메뉴 건너뛰기




Volumn 38, Issue 18, 2010, Pages 6301-6311

Perturbations in nucleosome structure from heavy metal association

Author keywords

[No Author keywords available]

Indexed keywords

CESIUM; COBALT; GUANINE; HEAVY METAL; MANGANESE; NICKEL; RUBIDIUM; DNA; HISTIDINE; HISTONE; MONOVALENT CATION; PURINE DERIVATIVE;

EID: 78049429537     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkq420     Document Type: Article
Times cited : (34)

References (42)
  • 1
    • 0037093676 scopus 로고    scopus 로고
    • Oxidative DNA and protein damage in metal-induced toxicity and carcinogenesis
    • Kasprzak,K.S. (2002) Oxidative DNA and protein damage in metal-induced toxicity and carcinogenesis. Free Radic. Biol. Med., 32, 958-967.
    • (2002) Free Radic. Biol. Med. , vol.32 , pp. 958-967
    • Kasprzak, K.S.1
  • 2
    • 0036569447 scopus 로고    scopus 로고
    • The role of metals in site-specific DNA damage with reference to carcinogenesis
    • Kawanishi,S., Hiraku,Y., Murata,M. and Oikawa,S. (2002) The role of metals in site-specific DNA damage with reference to carcinogenesis. Free Radic. Biol. Med., 32, 822-832.
    • (2002) Free Radic. Biol. Med. , vol.32 , pp. 822-832
    • Kawanishi, S.1    Hiraku, Y.2    Murata, M.3    Oikawa, S.4
  • 3
    • 0037186889 scopus 로고    scopus 로고
    • Induction of oxidative DNA damage by carcinogenic metals
    • Bal,W. and Kasprzak,K.S. (2002) Induction of oxidative DNA damage by carcinogenic metals. Toxicol. Lett., 127, 55-62.
    • (2002) Toxicol. Lett. , vol.127 , pp. 55-62
    • Bal, W.1    Kasprzak, K.S.2
  • 4
    • 18544371009 scopus 로고    scopus 로고
    • Metals, toxicity and oxidative stress
    • Valko,M., Morris,H. and Cronin,M.T. (2005) Metals, toxicity and oxidative stress. Curr. Med. Chem., 12, 1161-1208.
    • (2005) Curr. Med. Chem. , vol.12 , pp. 1161-1208
    • Valko, M.1    Morris, H.2    Cronin, M.T.3
  • 5
    • 48749096008 scopus 로고    scopus 로고
    • Carcinogenic metal compounds: recent insight into molecular and cellular mechanisms
    • Beyersmann,D. and Hartwig,A. (2008) Carcinogenic metal compounds: recent insight into molecular and cellular mechanisms. Arch. Toxicol., 82, 493-512.
    • (2008) Arch. Toxicol. , vol.82 , pp. 493-512
    • Beyersmann, D.1    Hartwig, A.2
  • 6
    • 38949195955 scopus 로고    scopus 로고
    • Genetic and epigenetic mechanisms in metal carcinogenesis and cocarcinogenesis: nickel, arsenic, and chromium
    • Salnikow,K. and Zhitkovich,A. (2008) Genetic and epigenetic mechanisms in metal carcinogenesis and cocarcinogenesis: nickel, arsenic, and chromium. Chem. Res. Toxicol., 21, 28-44.
    • (2008) Chem. Res. Toxicol. , vol.21 , pp. 28-44
    • Salnikow, K.1    Zhitkovich, A.2
  • 7
    • 70350665844 scopus 로고    scopus 로고
    • Epigenetics in metal carcinogenesis: nickel, arsenic, chromium and cadmium
    • Arita,A. and Costa,M. (2009) Epigenetics in metal carcinogenesis: nickel, arsenic, chromium and cadmium. Metallomics, 1, 222-228.
    • (2009) Metallomics , vol.1 , pp. 222-228
    • Arita, A.1    Costa, M.2
  • 8
    • 61649084200 scopus 로고    scopus 로고
    • Metal-induced carcinogenesis, oxidative stress and hypoxia signalling
    • Galanis,A., Karapetsas,A. and Sandaltzopoulos,R. (2009) Metal-induced carcinogenesis, oxidative stress and hypoxia signalling. Mutat. Res., 674, 31-35.
    • (2009) Mutat. Res. , vol.674 , pp. 31-35
    • Galanis, A.1    Karapetsas, A.2    Sandaltzopoulos, R.3
  • 9
    • 0026410002 scopus 로고
    • Structural aspects of metal liganding to functional groups in proteins
