메뉴 건너뛰기




Volumn 39, Issue 5, 2010, Pages 1372-1382

DataSHIELD: Resolving a conflict in contemporary bioscience-performing a pooled analysis of individual-level data without sharing the data

Author keywords

Analysis; Bioinformatics; Disclosure; Distributed computing; ELSI; Ethico legal; Generalized linear model; GLM; Identification; Individual level; Information technology; IT; Meta analysis; Pooling; Study level

Indexed keywords

ALGORITHM; BIOINFORMATICS; DATA INTERPRETATION; DATABASE; ETIOLOGY; HEALTH SERVICES; INFORMATION TECHNOLOGY; LIFESTYLE; META-ANALYSIS; SOCIOECONOMIC SURVEY;

EID: 78149243538     PISSN: 03005771     EISSN: 14643685     Source Type: Journal    
DOI: 10.1093/ije/dyq111     Document Type: Article
Times cited : (148)

References (46)
  • 1
    • 60149102060 scopus 로고    scopus 로고
    • Size matters: just how big is BIG?: Quantifying realistic sample size requirements for human genome epidemiology
    • Burton PR, Hansell AL, Fortier I et al. Size matters: just how big is BIG?: Quantifying realistic sample size requirements for human genome epidemiology. Int J Epidemiol 2009;38:263-73.
    • (2009) Int J Epidemiol , vol.38 , pp. 263-273
    • Burton, P.R.1    Hansell, A.L.2    Fortier, I.3
  • 2
    • 38449117820 scopus 로고    scopus 로고
    • Designing candidate gene and genome-wide case-control association studies
    • Zondervan KT, Cardon LR. Designing candidate gene and genome-wide case-control association studies. Nat Protocols 2007;2:2492-501.
    • (2007) Nat Protocols , vol.2 , pp. 2492-2501
    • Zondervan, K.T.1    Cardon, L.R.2
  • 3
    • 67149095078 scopus 로고    scopus 로고
    • Designing genome-wide association studies: sample size, power, imputation, and the choice of genotyping chip
    • Spencer CC, Su Z, Donnelly P, Marchini J. Designing genome-wide association studies: sample size, power, imputation, and the choice of genotyping chip. PLoS Genet 2009;5:e1000477.
    • (2009) PLoS Genet , vol.5
    • Spencer, C.C.1    Su, Z.2    Donnelly, P.3    Marchini, J.4
  • 4
    • 2642585738 scopus 로고    scopus 로고
    • The case for a US prospective cohort study of genes and environment
    • Collins FS. The case for a US prospective cohort study of genes and environment. Nature 2004;429:475-77.
    • (2004) Nature , vol.429 , pp. 475-477
    • Collins, F.S.1
  • 5
    • 6944253621 scopus 로고    scopus 로고
    • The case for a global human genome epidemiology initiative
    • Khoury MJ. The case for a global human genome epidemiology initiative. Nat Genet 2004;36:1027-28.
    • (2004) Nat Genet , vol.36 , pp. 1027-1028
    • Khoury, M.J.1
  • 6
    • 63449136073 scopus 로고    scopus 로고
    • Common variants at ten loci influence QT interval duration in the QTGEN Study
    • Newton-Cheh C, Eijgelsheim M, Rice KM et al. Common variants at ten loci influence QT interval duration in the QTGEN Study. Nat Genet 2009;41:399-406.
    • (2009) Nat Genet , vol.41 , pp. 399-406
    • Newton-Cheh, C.1    Eijgelsheim, M.2    Rice, K.M.3
  • 7
    • 67349085063 scopus 로고    scopus 로고
    • Eight blood pressure loci identified by genomewide association study of 34,433 people of European ancestry
    • Newton-Cheh C, Johnson T, Gateva V et al. Eight blood pressure loci identified by genomewide association study of 34,433 people of European ancestry. Nat Genet 2009;41: 666-76.
    • (2009) Nat Genet , vol.41 , pp. 666-676
    • Newton-Cheh, C.1    Johnson, T.2    Gateva, V.3
  • 8
    • 73349143302 scopus 로고    scopus 로고
    • Genome-wide association study identifies five loci associated with lung function
    • Repapi E, Sayers I, Wain LV et al. Genome-wide association study identifies five loci associated with lung function. Nat Genet 2009;42:36-44.
    • (2009) Nat Genet , vol.42 , pp. 36-44
    • Repapi, E.1    Sayers, I.2    Wain, L.V.3
  • 9
    • 67249117049 scopus 로고    scopus 로고
