Softer and soft X-rays in macromolecular crystallography

Journal of Synchrotron Radiation

Volumn 12, Issue 4, 2005, Pages 410-419

  Carugo, Kristina Djinović ^a,g   Helliwell, John R ^b,c   Stuhrmann, Heinrich ^d,e   Weiss, Manfred S ^f  

^a Structural Biology Laboratory   (Italy)

^b UNIVERSITY OF MANCHESTER   (United Kingdom)

^c DARESBURY LABORATORY   (United Kingdom)

^d INSTITUTE OF MATERIALS RESEARCH   (Germany)

^e INSTITUT DE BIOLOGIE STRUCTURALE   (France)

^f DESY   (Germany)

^g Vienna Biocenter   (Austria)

Author keywords

Anomalous scattering; Long wavelengths (>3.0 ); Longer wavelengths (1.5 3.0 ); Soft x rays (>3.0 ); Softer x rays (1.5 3.0 ); X ray absorption; X ray crystallography

Indexed keywords

ABSORPTION SPECTROSCOPY; MACROMOLECULES; X RAY CRYSTALLOGRAPHY; X RAY DIFFRACTION;

ANOMALOUS SCATTERING; LONGER WAVELENGTHS (1.5-3.0 Å); MACROMOLECULAR CRYSTALLOGRAPHY; SOFT X-RAYS; SOFTER X-RAYS; X-RAY ABSORPTION;

X RAYS;

CHEMICAL MODEL; CHEMISTRY; CONFORMATION; CRYSTALLOGRAPHY; MACROMOLECULE; METHODOLOGY; REVIEW; SPECTROMETRY; X RAY; X RAY CRYSTALLOGRAPHY;

CRYSTALLOGRAPHY; CRYSTALLOGRAPHY, X-RAY; MACROMOLECULAR SUBSTANCES; MODELS, CHEMICAL; MOLECULAR CONFORMATION; SPECTROMETRY, X-RAY EMISSION; X-RAYS;

EID: 23844555607     PISSN: 09090495     EISSN: None     Source Type: Journal    
DOI: 10.1107/S0909049504025762     Document Type: Conference Paper

References (73)