    • Glusker,J.P. (1991) Structural aspects of metal liganding to functional groups in proteins. Adv. Protein Chem., 42, 1-76.
    • (1991) Adv. Protein Chem. , vol.42 , pp. 1-76
    • Glusker, J.P.1
  • 10
    • 0842338715 scopus 로고
    • Mn2+ and other transition metals at low concentration induce the right-to-left helical transformation of poly[d(G-C)]
    • van de Sande,J.H., McIntosh,L.P. and Jovin,T.M. (1982) Mn2+ and other transition metals at low concentration induce the right-to-left helical transformation of poly[d(G-C)]. EMBO J., 1, 777-782.
    • (1982) EMBO J. , vol.1 , pp. 777-782
    • van de Sande, J.H.1    McIntosh, L.P.2    Jovin, T.M.3
  • 11
    • 0028867365 scopus 로고
    • Raman spectroscopy of DNA-metal complexes. II. The thermal denaturation of DNA in the presence of Sr2+, Ba2+, Mg2+, Ca2+, Mn2+, Co2+, Ni2+, and Cd2+
    • Duguid,J.G., Bloomfield,V.A., Benevides,J.M. and Thomas,G.J. Jr. (1995) Raman spectroscopy of DNA-metal complexes. II. The thermal denaturation of DNA in the presence of Sr2+, Ba2+, Mg2+, Ca2+, Mn2+, Co2+, Ni2+, and Cd2+. Biophys. J., 69, 2623-2641.
    • (1995) Biophys. J. , vol.69 , pp. 2623-2641
    • Duguid, J.G.1    Bloomfield, V.A.2    Benevides, J.M.3    Thomas G.J., Jr.4
  • 12
    • 0033581166 scopus 로고    scopus 로고
    • Manganese as a replacement for magnesium and zinc: functional comparison of divalent ions
    • Bock,C.W., Katz,A.K., Markham,G.D. and Glusker,J.P. (1999) Manganese as a replacement for magnesium and zinc: functional comparison of divalent ions. J. Am. Chem. Soc., 121, 7360-7372.
    • (1999) J. Am. Chem. Soc. , vol.121 , pp. 7360-7372
    • Bock, C.W.1    Katz, A.K.2    Markham, G.D.3    Glusker, J.P.4
  • 13
    • 0037143629 scopus 로고    scopus 로고
    • DNA-dependent divalent cation binding in the nucleosome core particle
    • Davey,C.A. and Richmond,T.J. (2002) DNA-dependent divalent cation binding in the nucleosome core particle. Proc. Natl Acad. Sci. USA, 99, 11169-11174.
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 11169-11174
    • Davey, C.A.1    Richmond, T.J.2
  • 14
    • 77952306453 scopus 로고    scopus 로고
    • Using soft X-rays for a detailed picture of divalent metal binding in the nucleosome
    • Wu,B. and Davey,C.A. (2010) Using soft X-rays for a detailed picture of divalent metal binding in the nucleosome. J. Mol. Biol., 398, 633-640.
    • (2010) J. Mol. Biol. , vol.398 , pp. 633-640
    • Wu, B.1    Davey, C.A.2
  • 15
    • 38349078193 scopus 로고    scopus 로고
    • Site selectivity of platinum anticancer therapeutics
    • Wu,B., Droge,P. and Davey,C.A. (2008) Site selectivity of platinum anticancer therapeutics. Nat. Chem. Biol., 4, 110-112.
    • (2008) Nat. Chem. Biol. , vol.4 , pp. 110-112
    • Wu, B.1    Droge, P.2    Davey, C.A.3
  • 16
    • 0033039285 scopus 로고    scopus 로고
    • Preparation of nucleosome core particle from recombinant histones
    • Luger,K., Rechsteiner,T.J. and Richmond,T.J. (1999) Preparation of nucleosome core particle from recombinant histones. Methods Enzymol., 304, 3-19.
    • (1999) Methods Enzymol. , vol.304 , pp. 3-19
    • Luger, K.1    Rechsteiner, T.J.2    Richmond, T.J.3
  • 17
    • 0036307707 scopus 로고    scopus 로고
    • Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 Å resolution
    • Davey,C.A., Sargent,D.F., Luger,K., Maeder,A.W. and Richmond,T.J. (2002) Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 Å resolution. J. Mol. Biol., 319, 1097-1113.
    • (2002) J. Mol. Biol. , vol.319 , pp. 1097-1113
