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Volumn 30, Issue 5, 2010, Pages 443-454

Integrative systems biology for data-driven knowledge discovery

Author keywords

Bayesian integration; Bioinformatics; Functional genomics

Indexed keywords

BRCA1 PROTEIN; MYC PROTEIN; PROTEIN P53; RAD51 PROTEIN; TRANSCRIPTION FACTOR E2F1; TRANSCRIPTION FACTOR JUNB;

EID: 78049435359     PISSN: 02709295     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.semnephrol.2010.07.002     Document Type: Article
Times cited : (12)

References (71)
  • 1
    • 33847057776 scopus 로고    scopus 로고
    • Whole genome genotyping technologies on the BeadArray platform
    • Steemers F.J., Gunderson K.L. Whole genome genotyping technologies on the BeadArray platform. Biotechnol J 2007, 2:41-49.
    • (2007) Biotechnol J , vol.2 , pp. 41-49
    • Steemers, F.J.1    Gunderson, K.L.2
  • 2
    • 64149123778 scopus 로고    scopus 로고
    • Next-generation sequencing: from basic research to diagnostics
    • Voelkerding K.V., Dames S.A., Durtschi J.D. Next-generation sequencing: from basic research to diagnostics. Clin Chem 2009, 55:641-658.
    • (2009) Clin Chem , vol.55 , pp. 641-658
    • Voelkerding, K.V.1    Dames, S.A.2    Durtschi, J.D.3
  • 3
    • 0035985177 scopus 로고    scopus 로고
    • Identification of genes periodically expressed in the human cell cycle and their expression in tumors
    • Whitfield M.L., Sherlock G., Saldanha A.J., et al. Identification of genes periodically expressed in the human cell cycle and their expression in tumors. Mol Biol Cell 2002, 13:1977-2000.
    • (2002) Mol Biol Cell , vol.13 , pp. 1977-2000
    • Whitfield, M.L.1    Sherlock, G.2    Saldanha, A.J.3
  • 4
    • 0035503378 scopus 로고    scopus 로고
    • Identification of tumor markers in models of human colorectal cancer using a 19,200-element complementary DNA microarray
    • Hegde P., Qi R., Gaspard R., et al. Identification of tumor markers in models of human colorectal cancer using a 19,200-element complementary DNA microarray. Cancer Res 2001, 61:7792-7797.
    • (2001) Cancer Res , vol.61 , pp. 7792-7797
    • Hegde, P.1    Qi, R.2    Gaspard, R.3
  • 5
    • 0036105484 scopus 로고    scopus 로고
    • Gene-microarray analysis of multiple sclerosis lesions yields new targets validated in autoimmune encephalomyelitis
    • Lock C., Hermans G., Pedotti R., et al. Gene-microarray analysis of multiple sclerosis lesions yields new targets validated in autoimmune encephalomyelitis. Nat Med 2002, 8:500-508.
    • (2002) Nat Med , vol.8 , pp. 500-508
    • Lock, C.1    Hermans, G.2    Pedotti, R.3
  • 6
    • 66849089268 scopus 로고    scopus 로고
    • Protein microarrays: high-throughput tools for proteomics
    • Stoevesandt O., Taussig M.J., He M. Protein microarrays: high-throughput tools for proteomics. Expert Rev Proteomics 2009, 6:145-157.
    • (2009) Expert Rev Proteomics , vol.6 , pp. 145-157
    • Stoevesandt, O.1    Taussig, M.J.2    He, M.3
  • 7
    • 68949206409 scopus 로고    scopus 로고
    • Applying mass spectrometry-based proteomics to genetics, genomics and network biology
    • Gstaiger M., Aebersold R. Applying mass spectrometry-based proteomics to genetics, genomics and network biology. Nat Rev Genet 2009, 10:617-627.
    • (2009) Nat Rev Genet , vol.10 , pp. 617-627
    • Gstaiger, M.1    Aebersold, R.2
  • 8
    • 84969213492 scopus 로고    scopus 로고
    • Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls
    • Wellcome Trust Case Control Consortium
    • Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls. Nature 2007, 447:661-678. Wellcome Trust Case Control Consortium.