    • Potential etiologic and functional implications of genome-wide association loci for human diseases and traits
    • Hindorff LA, Sethupathy P, Junkins HA et al. Potential etiologic and functional implications of genome-wide association loci for human diseases and traits. Proc Natl Acad Sci 2009;106:9362-67.
    • (2009) Proc Natl Acad Sci , vol.106 , pp. 9362-9367
    • Hindorff, L.A.1    Sethupathy, P.2    Junkins, H.A.3
  • 10
    • 35748981184 scopus 로고    scopus 로고
    • Association scan of 14,500 nonsynonymous SNPs in four diseases identifies autoimmunity variants
    • Burton PR, Clayton DG, Cardon LR et al. Association scan of 14,500 nonsynonymous SNPs in four diseases identifies autoimmunity variants. Nat Genet 2007;39:1329-37.
    • (2007) Nat Genet , vol.39 , pp. 1329-1337
    • Burton, P.R.1    Clayton, D.G.2    Cardon, L.R.3
  • 11
    • 34249895023 scopus 로고    scopus 로고
    • Replication of genome-wide association signals in U.K. Samples reveals risk loci for type 2 diabetes
    • Zeggini E, Weedon MN, Lindgren CM et al. Replication of genome-wide association signals in U.K. Samples reveals risk loci for type 2 diabetes. Science 2007;316:1336-39.
    • (2007) Science , vol.316 , pp. 1336-1339
    • Zeggini, E.1    Weedon, M.N.2    Lindgren, C.M.3
  • 12
    • 34248594090 scopus 로고    scopus 로고
    • A Common Variant in the FTO Gene is Associated with Body Mass Index and Predisposes to Childhood and Adult Obesity
    • Frayling TM, Timpson NJ, Weedon MN et al. A Common Variant in the FTO Gene is Associated with Body Mass Index and Predisposes to Childhood and Adult Obesity, Science 2007; 316:889-94.
    • (2007) Science , vol.316 , pp. 889-894
    • Frayling, T.M.1    Timpson, N.J.2    Weedon, M.N.3
  • 13
    • 34250006413 scopus 로고    scopus 로고
    • Genome-wide association study identifies novel breast cancer susceptibility loci
    • Easton DF, Pooley KA, Dunning AM et al. Genome-wide association study identifies novel breast cancer susceptibility loci. Nature 2007;447:1087-93.
    • (2007) Nature , vol.447 , pp. 1087-1093
    • Easton, D.F.1    Pooley, K.A.2    Dunning, A.M.3
  • 14
    • 34249885875 scopus 로고    scopus 로고
    • A genomewide association study of type 2 diabetes in Finns detects multiple susceptibility variants
    • Scott LJ, Mohlke KL, Bonnycastle LL et al. A genomewide association study of type 2 diabetes in Finns detects multiple susceptibility variants. Science 2007;316:1341-45.
    • (2007) Science , vol.316 , pp. 1341-1345
    • Scott, L.J.1    Mohlke, K.L.2    Bonnycastle, L.L.3
  • 15
    • 34250002140 scopus 로고    scopus 로고
    • Common variants on chromosomes 2q35 and 16q12 confer susceptibility to estrogen receptor-positive breast cancer
    • Stacey SN, Manolescu A, Sulem P et al. Common variants on chromosomes 2q35 and 16q12 confer susceptibility to estrogen receptor-positive breast cancer. Nat Genet 2007; 39:865-69.
    • (2007) Nat Genet , vol.39 , pp. 865-869
    • Stacey, S.N.1    Manolescu, A.2    Sulem, P.3
  • 16
    • 34249888775 scopus 로고    scopus 로고
    • Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels
    • Saxena R, Voight BF, Lyssenko V et al. Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels. Science 2007;316:1331-36.
    • (2007) Science , vol.316 , pp. 1331-1336
    • Saxena, R.1    Voight, B.F.2    Lyssenko, V.3
  • 17
    • 0027253522 scopus 로고
    • Methods for pooled analyses of epidemiologic studies
    • Friedenreich CM. Methods for pooled analyses of epidemiologic studies. Epidemiology 1993;4:295-302.
    • (1993) Epidemiology , vol.4 , pp. 295-302
    • Friedenreich, C.M.1
  • 18
    • 0033106032 scopus 로고    scopus 로고
    • Structure of the standardized computerized 24-h diet recall interview used as reference method in the 22 centers participating in the EPIC project
