Genetic and environmental effects influencing fruit colour and QTL analysis in raspberry

Theoretical and Applied Genetics

Volumn 121, Issue 4, 2010, Pages 611-627

  McCallum, Susan ^a   Woodhead, Mary ^a   Hackett, Christine A ^b   Kassim, Angzzas ^c   Paterson, Alistair ^c   Graham, Julie ^a  

^a SCOTTISH CROP RESEARCH INSTITUTE   (United Kingdom)

^b BIOMATHEMATICS AND STATISTICS SCOTLAND   (United Kingdom)

^c UNIVERSITY OF STRATHCLYDE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ANTHOCYANIN CONTENT; COLOUR MEASUREMENT; ENVIRONMENTAL EFFECTS; FLAVONOIDS; MAPPING POPULATIONS; QTL ANALYSIS; RED RASPBERRY; RUBUS IDAEUS; STRUCTURAL GENE;

BIOCHEMISTRY; FRUITS; TRANSCRIPTION; TRANSCRIPTION FACTORS;

COLOR;

RUBUS GLAUCUS; RUBUS IDAEUS;

ANTHOCYANIN;

ARTICLE; BIOLOGICAL MODEL; BIOSYNTHESIS; CHROMOSOME MAP; ENVIRONMENT; FRUIT; GENETIC MARKER; GENETICS; GENOTYPE; PIGMENTATION; PLANT GENE; PRINCIPAL COMPONENT ANALYSIS; QUANTITATIVE TRAIT; QUANTITATIVE TRAIT LOCUS; ROSACEAE; SEASON;

ANTHOCYANINS; BIOSYNTHETIC PATHWAYS; CHROMOSOME MAPPING; ENVIRONMENT; FRUIT; GENES, PLANT; GENETIC MARKERS; GENOTYPE; MODELS, GENETIC; PIGMENTATION; PRINCIPAL COMPONENT ANALYSIS; QUANTITATIVE TRAIT LOCI; QUANTITATIVE TRAIT, HERITABLE; ROSACEAE; SEASONS;

EID: 78049378518     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-010-1334-5     Document Type: Article

References (67)