    • (2007) Nature , vol.447 , pp. 661-678
  • 9
    • 33847622526 scopus 로고    scopus 로고
    • Genome-wide genotyping in amyotrophic lateral sclerosis and neurologically normal controls: first stage analysis and public release of data
    • Schymick J.C., Scholz S.W., Fung H.C., et al. Genome-wide genotyping in amyotrophic lateral sclerosis and neurologically normal controls: first stage analysis and public release of data. Lancet Neurol 2007, 6:322-328.
    • (2007) Lancet Neurol , vol.6 , pp. 322-328
    • Schymick, J.C.1    Scholz, S.W.2    Fung, H.C.3
  • 10
    • 34347408099 scopus 로고    scopus 로고
    • Problems with genome-wide association studies
    • Shriner D., Vaughan L.K., Padilla M.A., et al. Problems with genome-wide association studies. Science 2007, 316:1840-1841.
    • (2007) Science , vol.316 , pp. 1840-1841
    • Shriner, D.1    Vaughan, L.K.2    Padilla, M.A.3
  • 11
    • 34347382022 scopus 로고    scopus 로고
    • Problems with genome-wide association studies
    • Williams S.M., Canter J.A., Crawford D.C., et al. Problems with genome-wide association studies. Science 2007, 316:1841-1842.
    • (2007) Science , vol.316 , pp. 1841-1842
    • Williams, S.M.1    Canter, J.A.2    Crawford, D.C.3
  • 12
    • 61449230785 scopus 로고    scopus 로고
    • Interpretation of genetic association studies: markers with replicated highly significant odds ratios may be poor classifiers
    • Jakobsdottir J., Gorin M., Conley Y., et al. Interpretation of genetic association studies: markers with replicated highly significant odds ratios may be poor classifiers. PLoS Genet 2009, 5:e1000337.
    • (2009) PLoS Genet , vol.5
    • Jakobsdottir, J.1    Gorin, M.2    Conley, Y.3
  • 13
    • 0033051101 scopus 로고    scopus 로고
    • Direct analysis of protein complexes using mass spectrometry
    • Link A.J., Eng J., Schieltz D.M., et al. Direct analysis of protein complexes using mass spectrometry. Nat Biotechnol 1999, 17:676-682.
    • (1999) Nat Biotechnol , vol.17 , pp. 676-682
    • Link, A.J.1    Eng, J.2    Schieltz, D.M.3
  • 14
    • 0031569489 scopus 로고    scopus 로고
    • Comprehensive on-line LC/LC/MS of proteins
    • Opiteck G.J., Lewis K.C., Jorgenson J.W., et al. Comprehensive on-line LC/LC/MS of proteins. Anal Chem 1997, 69:1518-1524.
    • (1997) Anal Chem , vol.69 , pp. 1518-1524
    • Opiteck, G.J.1    Lewis, K.C.2    Jorgenson, J.W.3
  • 15
    • 36749016685 scopus 로고    scopus 로고
    • Genome-scale RNAi profiling of cell division in human tissue culture cells
    • Kittler R., Pelletier L., Heninger A.K., et al. Genome-scale RNAi profiling of cell division in human tissue culture cells. Nat Cell Biol 2007, 9:1401-1412.
    • (2007) Nat Cell Biol , vol.9 , pp. 1401-1412
    • Kittler, R.1    Pelletier, L.2    Heninger, A.K.3
  • 16
    • 51649095289 scopus 로고    scopus 로고
    • RNA interference screen for human genes associated with West Nile virus infection
    • Krishnan M.N., Ng A., Sukumaran B., et al. RNA interference screen for human genes associated with West Nile virus infection. Nature 2008, 455:242-245.
    • (2008) Nature , vol.455 , pp. 242-245
    • Krishnan, M.N.1    Ng, A.2    Sukumaran, B.3
  • 17
    • 33846862405 scopus 로고    scopus 로고
    • High-throughput mapping of the chromatin structure of human promoters
    • Ozsolak F., Song J.S., Liu X.S., et al. High-throughput mapping of the chromatin structure of human promoters. Nat Biotechnol 2007, 25:244-248.
    • (2007) Nat Biotechnol , vol.25 , pp. 244-248
    • Ozsolak, F.1    Song, J.S.2    Liu, X.S.3
  • 18
    • 0028789793 scopus 로고
    • Serial analysis of gene-expression
    • Velculescu V.E., Zhang L., Vogelstein B., et al. Serial analysis of gene-expression. Science 1995, 270:484-487.