1. Anderson, D. H., Weiss, M. S. & Eisenberg, D. (1996). Acta Cryst. D52, 469-480.
2. Arndt, U. W. (1984). J. Appl. Cryst. 17, 118-119.
3. Behrens, W., Otto, H., Stuhrmann, H. B. & Heyn, M. P. (1998). Biophys. J. 75, 255-263.
4. Biou, V., Boesecke, P., Bois, J.-M., Brandolin, G., Kahn, R., Mas, C., Nauton, L., Nury, H., Pebay-Peyroula, E., Vicat, J. & Stuhrmann, H. B. (2005). J. Synchrotron Rad. 12, 402-409.
5. Blow, D. M. (1958). Proc. R. Soc. A, pp. 302-336.
6. Brown, J., Esnouf, R. M., Jones, M. A., Linnell, J., Harlos, K., Hassan, A. B. & Jones, E. Y. (2002). EMBO J. 21, 1054-1062.
7. Carpentier, P., Berthet-Colominas, C., Capitan, M., Chesne, M.-L., Fanchon, E., Lequien, S., Stuhrmann, H., Thiaudière, D., Vicat, J., Zielinski, P. & Kahn, R. (2000). Cell. Mol. Biol. 46, 915-935.
8. Carpentier, P., Boesecke, P., Bois, J.-M., Chesne, M.-L., Fanchon, E., Kahn, R., Stuhrmann, H. & Vicat, J. (2002). Acta Phys. Pol. 101, 603-612.
9. Chesne, M.-L. (2002). Thesis, Université Joseph Fourier, Grenoble, France.
10. Cianci, M., Antonyuk, S., Bliss, N., Buffey, S. G., Cheung, K. C., Clarke, J. A., Derbyshire, G. E., Ellis, M. J., Enderby, M. J., Grant, A. F., Holbourn, M. P., Laundy, D., Nave, C., Ryder, R., Stephenson, P., Helliwell, J. R. & Hasnain, S. S. (2005). J. Synchrotron Rad. Submitted.
11. Cianci, M., Rizkallah, P. J., Olczak, A., Raftery, J., Chayen, N. E., Zagalsky, P. F. & Helliwell, J. R. (2001). Acta Cryst. D57, 1219-1229.
12. Dauter, Z. & Adamiak, D. A. (2001). Acta Cryst. D57, 990-995.
13. Dauter, Z., Dauter, M., de La Fortelle, E., Bricogne, G. & Sheldrick, G. M. (1999). J. Mol. Biol. 289, 83-92.
14. Dauter, Z., Dauter, M. & Rajashankar, K. R. (2000). Acta Cryst. D56, 232-237.
15. Debreczeni, J. E., Bunkoczi, G., Ma, Q., Blaser, H. & Sheldrick, G. M. (2003). Acta Cryst. D59, 688-696.
16. Duke, E. M. H. (2004). BCA Spring Meeting Conference Abstracts, Manchester, UK.
17. Einspahr, H., Suguna, K., Suddath, F. L., Ellis, G., Helliwell, J. R. & Papiz, M. Z. (1985). Acta Cryst. B41, 336-341.
18. Evans, G. & Bricogne, G. (2002). Acta Cryst. D58, 976-991.
19. Evans, G. & Bricogne, G. (2003). Acta Cryst. D59, 1923-1929.
20. Evans, G., Polentarutti, M., Djinović Carugo, K. & Bricogne, G. (2003). Acta Cryst. D59, 1429-1434.
21. Ferreira, K. N., Iverson, T. M., Maghlaoui, K., Barber, J. & Iwata, S. (2004). Science, 303, 1831-1838.
22. Fourme, R., Shepard, W., Kahn, R., L'Hermite, G. & Li De La Sierra, I. (1995). J. Synchrotron Rad. 2, 36-48.
23. Gordon, E. J., Leonard, G. A., McSweeney, S. & Zagalsky, P. F. (2001). Acta Cryst. D57, 1230-1237.
24. Helliwell, J. R. (1984). Rep. Prog. Phys. 47, 1403-1497.
25. Helliwell, J. R. (1993). Daresbury CCP4 Study Weekend Proceedings DL/Sci/R34, pp. 80-88. CCLRC Daresbury Laboratory, Warrington, UK.
26. Helliwell, J. R. (2004). J. Synchrotron Rad. 11, 1-3.
27. Helliwell, J. R., Ealick, S., Doing, P., Irving, T. & Szebenyi, M. (1993). Acta Cryst. D49, 120-128.
28. Hendrickson, W. A. (1999). J. Synchrotron Rad. 6, 845-851.
29. Hendrickson, W. A. & Ogata, C. M. (1997). Methods Enzymol. 276, 494-523.
30. Hendrickson, W. A., Smith, J. L., Phizackerley, R. P. & Merritt, E. A. (1988). Proteins, 4, 77-88.
31. Hendrickson, W. A. & Teeter, M. M. (1981). Nature (London), 290, 107-113.
32. Kuettner, E. B., Hilgenfeld, R. & Weiss, M. S. (2002). J. Biol. Chem. 277, 46402-46407.
33. Kwiatkowski, W., Noel, J. P. & Choe, S. (2000). J. Appl. Cryst. 33, 876-881.
34. Lehmann, M. S., Müller, H.-H. & Stuhrmann, H. B. (1993). Acta Cryst. D49, 308-310.
35. Li, S., Finley, J., Liu, Z. J., Qiu, S. H., Chen, H., Luan, C. H., Carson, M., Tsao, J., Johnson, D., Lin, G., Zhao, J., Thomas, W., Nagy, L. A., Sha, B., DeLucas, L. J., Wang, B. C. & Luo, M. (2002). J. Biol. Chem. 277, 48596-48601.
36. Liu, Y., Ogata, C. M. & Hendrickson, W. A. (2001). Proc. Natl. Acad. Sci. USA, 98, 10648-10653.