    • Davey, C.A.1    Sargent, D.F.2    Luger, K.3    Maeder, A.W.4    Richmond, T.J.5
  • 18
    • 34147191973 scopus 로고    scopus 로고
    • DNA stretching and extreme kinking in the nucleosome core
    • Ong,M.S., Richmond,T.J. and Davey,C.A. (2007) DNA stretching and extreme kinking in the nucleosome core. J. Mol. Biol., 368, 1067-1074.
    • (2007) J. Mol. Biol. , vol.368 , pp. 1067-1074
    • Ong, M.S.1    Richmond, T.J.2    Davey, C.A.3
  • 19
    • 33644874235 scopus 로고    scopus 로고
    • The integration of macromolecular diffraction data. Acta Crystallogr
    • Leslie,A.G. (2006) The integration of macromolecular diffraction data. Acta Crystallogr. D Biol. Crystallogr., 62, 48-57.
    • (2006) D Biol. Crystallogr. , vol.62 , pp. 48-57
    • Leslie, A.G.1
  • 20
    • 0028103275 scopus 로고
    • The CCP4 suite: programs for protein crystallography
    • CCP4
    • CCP4. (1994) The CCP4 suite: programs for protein crystallography. Acta Crystallogr. D Biol. Crystallogr., 50, 760-763.
    • (1994) Acta Crystallogr. D Biol. Crystallogr. , vol.50 , pp. 760-763
  • 21
    • 0024058085 scopus 로고
    • The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids
    • Lavery,R. and Sklenar,H. (1988) The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids. J. Biomol. Struct. Dyn., 6, 63-91.
    • (1988) J. Biomol. Struct. Dyn. , vol.6 , pp. 63-91
    • Lavery, R.1    Sklenar, H.2
  • 22
    • 0031058883 scopus 로고    scopus 로고
    • Phase determination from multiwavelength anomalous diffraction measurements
    • Hendrickson,W.A. and Ogata,C.M. (1997) Phase determination from multiwavelength anomalous diffraction measurements. Methods Enzymol., 276, 494-523.
    • (1997) Methods Enzymol. , vol.276 , pp. 494-523
    • Hendrickson, W.A.1    Ogata, C.M.2
  • 24
    • 0034714010 scopus 로고    scopus 로고
    • 1 A crystal structures of B-DNA reveal sequence-specific binding and groove-specific bending of DNA by magnesium and calcium
    • Chiu,T.K. and Dickerson,R.E. (2000) 1 A crystal structures of B-DNA reveal sequence-specific binding and groove-specific bending of DNA by magnesium and calcium. J. Mol. Biol., 301, 915-945.
    • (2000) J. Mol. Biol. , vol.301 , pp. 915-945
    • Chiu, T.K.1    Dickerson, R.E.2
  • 25
    • 20444462007 scopus 로고    scopus 로고
    • Alteration of the nucleosomal DNA path in the crystal structure of a human nucleosome core particle
    • Tsunaka,Y., Kajimura,N., Tate,S. and Morikawa,K. (2005) Alteration of the nucleosomal DNA path in the crystal structure of a human nucleosome core particle. Nucleic Acids Res., 33, 3424-3434.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 3424-3434
    • Tsunaka, Y.1    Kajimura, N.2    Tate, S.3    Morikawa, K.4
  • 28
    • 71549115853 scopus 로고    scopus 로고
    • Inhibition of transcription by platinum antitumor compounds
    • Todd,R.C. and Lippard,S.J. (2009) Inhibition of transcription by platinum antitumor compounds. Metallomics, 1, 280-291.
    • (2009) Metallomics , vol.1 , pp. 280-291
    • Todd, R.C.1    Lippard, S.J.2
  • 29
    • 24644456464 scopus 로고    scopus 로고
    • Platinum anticancer drug damage enforces a particular rotational setting of DNA in nucleosomes
    • Danford,A.J., Wang,D., Wang,Q., Tullius,T.D. and Lippard,S.J. (2005) Platinum anticancer drug damage enforces a particular rotational setting of DNA in nucleosomes. Proc. Natl Acad. Sci. USA, 102, 12311-12316.
    • (2005) Proc. Natl Acad. Sci. USA , vol.102 , pp. 12311-12316