    • (1995) Science , vol.270 , pp. 484-487
    • Velculescu, V.E.1    Zhang, L.2    Vogelstein, B.3
  • 19
    • 57749195712 scopus 로고    scopus 로고
    • RNA-Seq: a revolutionary tool for transcriptomics
    • Wang Z., Gerstein M., Snyder M. RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet 2009, 10:57-63.
    • (2009) Nat Rev Genet , vol.10 , pp. 57-63
    • Wang, Z.1    Gerstein, M.2    Snyder, M.3
  • 20
    • 46249103973 scopus 로고    scopus 로고
    • Stem cell transcriptome profiling via massive-scale mRNA sequencing
    • Cloonan N., Forrest A.R., Kolle G., et al. Stem cell transcriptome profiling via massive-scale mRNA sequencing. Nat Methods 2008, 5:613-619.
    • (2008) Nat Methods , vol.5 , pp. 613-619
    • Cloonan, N.1    Forrest, A.R.2    Kolle, G.3
  • 21
    • 47949084846 scopus 로고    scopus 로고
    • Profiling the HeLa S3 transcriptome using randomly primed cDNA and massively parallel short-read sequencing
    • Morin R.D., Bainbridge M., Fejes A., et al. Profiling the HeLa S3 transcriptome using randomly primed cDNA and massively parallel short-read sequencing. Biotechniques 2008, 45:81-94.
    • (2008) Biotechniques , vol.45 , pp. 81-94
    • Morin, R.D.1    Bainbridge, M.2    Fejes, A.3
  • 22
    • 11144358198 scopus 로고    scopus 로고
    • A gene atlas of the mouse and human protein-encoding transcriptomes
    • Su A.I., Wiltshire T., Batalov S., et al. A gene atlas of the mouse and human protein-encoding transcriptomes. Proc Natl Acad Sci U S A 2004, 101:6062-6067.
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 6062-6067
    • Su, A.I.1    Wiltshire, T.2    Batalov, S.3
  • 23
    • 0034680102 scopus 로고    scopus 로고
    • Molecular portraits of human breast tumours
    • Perou C.M., et al. Molecular portraits of human breast tumours. Nature 2000, 406:747-752.
    • (2000) Nature , vol.406 , pp. 747-752
    • Perou, C.M.1
  • 24
    • 0036275126 scopus 로고    scopus 로고
    • BeadArray technology: enabling an accurate, cost-effective approach to high-throughput genotyping
    • Oliphant A., et al. BeadArray technology: enabling an accurate, cost-effective approach to high-throughput genotyping. Biotechniques 2002, (32):S56-S61.
    • (2002) Biotechniques , Issue.32
    • Oliphant, A.1
  • 25
    • 33745279056 scopus 로고    scopus 로고
    • Evaluating coverage of genome-wide association studies
    • Barrett J.C., Cardon L.R. Evaluating coverage of genome-wide association studies. Nat Genet 2006, 38:659-662.
    • (2006) Nat Genet , vol.38 , pp. 659-662
    • Barrett, J.C.1    Cardon, L.R.2
  • 26
    • 67149095078 scopus 로고    scopus 로고
    • Designing genome-wide association studies: sample size, power, imputation, and the choice of genotyping chip
    • Spencer C.C., Su Z., Donnelly P., et al. Designing genome-wide association studies: sample size, power, imputation, and the choice of genotyping chip. PLoS Genet 2009, 5:e1000477.
    • (2009) PLoS Genet , vol.5
    • Spencer, C.C.1    Su, Z.2    Donnelly, P.3
  • 27
    • 39649117755 scopus 로고    scopus 로고
    • The impact of next-generation sequencing technology on genetics
    • Mardis E.R. The impact of next-generation sequencing technology on genetics. Trends Genet 2008, 24:133-141.
    • (2008) Trends Genet , vol.24 , pp. 133-141
    • Mardis, E.R.1
  • 28
    • 45549088326 scopus 로고    scopus 로고
    • The transcriptional landscape of the yeast genome defined by RNA sequencing
    • Nagalakshmi U., Wang Z., Waern K., et al. The transcriptional landscape of the yeast genome defined by RNA sequencing. Science 2008, 320:1344-1349.
    • (2008) Science , vol.320 , pp. 1344-1349
    • Nagalakshmi, U.1    Wang, Z.2    Waern, K.3
  • 29
    • 46249096804 scopus 로고    scopus 로고
    • Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution
    • Wilhelm B.T., Marguerat S., Watt S., et al. Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution. Nature 2008, 453:1239U39.
