of large, synthetic RNAs RNA 12 2014 2019 10.1261/rna.93506 (Pubitemid 44771760)
    • (2006) RNA , vol.12 , Issue.11 , pp. 2014-2019
    • Stark, M.R.1    Pleiss, J.A.2    Deras, M.3    Scaringe, S.A.4    Rader, S.D.5
  • 79
    • 39749138785 scopus 로고    scopus 로고
    • A structural understanding of the dynamic ribosome machine
    • DOI 10.1038/nrm2352, PII NRM2352
    • TA Steitz 2008 A structural understanding of the dynamic ribosome machine Nat Rev Mol Cell Biol 9 242 253 10.1038/nrm2352 (Pubitemid 351301830)
    • (2008) Nature Reviews Molecular Cell Biology , vol.9 , Issue.3 , pp. 242-253
    • Steitz, T.A.1
  • 81
    • 38449121473 scopus 로고    scopus 로고
    • Preparation of large RNA oligonucleotides with complementary isotope-labeled segments for NMR structural studies
    • DOI 10.1038/nprot.2007.306, PII NPROT.2007.306
    • AG Tzakos LE Easton PJ Lukavsky 2007 Preparation of large RNA oligonucleotides with complementary isotope-labeled segments for NMR structural studies Nat Protoc 2 2139 2147 10.1038/nprot.2007.306 (Pubitemid 351565851)
    • (2007) Nature Protocols , vol.2 , Issue.9 , pp. 2139-2147
    • Tzakos, A.G.1    Easton, L.E.2    Lukavsky, P.J.3
  • 82
    • 0023518718 scopus 로고
    • Automated chemical synthesis of long oligoribonucleotides using 2'-O-silylated ribonucleoside 3'-O-phosphoramidites on a controlled-pore glass support: Synthesis of a 43-nucleotide sequence similar to the 3'-half molecule of an Escherichia coli formylmethionine tRNA
    • DOI 10.1021/ja00259a037
    • N Usman KK Ogilvie MY Jiang RJ Cedergren 1987 The automated chemical synthesis of long oligoribuncleotides using 2′-O-silylated ribonucleoside 3′-O-phosphoramidites on a controlled-pore glass support: synthesis of a 43-nucleotide sequence similar to the 3'-half molecule of an Escherichia coli formylmethionine tRNA J Am Chem Soc 109 7845 7854 10.1021/ja00259a037 (Pubitemid 18011363)
    • (1987) Journal of the American Chemical Society , vol.109 , Issue.25 , pp. 7845-7854
    • Usman, N.1    Ogilvie, K.K.2    Jiang, M.-Y.3    Cedergren, R.J.4
  • 83
    • 34548454557 scopus 로고    scopus 로고
    • Structural features of metabolite-sensing riboswitches
    • DOI 10.1016/j.tibs.2007.08.005, PII S0968000407001934
    • CA Wakeman WC Winkler CE Dann III 2007 Structural features of metabolite-sensing ribo switches Trends Biochem Sci 32 415 424 10.1016/j.tibs.2007.08.005 (Pubitemid 47369166)
    • (2007) Trends in Biochemical Sciences , vol.32 , Issue.9 , pp. 415-424
    • Wakeman, C.A.1    Winkler, W.C.2    Dann III, C.E.3
  • 84
    • 0021838346 scopus 로고
    • Specific replacement of functional groups of uridine-33 in yeast phenylalanine transfer ribonucleic acid
    • DOI 10.1021/bi00332a017
    • WL Wittenberg OC Uhlenbeck 1985 Specific replacement of functional groups of uridine-33 in yeast phenylalanine transfer ribonucleic acid Biochemistry 24 2705 2712 10.1021/bi00332a017 (Pubitemid 15016003)
    • (1985) Biochemistry , vol.24 , Issue.11 , pp. 2705-2712
    • Wittenberg, W.L.1    Uhlenbeck, O.C.2
  • 86
    • 0025748046 scopus 로고
    • Synthesis and purification of large amounts of RNA oligonucleotides
    • JR Wyatt M Chastain JD Puglisi 1991 Synthesis and purification of large amounts of RNA oligonucleotides BioTechniques 11 764 769
    • (1991) BioTechniques , vol.11 , pp. 764-769
    • Wyatt, J.R.1    Chastain, M.2    Puglisi, J.D.3
  • 87
    • 0030031397 scopus 로고    scopus 로고
    • Determining RNA solution structure by segmental isotopic labeling and NMR: Application to Caenorhabditis elegans spliced leader RNA 1
    • DOI 10.1073/pnas.93.1.44
    • J Xu JL DM Crothers 1996 Determining RNA solution structure by segmental isotopic labeling and NMR: application to Caenorhabditis elegans spliced leader RNA 1 Proc Natl Acad Sci USA 93 44 48 10.1073/pnas.93.1.44 1996PNAS...93...44X (Pubitemid 26038100)
    • (1996) Proceedings of the National Academy of Sciences of the United States of America , vol.93 , Issue.1 , pp. 44-48
    • Xu, J.1    Lapham, J.2    Crothers, D.M.3
  • 88
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • DOI 10.1093/nar/gkg595
    • M Zuker 2003 Mfold web server for nucleic acid folding and hybridization prediction Nucleic Acids Res 31 3406 3415 10.1093/nar/gkg595 (Pubitemid 37442169)
    • (2003) Nucleic Acids Research , vol.31 , Issue.13 , pp. 3406-3415
    • Zuker, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.