    • Slimani N, Deharveng G, Charrondiére RU et al. Structure of the standardized computerized 24-h diet recall interview used as reference method in the 22 centers participating in the EPIC project. Comp Meth Programs Biomed 1999;58:251-66.
    • (1999) Comp Meth Programs Biomed , vol.58 , pp. 251-266
    • Slimani, N.1    Deharveng, G.2    Charrondiére, R.U.3
  • 20
    • 1942535798 scopus 로고    scopus 로고
    • Is income inequality a determinant of population health? Part 1. A systematic review?
    • Lynch J, Davey Smith G, Harper S et al. Is income inequality a determinant of population health? Part 1. A systematic review? Milbank Quart 2004;82:5-99.
    • (2004) Milbank Quart , vol.82 , pp. 5-99
    • Lynch, J.1    Davey Smith, G.2    Harper, S.3
  • 21
    • 34547843675 scopus 로고    scopus 로고
    • Income inequality and mortality: a multi-level prospective study of 521,248 individuals in 50 US States
    • Backlund E, Rowe G, Lynch J, Wolfson M, Kaplan G, Sorlie P. Income inequality and mortality: a multi-level prospective study of 521, 248 individuals in 50 US States. Int J Epidemiol 2007;36:590-96.
    • (2007) Int J Epidemiol , vol.36 , pp. 590-596
    • Backlund, E.1    Rowe, G.2    Lynch, J.3    Wolfson, M.4    Kaplan, G.5    Sorlie, P.6
  • 23
    • 50849101381 scopus 로고    scopus 로고
    • Resolving individuals contributing trace amounts of DNA to highly complex mixtures using high-density SNP genotyping microarrays
    • Homer N, Szelinger S, Redman M et al. Resolving individuals contributing trace amounts of DNA to highly complex mixtures using high-density SNP genotyping microarrays. PLoS Genet 2008;4:e1000167.
    • (2008) PLoS Genet , vol.4
    • Homer, N.1    Szelinger, S.2    Redman, M.3
  • 24
    • 24944534544 scopus 로고    scopus 로고
    • Data dissemination and disclosure limitation in world without microdata: a risk-utility framework for remote access analysis servers
    • Gomatam S, Karr A, Reiter J, Sanil A. Data dissemination and disclosure limitation in world without microdata: a risk-utility framework for remote access analysis servers. Statistical Science 2005;20:163-77.
    • (2005) Statistical Science , vol.20 , pp. 163-177
    • Gomatam, S.1    Karr, A.2    Reiter, J.3    Sanil, A.4
  • 25
  • 26
    • 78149271087 scopus 로고    scopus 로고
    • GCNews. (12 October 2009, date last accessed)
    • GCNews. Health Beats MoD on Equipment Losses, 2008. http://www.smarthealthcare.com/equipment-losses (12 October 2009, date last accessed).
    • (2008) Health Beats MoD on Equipment Losses, 2008
  • 27
    • 73449112365 scopus 로고    scopus 로고
    • Public access to genome-wide data: five views on balancing research with privacy and protection
    • P3G_Consortium
    • P3G_Consortium, Church G, Heeney C, et al. Public access to genome-wide data: five views on balancing research with privacy and protection. PLoS Genet 2009;5:e1000665.
    • (2009) PLoS Genet , vol.5
    • Church, G.1    Heeney, C.2
  • 28
    • 43049146524 scopus 로고    scopus 로고
    • A HapMap harvest of insights into the genetics of common disease
    • Manolio TA, Brooks LD, Collins FS. A HapMap harvest of insights into the genetics of common disease. J Clin Investigat 2008;118:1590-605.
    • (2008) J Clin Investigat , vol.118 , pp. 1590-1605
    • Manolio, T.A.1    Brooks, L.D.2    Collins, F.S.3
  • 29
    • 39549122751 scopus 로고    scopus 로고
    • Meta-analysis of individual- and aggregate-level data
    • Sutton AJ, Kendrick D, Coupland CA. Meta-analysis of individual- and aggregate-level data. Stat Med 2008;27: 651-69.
    • (2008) Stat Med , vol.27 , pp. 651-669
    • Sutton, A.J.1    Kendrick, D.2    Coupland, C.A.3
  • 31
    • 34447329000 scopus 로고    scopus 로고
    • On the synthesis and interpretation of consistent but weak gene-disease associations in the era of genome-wide association studies