    • (2008) Nature , vol.453
    • Wilhelm, B.T.1    Marguerat, S.2    Watt, S.3
  • 30
    • 46249106990 scopus 로고    scopus 로고
    • Mapping and quantifying mammalian transcriptomes by RNA-Seq
    • Mortazavi A., Williams B.A., McCue K., et al. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods 2008, 5:621-628.
    • (2008) Nat Methods , vol.5 , pp. 621-628
    • Mortazavi, A.1    Williams, B.A.2    McCue, K.3
  • 31
    • 50649089207 scopus 로고    scopus 로고
    • RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays
    • Marioni J.C., Mason C.E., Mane S.M., et al. RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. Genome Res 2008, 18:1509-1517.
    • (2008) Genome Res , vol.18 , pp. 1509-1517
    • Marioni, J.C.1    Mason, C.E.2    Mane, S.M.3
  • 32
    • 0036081355 scopus 로고    scopus 로고
    • Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
    • Edgar R., Domrachev M., Lash A.E. Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res 2002, 30:207-210.
    • (2002) Nucleic Acids Res , vol.30 , pp. 207-210
    • Edgar, R.1    Domrachev, M.2    Lash, A.E.3
  • 34
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: kyoto encyclopedia of genes and genomes
    • Kanehisa M., Goto S. KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res 2000, 28:27-30.
    • (2000) Nucleic Acids Res , vol.28 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 35
    • 0034069495 scopus 로고    scopus 로고
    • Gene ontology: tool for the unification of biology. The Gene Ontology Consortium
    • Ashburner M., Ball C.A., Blake J.A., et al. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 2000, 25:25-29.
    • (2000) Nat Genet , vol.25 , pp. 25-29
    • Ashburner, M.1    Ball, C.A.2    Blake, J.A.3
  • 36
    • 0035755351 scopus 로고    scopus 로고
    • Integrating genotype and phenotype information: an overview of the PharmGKB project. Pharmacogenetics Research Network and Knowledge Base
    • Klein T.E., Chang J.T., Cho M.K., et al. Integrating genotype and phenotype information: an overview of the PharmGKB project. Pharmacogenetics Research Network and Knowledge Base. Pharmacogenomics J 2001, 1:167-170.
    • (2001) Pharmacogenomics J , vol.1 , pp. 167-170
    • Klein, T.E.1    Chang, J.T.2    Cho, M.K.3
  • 37
    • 0036088133 scopus 로고    scopus 로고
    • DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions
    • Xenarios I., Salwínski L., Duan X.J., et al. DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions. Nucleic Acids Res 2002, 30:303-305.
    • (2002) Nucleic Acids Res , vol.30 , pp. 303-305
    • Xenarios, I.1    Salwínski, L.2    Duan, X.J.3
  • 38
    • 0037245913 scopus 로고    scopus 로고
    • BIND: the Biomolecular Interaction Network Database
    • Bader G., Betel D., Hogue C. BIND: the Biomolecular Interaction Network Database. Nucleic Acids Res 2003, 31:248-250.
    • (2003) Nucleic Acids Res , vol.31 , pp. 248-250
    • Bader, G.1    Betel, D.2    Hogue, C.3
  • 39
    • 0034666108 scopus 로고    scopus 로고
    • STRING: a web-server to retrieve and display the repeatedly occurring neighbourhood of a gene
    • Snel B., Lehmann G., Bork P., et al. STRING: a web-server to retrieve and display the repeatedly occurring neighbourhood of a gene. Nucleic Acids Res 2000, 28:3442-3444.
    • (2000) Nucleic Acids Res , vol.28 , pp. 3442-3444
    • Snel, B.1    Lehmann, G.2    Bork, P.3
  • 40
    • 0036500993 scopus 로고    scopus 로고
    • Systems biology: a brief overview
    • Kitano H. Systems biology: a brief overview. Science 2002, 295:1662-1664.
    • (2002) Science , vol.295 , pp. 1662-1664
    • Kitano, H.1
  • 42
    • 33749506763 scopus 로고    scopus 로고
    • From in vivo to in silico biology and back
    • Di Ventura B., Lemerle C., Michalodimitrakis K., et al. From in vivo to in silico biology and back. Nature 2006, 443:527-533.