    • Danford, A.J.1    Wang, D.2    Wang, Q.3    Tullius, T.D.4    Lippard, S.J.5
  • 30
    • 34249017926 scopus 로고    scopus 로고
    • Cisplatin damage overrides the predefined rotational setting of positioned nucleosomes
    • Ober,M. and Lippard,S.J. (2007) Cisplatin damage overrides the predefined rotational setting of positioned nucleosomes. J. Am. Chem. Soc., 129, 6278-6286.
    • (2007) J. Am. Chem. Soc. , vol.129 , pp. 6278-6286
    • Ober, M.1    Lippard, S.J.2
  • 31
    • 40949150673 scopus 로고    scopus 로고
    • A,1,2-d(GpG) cisplatin intrastrand cross-link influences the rotational and translational setting of DNA in nucleosomes
    • Ober,M. and Lippard,S.J. (2008) A 1,2-d(GpG) cisplatin intrastrand cross-link influences the rotational and translational setting of DNA in nucleosomes. J. Am. Chem. Soc., 130, 2851-2861.
    • (2008) J. Am. Chem. Soc. , vol.130 , pp. 2851-2861
    • Ober, M.1    Lippard, S.J.2
  • 32
    • 53649102858 scopus 로고    scopus 로고
    • Platinum drug adduct formation in the nucleosome core alters nucleosome mobility but not positioning
    • Wu,B. and Davey,C.A. (2008) Platinum drug adduct formation in the nucleosome core alters nucleosome mobility but not positioning. Chem. Biol., 15, 1023-1028.
    • (2008) Chem. Biol. , vol.15 , pp. 1023-1028
    • Wu, B.1    Davey, C.A.2
  • 33
    • 0037992395 scopus 로고    scopus 로고
    • The structure of DNA in the nucleosome core
    • Richmond,T.J. and Davey,C.A. (2003) The structure of DNA in the nucleosome core. Nature, 423, 145-150.
    • (2003) Nature , vol.423 , pp. 145-150
    • Richmond, T.J.1    Davey, C.A.2
  • 35
    • 77951242466 scopus 로고    scopus 로고
    • DNA stretching in the nucleosome facilitates alkylation by an intercalating antitumour agent
    • Davey,G.E., Wu,B., Dong,Y., Surana,U. and Davey,C.A. (2010) DNA stretching in the nucleosome facilitates alkylation by an intercalating antitumour agent. Nucleic Acids Res., 38, 2081-2088.
    • (2010) Nucleic Acids Res. , vol.38 , pp. 2081-2088
    • Davey, G.E.1    Wu, B.2    Dong, Y.3    Surana, U.4    Davey, C.A.5
  • 37
    • 0032760667 scopus 로고    scopus 로고
    • DNA distortion as a factor in nucleosome positioning
    • Fitzgerald,D.J. and Anderson,J.N. (1999) DNA distortion as a factor in nucleosome positioning. J. Mol. Biol., 293, 477-491.
    • (1999) J. Mol. Biol. , vol.293 , pp. 477-491
    • Fitzgerald, D.J.1    Anderson, J.N.2
  • 38
    • 34447643262 scopus 로고    scopus 로고
    • Nucleosome positioning determinants
    • Fernandez,A.G. and Anderson,J.N. (2007) Nucleosome positioning determinants. J. Mol. Biol., 371, 649-668.
    • (2007) J. Mol. Biol. , vol.371 , pp. 649-668
    • Fernandez, A.G.1    Anderson, J.N.2
  • 39
    • 77951639211 scopus 로고    scopus 로고
    • Structural insight into the sequence dependence of nucleosome positioning
    • Wu,B., Mohideen,K., Vasudevan,D. and Davey,C.A. (2010) Structural insight into the sequence dependence of nucleosome positioning. Structure, 18, 528-536.
    • (2010) Structure , vol.18 , pp. 528-536
    • Wu, B.1    Mohideen, K.2    Vasudevan, D.3    Davey, C.A.4
  • 42
    • 0034614483 scopus 로고    scopus 로고
    • Sequence-dependent DNA structure: dinucleotide conformational maps
    • Packer,M.J., Dauncey,M.P. and Hunter,C.A. (2000) Sequence-dependent DNA structure: dinucleotide conformational maps. J. Mol. Biol., 295, 71-83.
    • (2000) J. Mol. Biol. , vol.295 , pp. 71-83
    • Packer, M.J.1    Dauncey, M.P.2    Hunter, C.A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.