1. Abbott JA (1999) Quality measurement of fruits and vegetables. Postharvest Biol Tech 15: 207-225.
2. Alfenito M, Souer E, Goodman C, Buell R, Mol J, Koes R, Walbot V (1998) Functional complementation of anthocyanin sequestration in the vacuole by widely divergent glutathione S-transferases. Plant Cell 10: 1135-1149.
3. Allan AC, Hellens PR, Laing WA (2008) MYB transcription factors that colour our fruit. Trends Plant Sci 13: 99-102.
4. Almela L, Javaloy S, Fernández-López JA, López-Roca JM (1995) Comparison between the tristimulus measurements Yxy and L* a* b* to evaluate the colour of young red wines. Food Chem 53: 321-327.
5. Altschul SF, Gish W, Miller W, Myers EW, Lipman D (1990) Basic and local alignment search tool. J Mol Biol 215: 403-410.
6. Boss PK, Davies C, Robinson SP (1996) Analysis of the expression of anthocyanin pathway genes in developing Vitis vinifera L. cv. Shiraz grape berries and the implications for pathway regulation. Plant Physiol 111: 1059-1066.
7. Castañeda-Ovando A, Pacheco-Hernández ML, Páez-Hernández ME, Rodríguez JA, Galán-Vidal CA (2009) Chemical studies of anthocyanins: a review. Food Chem 113: 859-871.
8. Castellarin SD, Di-Gaspero G (2007) Transcriptional control of anthocyanin biosynthetic genes in extreme phenotypes for berry pigmentation of naturally occurring grapevines. Plant Biol 7: 46-49.
9. Cheng GW, Breen PJ (1991) Activity of phenylalanine ammonia-lyase (PAL) and concentrations of anthocyanins and phenolics in developing strawberry fruit. J Am Soc Hortic Sci 116: 865-869.
10. Clydesdale FM (1993) Colour as a factor in food choice. Crit Rev Food Sci 33: 83-101.
11. Cone KC, Burr FA, Burr B (1986) Molecular analysis of the maize anthocyanin regulatory locus C1. Proc Natl Acad Sci USA 83: 9631-9635.
12. Connor AM, Stephens MJ, Hall HK, Alspach PA (2005a) Variation and heritabilities of antioxidant activity and total phenolic content estimated from a red raspberry factorial experiment. J Am Soc Hortic Sci 130: 403-411.
13. Connor AM, McGhie TK, Stephens MJ, Hall HK, Alspach PA (2005b) Variation and heritability estimates of anthocyanins and their relationship to antioxidant activity in a red raspberry factorial mating design. J Am Soc Hortic Sci 130: 534-542.
14. Davies AJ, Mazza G (1993) Copigmentation of simple and acylated anthocyanins with colorless phenolic compounds. J Agric Food Chem 41: 716-720.
15. Delwiche J (2004) The impact of perceptual interactions on perceived flavour. Food Qual Prefer 15: 137-146.
16. DuBose CN, Cardello AV, Maller O (1980) Effect of colorants and flavorants on identification, perceived flavour intensity and hedonic quality of fruit-flavored beverages and cake. J Food Sci 45: 1393-1399.
17. Espley RV, Hellens RP, Putterill J, Stevenson D, Kutty-Amma S, Allan AC (2007) Red colouration in apple fruit is due to the activity of the MYB transcription factor, MdMYB10. Plant J 49: 414-427.
18. Espley RV, Brendolise C, Chagne D, Kutty-Amma S, Green S, Volz R, Putterill J, Schouten HJ, Gardiner SE, Hellens RP, Allan AC (2009) Multiple repeats of a promoter segment causes transcription factor autoregulation in red apples. Plant Cell 21: 168-183.
19. Etienne C, Rothan C, Moing A, Plomion C, Bodenes C, Svanella-Dumas L, Cosson P, Pronier V, Monet R, Dirlewanger E (2002) Candidate genes and QTLs for sugar and organic acid content in peach [Prunus persica (L.) Batsch]. Theor Appl Genet 105: 145-159.
20. Garber LL, Hyatt EM, Starr RG (2000) The effects of food color on perceived flavor. J Mark Theor Pract 8: 59-72.
21. Genstat (2007) Genstat for Windows Release 10. 2. VSN International Ltd, Hemel Hempstead, Hertfordshire.
22. Graham J, Jennings SN (2009) Raspberry breeding. In: Jain SM, Priyadarshan M (eds) Breeding plantation tree crops: tropical species. IBH & Science Publication Inc, Oxford, pp 233-248.