    • (2006) Nature , vol.443 , pp. 527-533
    • Di Ventura, B.1    Lemerle, C.2    Michalodimitrakis, K.3
  • 43
    • 0038175144 scopus 로고    scopus 로고
    • GoMiner: a resource for biological interpretation of genomic and proteomic data
    • Zeeberg B.R., Feng W., Wang G., et al. GoMiner: a resource for biological interpretation of genomic and proteomic data. Genome Biol 2003, 4:R28.
    • (2003) Genome Biol , vol.4
    • Zeeberg, B.R.1    Feng, W.2    Wang, G.3
  • 44
    • 23044478689 scopus 로고    scopus 로고
    • High-throughput GoMiner, an 'industrial-strength' integrative gene ontology tool for interpretation of multiple-microarray experiments, with application to studies of common variable immune deficiency (CVID)
    • Zeeberg B.R., Qin H., Narasimhan S., et al. High-throughput GoMiner, an 'industrial-strength' integrative gene ontology tool for interpretation of multiple-microarray experiments, with application to studies of common variable immune deficiency (CVID). BMC Bioinformatics 2005, 6:168.
    • (2005) BMC Bioinformatics , vol.6 , pp. 168
    • Zeeberg, B.R.1    Qin, H.2    Narasimhan, S.3
  • 45
    • 27344435774 scopus 로고    scopus 로고
    • Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles
    • Subramanian A., Tamayo P., Mootha V.K., et al. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A 2005, 102:15545-15550.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 15545-15550
    • Subramanian, A.1    Tamayo, P.2    Mootha, V.K.3
  • 46
    • 29144435996 scopus 로고    scopus 로고
    • Computational modelling of the receptor-tyrosine-kinase-activated MAPK pathway
    • Orton R.J., Sturm O.E., Vyshemirsky V., et al. Computational modelling of the receptor-tyrosine-kinase-activated MAPK pathway. Biochem J 2005, 392:249-261.
    • (2005) Biochem J , vol.392 , pp. 249-261
    • Orton, R.J.1    Sturm, O.E.2    Vyshemirsky, V.3
  • 47
    • 63449085311 scopus 로고    scopus 로고
    • Computationally driven, quantitative experiments discover genes required for mitochondrial biogenesis
    • Hess D.C., Myers C.L., Huttenhower C., et al. Computationally driven, quantitative experiments discover genes required for mitochondrial biogenesis. PLoS Genet 2009, 5:e1000407.
    • (2009) PLoS Genet , vol.5
    • Hess, D.C.1    Myers, C.L.2    Huttenhower, C.3
  • 48
    • 66449120271 scopus 로고    scopus 로고
    • Exploring the human genome with functional maps
    • Huttenhower C., Haley E.M., Hibbs M.A., et al. Exploring the human genome with functional maps. Genome Res 2009, 19:1093-1106.
    • (2009) Genome Res , vol.19 , pp. 1093-1106
    • Huttenhower, C.1    Haley, E.M.2    Hibbs, M.A.3
  • 49
    • 7944223653 scopus 로고    scopus 로고
    • A conserved Mis12 centromere complex is linked to heterochromatic HP1 and outer kinetochore protein Zwint-1
    • Obuse C., Iwasaki O., Kiyomitsu T., et al. A conserved Mis12 centromere complex is linked to heterochromatic HP1 and outer kinetochore protein Zwint-1. Nat Cell Biol 2004, 6:1135U37.
    • (2004) Nat Cell Biol , vol.6
    • Obuse, C.1    Iwasaki, O.2    Kiyomitsu, T.3
  • 50
    • 0034121266 scopus 로고    scopus 로고
    • HZwint-1,a novel human kinetochore component that interacts with HZW10
    • Starr D.A., Saffery R., Li Z., et al. HZwint-1,a novel human kinetochore component that interacts with HZW10. J Cell Sci 2000, 113:1939-1950.
    • (2000) J Cell Sci , vol.113 , pp. 1939-1950
    • Starr, D.A.1    Saffery, R.2    Li, Z.3
  • 51
    • 19944427982 scopus 로고    scopus 로고
    • Human Zwint-1 specifies localization of zeste white 10 to kinetochores and is essential for mitotic checkpoint signaling
    • Wang H.M., Hu X., Ding X., et al. Human Zwint-1 specifies localization of zeste white 10 to kinetochores and is essential for mitotic checkpoint signaling. J Biol Chem 2004, 279:54590-54598.