37. Liu, Z.-J., Vysotski, E. S., Chen, C.-J., Rose, J. P., Lee, J. & Wang, B.-C. (2000). Protein Sci. 9, 2085-2093.
38. Miao, J. W., Hodgson, K. O. & Sayre, D. (2001). Proc. Natl. Acad. Sci. USA, 98, 6641-6645.
39. Micossi, E., Hunter, W. N. & Leonard, G. A. (2002). Acta Cryst. D58, 21-28.
40. Mueller-Dieckmann, C., Polentarutti, M., Djinović Carugo, K., Panjikar, S., Tucker, P. A. & Weiss, M. S. (2004). Acta Cryst. D60, 28-38.
41. Murray, J. W., Garman, E. F. & Ravelli, R. B. G. (2004). J. Appl. Cryst. 37, 513-522.
42. Murthy, H. M., Hendrickson, W. A., Orme-Johnson, W. H., Merritt, E. A. & Phizackerley, R. P. (1988). J. Biol. Chem. 263, 18430-18436.
43. Nieh, Y. P. & Helliwell, J. R. (1995). J. Synchrotron Rad. 2, 79-82.
44. Olsen, J. G., Flensburg, C., Olsen, O., Bricogne, G. & Henriksen, A. (2004). Acta Cryst. D60, 250-255.
45. Phillips, J. C. & Hodgson, K. O. (1980). Synchrotron Radiation Research, pp. 565-605, edited by H. Winick and S. Doniach. New York/London: Plenum.
46. Polentarutti, M., Glazer, R. & Djinović Carugo, K. (2004). J. Appl. Cryst. 37, 319-324.
47. Polikarpov, I. (1997). J. Synchrotron Rad. 4, 17-20.
48. Polikarpov, I., Teplyakov, A. & Oliva, G. (1997). Acta Cryst. D53, 734-737.
49. Ramagopal, U. A., Dauter, M. & Dauter, Z. (2003). Acta Cryst. D59, 1020-1027.
50. Ramin, M., Shepard, W., Fourme, R. & Kahn, R. (1999). Acta Cryst. D55, 157-167.
51. Ravelli, R. B., Leiros, H. K., Pan, B., Caffrey, M. & McSweeney, S. (2003). Structure, 11, 217-224.
52. Sauer, O., Roth, M., Schirmer, T., Rummel, G. & Kratky, C. (2002). Acta Cryst. D58, 60-69.
53. Schiltz, M., Kvick, Å., Svensson, O. S., Shepard, W., de La Fortelle, E., Prangé, T., Kahn, R., Bricogne, G. & Fourme, R. (1997). J. Synchrotron Rad. 4, 287-297.
54. Scholl, G., Dauvergne, F., Gabriel, A., Hütsch, M., Marmotti, M., Sayers, S., Stuhrmann, S., Thomas, J., Trame, C. & Stuhrmann, H. B. (1995). Nucl. Instrum. Methods, B97, 303-307.
55. Schuermann, J. P. & Tanner, J. J. (2003). Acta Cryst. D59, 1731-1736.
56. Sekar, K., Rajakannan, V., Velmurugan, D., Yamane, T., Thirumurugan, R., Dauter, M. & Dauter, Z. (2004). Acta Cryst. D60, 1586-1590.
57. Smith, J. L., Hendrickson, W. A. & Addison, A. W. (1983). Nature (London), 303, 86-88.
58. Stuhrmann, S. (1997). Thesis, University of Hamburg, Germany.
59. Stuhrmann, S., Bartels, K. S., Braunwarth, W., Doose, R., Dauvergne, F., Gabriel, A., Knöchel, A., Marmotti, M., Stuhrmann, H. B., Trame, C. & Lehmann, M. S. (1997). J. Synchrotron Rad. 4, 298-310.
60. Stuhrmann, S., Bartels, K. S., Hütsch, M., Marmotti, M., Sayers, Z., Thomas, J., Trame, C. & Stuhrmann, H. B. (1996). Structural Studies of Crystals, pp. 276-288. Moscow: Nauka Fizmatlit. (In Russian.)
61. Stuhrmann, S., Hütsch, M., Trame, C., Thomas, J. & Stuhrmann, H. B. (1995). J. Synchrotron Rad. 2, 83-86.
62. Teplyakov, A., Oliva, G. & Polikarpov, I. (1998). Acta Cryst. D54, 610-614.
63. Thomas, J. (1997). Thesis, University of Hamburg, Germany.
64. Trame, C. (1997). Thesis, University of Hamburg, Germany.
65. Wang, B.-C. (1985). Methods Enzymol. 115, 90-112.
66. Weiss, M. S. (2001). J. Appl. Cryst. 34, 130-135.
67. Weiss, M. S., Mander, G., Hedderich, R., Diederichs, K., Ermler, U. & Warkentin, E. (2004). Acta Cryst. D60, 686-695.
68. Weiss, M. S., Panjikar, S., Nowak, E. & Tucker, P. A. (2002). Acta Cryst. D58, 1407-1412.
69. Weiss, M. S., Sicker, T., Djinović Carugo, K. & Hilgenfeld, R. (2001). Acta Cryst. D57, 689-695.
70. Weiss, M. S., Sicker, T. & Hilgenfeld, R. (2001). Structure, 9, 771-777.
71. Xia, D., Yu, C. A., Kim, H., Xia, J. Z., Kachurin, A. M., Zhang, L., Yu, L. & Deisenhofer, J. (1997). Science, 277, 60-66. Erratum: Science (1997). 278, 2037.
72. Yang, C. & Pflugrath, J. W. (2001). Acta Cryst. D57, 1480-1490.
73. Yang, C., Pflugrath, J. W., Courville, D. A., Stence, C. N. & Ferrara, J. D. (2003). Acta Cryst. D59, 1943-1957.