23. Graham J, Smith K, Mackenzie K, Jorgensen L, Hackett CA, Powell W (2004) The construction of a genetic linkage map of red raspberry (Rubus idaeus subsp. idaeus) based on AFLPs, genomic-SSR and EST-SSR markers. Theor Appl Genet 109: 740-749.
24. Graham J, Smith K, Tierney I, Mackenzie K, Hackett CA (2006) Mapping gene H controlling cane pubescence in raspberry and its association with resistance to cane botrytis and spur blight, rust and cane spot. Theor Appl Genet 112: 818-831.
25. Graham J, Hackett CA, Smith K, Woodhead M, Hein I, McCallum S (2009) Mapping QTL for developmental traits in raspberry from bud break to ripe fruit. Theor Appl Genet 118: 1143-1155.
26. Grimplet J, DeLuc LG, Tillet RL, Wheatley MD, Schlauch KA, Cramer GR, Cushman JC (2007) Tissue specific mRNA expression profiling in grape berry tissues. BMC Genomics 8: 187. doi: 10. 1186/1471-2164-8-187.
27. Hartmann U, Sagasser M, Mehrtens F, Stracke R, Weisshaar B (2005) Differential combinatorial interactions of cis-acting elements recognized by R2R3-MYB, BZIP, and BHLH factors control light-responsive and tissue-specific activation of phenylpropanoid biosynthesis genes. Plant Mol Biol 57: 155-171.
28. Hein I, Williamson S, Russell J, Powell W (2005) Isolation of high molecular weight DNA suitable for BAC library construction from woody perennial soft-fruit species. Biotechniques 38: 69-71.
29. Holm M, Ma LG, Qu LJ, Deng XW (2002) Two interacting bZIP proteins are direct targets of COP1-mediated control of light-dependent gene expression in Arabidopsis. Genes Dev 16: 1247-1259.
30. Ibrahim RK, Bruneau A, Bantignies B (1998) Plant O-methyltransferases: molecular analysis, common signature and classification. Plant Mol Biol 36: 1-10.
31. Jaakola L, Määttä-Riihinen K, Kärenlampi S, Hohtola A (2004) Activation of flavonoid biosynthesis by solar radiation in bilberry (Vaccinium myrtillus L.) leaves. Planta 218: 721-728.
32. Jennings DL (1988) Raspberries and blackberries: their breeding, diseases and growth. Academic Press, London.
33. Jennings DL, Carmichael E (1980) Anthocyanin variation in the genus Rubus. New Phytol 84: 505-513.
34. Johnson JL, Dzendolet E, Clydesdale FM (1983) Psychological relationships between sweetness and redness in strawberry-drinks. J Food Protect 46: 21-25.
35. Kassim A, Poette J, Paterson A, Zait D, McCallum S, Woodhead M, Smith K, Hackett CA, Graham J (2009) Environmental and seasonal influences on red raspberry anthocyanin antioxidant contents and identification of quantitative traits loci (QTL). Mol Nutr Food Res 53: 625-634.
36. Kenward MG, Roger JH (1997) Small sample inference for fixed effects from restricted maximum likelihood. Biometrics 53: 983-997.
37. Kobayashi S, Goto-Yamamoto N, Hirochika H (2004) Retrotransposon-induced mutation in grape skin colour. Science 304: 982.
38. Liang Z, Yang C, Yang J, Wu B, Wang L, Cheng J, Li S (2009) Inheritance of anthocyanins in berries of Vitis vinifera grapes. Euphytica 167: 113-125.
39. Lijavetzky D, Ruiz-Garcia L, Cabezas J, De Andres M, Bravo G, Ibanez A, Carreno J, Cabello F, Ibanez J, Martinez-Zapater J (2006) Molecular genetics of berry colour variation in table grape. Mol Genet Genomics 276: 427-435.
40. Lu YP, Li ZS, Drozdowicz YM, Hortensteiner S, Martinola E, Rea PA (1998) AtMRP2 an Arabidopsis binding cassette transporter able to transport glutathionone-s-conjugates and chlorophyll catabolites with AtMRP1. Plant Cell 10: 267-282.
41. Maeshima M, Ishikawa F (2008) ER membrane aquaporins in plants. Eur J Physiol 456: 709-716.
42. Maga JA (1974) Influence of color on taste thresholds. Chem Senses Flavor 1: 115-119.
43. Mallappa C, Yadav V, Negi P, Chattophayay S (2006) A basic leucine zipper transcription factor, G-box-binding factor 1, regulates blue light-mediated photomorphogenic growth in Arabidopsis. J Biol Chem 281: 22190-22199.