    • (2004) J Biol Chem , vol.279 , pp. 54590-54598
    • Wang, H.M.1    Hu, X.2    Ding, X.3
  • 52
    • 0038492417 scopus 로고    scopus 로고
    • A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae)
    • Troyanskaya O.G., Dolinski K., Owen A.B., et al. A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae). Proc Natl Acad Sci U S A 2003, 100:8348-8353.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 8348-8353
    • Troyanskaya, O.G.1    Dolinski, K.2    Owen, A.B.3
  • 53
    • 0142052944 scopus 로고    scopus 로고
    • A Bayesian networks approach for predicting protein-protein interactions from genomic data
    • Jansen R., Yu H., Greenbaum D., et al. A Bayesian networks approach for predicting protein-protein interactions from genomic data. Science 2003, 302:449-453.
    • (2003) Science , vol.302 , pp. 449-453
    • Jansen, R.1    Yu, H.2    Greenbaum, D.3
  • 54
    • 9444239213 scopus 로고    scopus 로고
    • A probabilistic functional network of yeast genes
    • Lee I., Date S.V., Adai A.T., et al. A probabilistic functional network of yeast genes. Science 2004, 306:1555-1558.
    • (2004) Science , vol.306 , pp. 1555-1558
    • Lee, I.1    Date, S.V.2    Adai, A.T.3
  • 55
    • 33745113181 scopus 로고    scopus 로고
    • Discovery of biological networks from diverse functional genomic data
    • Myers C., Robson D., Wible A., et al. Discovery of biological networks from diverse functional genomic data. Genome Biol 2005, 6:R114.
    • (2005) Genome Biol , vol.6
    • Myers, C.1    Robson, D.2    Wible, A.3
  • 56
    • 2342648924 scopus 로고    scopus 로고
    • Integrating high-throughput and computational data elucidates bacterial networks
    • Covert M.W., Knight E.M., Reed J.L., et al. Integrating high-throughput and computational data elucidates bacterial networks. Nature 2004, 429:92-96.
    • (2004) Nature , vol.429 , pp. 92-96
    • Covert, M.W.1    Knight, E.M.2    Reed, J.L.3
  • 57
    • 45149106353 scopus 로고    scopus 로고
    • Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks
    • Zhu J., Zhang B., Smith E.N., et al. Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks. Nat Genet 2008, 40:854-861.
    • (2008) Nat Genet , vol.40 , pp. 854-861
    • Zhu, J.1    Zhang, B.2    Smith, E.N.3
  • 58
    • 67650895858 scopus 로고    scopus 로고
    • Global prediction of tissue-specific gene expression and context-dependent gene networks in Caenorhabditis elegans
    • Chikina M.D., Huttenhower C., Murphy C.T., et al. Global prediction of tissue-specific gene expression and context-dependent gene networks in Caenorhabditis elegans. PLoS Comput Biol 2009, 5:e1000417.
    • (2009) PLoS Comput Biol , vol.5
    • Chikina, M.D.1    Huttenhower, C.2    Murphy, C.T.3
  • 59
    • 33748513704 scopus 로고    scopus 로고
    • Finding function: evaluation methods for functional genomic data
    • Myers C.L., Barrett D.R., Hibbs M.A., et al. Finding function: evaluation methods for functional genomic data. BMC Genomics 2006, 7:187.
    • (2006) BMC Genomics , vol.7 , pp. 187
    • Myers, C.L.1    Barrett, D.R.2    Hibbs, M.A.3
  • 60
    • 4644306020 scopus 로고    scopus 로고
    • Analyzing protein function on a genomic scale: the importance of gold-standard positives and negatives for network prediction
    • Jansen R., Gerstein M. Analyzing protein function on a genomic scale: the importance of gold-standard positives and negatives for network prediction. Curr Opin Microbiol 2004, 7:535-545.
    • (2004) Curr Opin Microbiol , vol.7 , pp. 535-545
    • Jansen, R.1    Gerstein, M.2
  • 61
    • 24044434446 scopus 로고    scopus 로고
    • Filtering high-throughput protein-protein interaction data using a combination of genomic features
    • Patil A., Nakamura H. Filtering high-throughput protein-protein interaction data using a combination of genomic features. BMC Bioinformatics 2005, 6:100.