    • Khoury MJ, Little J, Gwinn M, Ioannidis JP. On the synthesis and interpretation of consistent but weak gene-disease associations in the era of genome-wide association studies. Int J Epidemiol 2007;36:439-45.
    • (2007) Int J Epidemiol , vol.36 , pp. 439-445
    • Khoury, M.J.1    Little, J.2    Gwinn, M.3    Ioannidis, J.P.4
  • 32
    • 26244444318 scopus 로고    scopus 로고
    • What makes a good genetic association study?
    • Hattersley AT, McCarthy MI. What makes a good genetic association study? Lancet 2005;366:1315-23.
    • (2005) Lancet , vol.366 , pp. 1315-1323
    • Hattersley, A.T.1    McCarthy, M.I.2
  • 33
    • 31344467157 scopus 로고    scopus 로고
    • Do we need a uniform regulatory system for biobanks across Europe?
    • Kaye J. Do we need a uniform regulatory system for biobanks across Europe? Eur J Hum Genet 2006;14: 245-48.
    • (2006) Eur J Hum Genet , vol.14 , pp. 245-248
    • Kaye, J.1
  • 34
    • 46849085220 scopus 로고    scopus 로고
    • Ethical and legal constraints on data sharing between countries in multinational epidemiological studies in Europe report from a joint workshop of the European League Against Rheumatism standing committee on epidemiology with the "AutoCure" project
    • Zink A, Silman AJ. Ethical and legal constraints on data sharing between countries in multinational epidemiological studies in Europe report from a joint workshop of the European League Against Rheumatism standing committee on epidemiology with the "AutoCure" project. Ann Rheum Dis 2008;67:1041-43.
    • (2008) Ann Rheum Dis , vol.67 , pp. 1041-1043
    • Zink, A.1    Silman, A.J.2
  • 36
    • 67651093762 scopus 로고    scopus 로고
    • Grinding to a halt: the effects of the increasing regulatory burden on research and quality improvement efforts
    • Infectious Diseases Society of America
    • Infectious Diseases Society of America. Grinding to a halt: the effects of the increasing regulatory burden on research and quality improvement efforts. Clin Infectious Dis 2009;49:328-35.
    • (2009) Clin Infectious Dis , vol.49 , pp. 328-335
  • 38
    • 44449087939 scopus 로고    scopus 로고
    • The public population project in genomics (P3G): a proof of concept?
    • Knoppers BM, Fortier I, Legault D, Burton P. The public population project in genomics (P3G): a proof of concept? Eur J Hum Genet 2008;16:664-65.
    • (2008) Eur J Hum Genet , vol.16 , pp. 664-665
    • Knoppers, B.M.1    Fortier, I.2    Legault, D.3    Burton, P.4
  • 39
    • 5344244656 scopus 로고    scopus 로고
    • R Development Core Team. Vienna, Austria: R Foundation for Statistical Computing
    • R Development Core Team. R: A Language and Environment for Statistical Computing. Vienna, Austria: R Foundation for Statistical Computing, 2008.
    • (2008) R: A Language and Environment for Statistical Computing
  • 44
    • 78149252473 scopus 로고    scopus 로고
    • ESRC_Secure_Data_Service. (21 June, date last accessed)
    • ESRC_Secure_Data_Service. http://www.esrc.ac.uk/ESRC InfoCentre/research/resources/SDS.aspx. 2009 (21 June 2010, date last accessed).
    • (2010)
  • 45
    • 70349235495 scopus 로고    scopus 로고
    • The SAIL Databank: building a national architecture for e-health research and evaluation
    • Ford DV, Jones KH, Verplancke JP et al. The SAIL Databank: building a national architecture for e-health research and evaluation. BMC Health Serv Res 2009;9:157.
    • (2009) BMC Health Serv Res , vol.9 , pp. 157
    • Ford, D.V.1    Jones, K.H.2    Verplancke, J.P.3
  • 46
    • 0011241944 scopus 로고
    • Approximate inference in generalized linear mixed models
    • Breslow N, Clayton D. Approximate inference in generalized linear mixed models. J Am Stat Assoc 1993; 88:9-25.
    • (1993) J Am Stat Assoc , vol.88 , pp. 9-25
    • Breslow, N.1    Clayton, D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.