44. Malosetti M, Ribaut JM, Vargas M, Cross J, van Eeuwijk FA (2008) A multi-trait multi-environment QTL mixed model with an application to drought and nitrogen stress traits in maize (Zea mays L.). Euphytica 161: 241-257.
45. Marrs KA (1996) The functions and regulation of glutathione S-transferases in plants. Annu Rev Plant Phys 47: 127-158.
46. Martinoia E, Massonneau A, Frangne N (2000) Transport processes of solutes across the vacuolar membrane of higher plants. Plant Cell Phys 41: 1175-1186.
47. Mazza G, Brouillard R (1990) The mechanism of co-pigmentation of anthocyanins in aqueous solutions. Phytochemistry 29: 1097-1102.
48. Ness AR, Powles AW (1997) Fruit and vegetables and cardiovascular disease: a review. Int J Epidemiol 26: 1-13.
49. Nielsen K, Deroles SC, Markham KR, Bradley MJ, Podivinsky E, Manson D (2002) Antisense flavonol synthase alters copigmentation and flower colour in lisianthus. Mol Breed 9: 217-229.
50. Nijhawan A, Jain M, Tyagi AK, Khurana JP (2008) Genomic survey and gene expression analysis of the basic leucine zipper transcription factor family in rice. Plant Physiol 146: 333-350.
51. Oliviusson P, Salaj J, Hakman I (2001) Expression pattern of transcripts encoding water channel-like proteins in Norway spruce (Picea abies). Plant Mol Biol 46: 289-299.
52. Palace VP, Khaper N, Qin Q, Singal PK (1999) Antioxidant potentials of vitamin A and carotenoids and their relevance to heart disease. Free Radic Biol Med 26: 746-761.
53. Roth H, Radle LJ, Gifford SR, Clydesdale FM (1988) Psychophysical relationships between perceived sweetness and colour in lemon and lime-flavored drinks. J Food Sci 53: 1116-1119.
54. Rozen S, Skaletsky HJ (2000) Primer3 on the WWW for general users and for biologists programmers. Methods Mol Biol 32: 356-386.
55. Schwarz G (1978) Estimating the dimension of a model. Ann Stat 6: 461-464.
56. Smart L, Moskal W, Cameron K, Bennett A (2001) MIP genes are down-regulated under drought stress in Nicotiana glauca. Plant Cell Physiol 42: 686-693.
57. Stewart D, McDougall GJ, Sungurtas J, Verrall S, Graham J, Martinussen I (2007) Metabolomic approach to identifying bioactive compounds in berries: advances toward fruit nutritional enhancement. Mol Nutr Food Res 51: 645-651.
58. Trabelsi N, Petit P, Manigand C, d'Estaintot BL, Granier T, Chaudiere J, Gallois B (2008) Structural evidence for the inhibition of grape dihydroflavonol 4-reductase by flavonols. Acta Crystallogr D 64: 883-891.
59. ®5, software for the mapping of quantitative trait loci in experimental populations. Kyazma BV, Wageningen.
60. ® 3. 0, software for the calculation of genetic linkage maps. Plant Research International, Wageningen.
61. Wang SY, Chen CT, Wang CY (2009) The influence of light and maturity on fruit quality and flavonoid content of red raspberries. Food Chem 112: 676-684.
62. Wellman F, Lukačin R, Moriguchi T, Britsch L, Schilitz E, Matern U (2002) Functional expression and mutational analysis of flavonol synthase from Citrus unshiu. Eur J Biochem 269: 4142-4143.
63. Woodhead M, McCallum S, Smith K, Cardle L, Mazzitelli L, Graham J (2008) Identification, characterisation and mapping of simple sequence repeat (SSR) markers from raspberry root and bud ESTs. Mol Breed 22: 555-563.
64. Xie X, Chen Z, Wang X (2004) Chalcone synthase gene cloning in Gerbera hybrida and expression in E. coli. J Trop Subtrop Bot 12: 431-434.
65. Yoshida K, Toyama-Kato Y, Kameda K, Kondo T (2003) Sepal colour variation of Hydrangea macrophylla and vacuolar pH measured with a proton-selective microelectrode. Plant Cell Physiol 44: 262-268.
66. Zampini M, Sanabria D, Phillips N, Spence C (2007) The multisensory perception of flavor: assessing the influence of color cues on flavor discrimination responses. Food Qual Prefer 18: 975-984.
67. Zellner DA, Durlach P (2003) Effect of color on expected and experienced refreshment, intensity, and liking of beverages. Am J Psychol 116: 633-647.