    • (2005) BMC Bioinformatics , vol.6 , pp. 100
    • Patil, A.1    Nakamura, H.2
  • 62
    • 20144387067 scopus 로고    scopus 로고
    • The MIPS mammalian protein-protein interaction database
    • Pagel P., Kovac S., Oesterheld M., et al. The MIPS mammalian protein-protein interaction database. Bioinformatics 2005, 21:832-834.
    • (2005) Bioinformatics , vol.21 , pp. 832-834
    • Pagel, P.1    Kovac, S.2    Oesterheld, M.3
  • 63
    • 0037245913 scopus 로고    scopus 로고
    • BIND: the Biomolecular Interaction Network Database
    • Bader G.D., Betel D., Hogue C.W. BIND: the Biomolecular Interaction Network Database. Nucleic Acids Res 2003, 31:248-250.
    • (2003) Nucleic Acids Res , vol.31 , pp. 248-250
    • Bader, G.D.1    Betel, D.2    Hogue, C.W.3
  • 64
    • 0038005018 scopus 로고    scopus 로고
    • DAVID: Database for Annotation, Visualization, and Integrated Discovery
    • Dennis G., Sherman B.T., Hosack D.A., et al. DAVID: Database for Annotation, Visualization, and Integrated Discovery. Genome Biol 2003, 4:P3.
    • (2003) Genome Biol , vol.4
    • Dennis, G.1    Sherman, B.T.2    Hosack, D.A.3
  • 65
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang D.W., Sherman B.T., Lempicki R.A. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protocols 2009, 4:44-57.
    • (2009) Nat Protocols , vol.4 , pp. 44-57
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 66
    • 0242559054 scopus 로고    scopus 로고
    • Pathway studio-the analysis and navigation of molecular networks
    • Nikitin A., Egorov S., Daraselia N., et al. Pathway studio-the analysis and navigation of molecular networks. Bioinformatics 2003, 19:2155-2157.
    • (2003) Bioinformatics , vol.19 , pp. 2155-2157
    • Nikitin, A.1    Egorov, S.2    Daraselia, N.3
  • 67
    • 13344278672 scopus 로고    scopus 로고
    • Content-rich biological network constructed by mining PubMed abstracts
    • Chen H., Sharp B. Content-rich biological network constructed by mining PubMed abstracts. BMC Bioinformatics 2004, 5:147.
    • (2004) BMC Bioinformatics , vol.5 , pp. 147
    • Chen, H.1    Sharp, B.2
  • 68
    • 63549126161 scopus 로고    scopus 로고
    • Directing experimental biology: a case study in mitochondrial biogenesis
    • Hibbs M.A., Myers C.L., Huttenhower C., et al. Directing experimental biology: a case study in mitochondrial biogenesis. PLoS Comput Biol 2009, 5:e1000322.
    • (2009) PLoS Comput Biol , vol.5
    • Hibbs, M.A.1    Myers, C.L.2    Huttenhower, C.3
  • 69
    • 34548749776 scopus 로고    scopus 로고
    • Context-sensitive data integration and prediction of biological networks
    • Myers C.L., Troyanskaya O.G. Context-sensitive data integration and prediction of biological networks. Bioinformatics 2007, 23:2322-2330.
    • (2007) Bioinformatics , vol.23 , pp. 2322-2330
    • Myers, C.L.1    Troyanskaya, O.G.2
  • 70
    • 0033607520 scopus 로고    scopus 로고
    • The role of human MBF1 as a transcriptional coactivator
    • Kabe Y., Goto M., Shima D., et al. The role of human MBF1 as a transcriptional coactivator. J Biol Chem 1999, 274:34196-34202.
    • (1999) J Biol Chem , vol.274 , pp. 34196-34202
    • Kabe, Y.1    Goto, M.2    Shima, D.3
  • 71
    • 0036712421 scopus 로고    scopus 로고
    • Genome-wide detection of tissue-specific alternative splicing in the human transcriptome
    • Xu Q., Modrek B., Lee C. Genome-wide detection of tissue-specific alternative splicing in the human transcriptome. Nucleic Acids Res 2002, 30:3754-3766.
    • (2002) Nucleic Acids Res , vol.30 , pp. 3754-3766
    • Xu, Q.1    Modrek, B.2    Lee, C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.