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Volumn 161, Issue 1-2, 2008, Pages 241-257

A multi-trait multi-environment QTL mixed model with an application to drought and nitrogen stress trials in maize (Zea mays L.)

Author keywords

Genetic correlation; Mixed model; Multi environment trial; Multi trait analysis; Pleiotropy; QTL by environment interaction

Indexed keywords

ZEA MAYS;

EID: 42149128810     PISSN: 00142336     EISSN: 15735060     Source Type: Journal    
DOI: 10.1007/s10681-007-9594-0     Document Type: Article
Times cited : (131)

References (51)
  • 1
    • 0343734032 scopus 로고
    • Three-way methods for attribute genotype x environment data: An illustrated partial survey
    • Basford KE, Kronenberg PM, DeLacy IH (1991) Three-way methods for attribute genotype x environment data: an illustrated partial survey. Field Crops Res 27:131-157
    • (1991) Field Crops Res , vol.27 , pp. 131-157
    • Basford, K.E.1    Kronenberg, P.M.2    Delacy, I.H.3
  • 2
    • 37249055906 scopus 로고    scopus 로고
    • A mixed-model quantitative trait loci (QTL) analysis for multiple-environment trial data using environmental covariables for QTL-by-environment interactions, with an example in maize
    • Boer MP, Wright D, Feng L, Podlich DW, Luo L, Cooper M, van Eeuwijk FA (2007) A mixed-model quantitative trait loci (QTL) analysis for multiple-environment trial data using environmental covariables for QTL-by-environment interactions, with an example in maize. Genetics 177:1801-1813
    • (2007) Genetics , vol.177 , pp. 1801-1813
    • Boer, M.P.1    Wright, D.2    Feng, L.3    Podlich, D.W.4    Luo, L.5    Cooper, M.6    Van Eeuwijk, F.A.7
  • 4
    • 0028854963 scopus 로고
    • Three-mode analyses of maize using morphological and agronomical attributes measured in multilocation trials
    • Crossa J, Basford K, Taba S, DeLacy IH, Silva E (1995) Three-mode analyses of maize using morphological and agronomical attributes measured in multilocation trials. Crop Sci 35:1483-1491
    • (1995) Crop Sci , vol.35 , pp. 1483-1491
    • Crossa, J.1    Basford, K.2    Taba, S.3    Delacy, I.H.4    Silva, E.5
  • 5
    • 4544325042 scopus 로고    scopus 로고
    • Linear-bilinear models for the analysis of genotype-environment interaction
    • CAB International Wallingford
    • Crossa J, Cornelius P (2002) Linear-bilinear models for the analysis of genotype-environment interaction. In: Kang MS (ed), Quantitative genetics, genomics, and plant breeding. CAB International, Wallingford, UK, pp 305-322
    • (2002) Quantitative Genetics, Genomics, and Plant Breeding , pp. 305-322
    • Crossa, J.1    Cornelius, P.2    Kang, M.S.3
  • 6
    • 0031919890 scopus 로고    scopus 로고
    • Spatial analysis of multi-environment early generation variety trials
    • Cullis B, Gogel B, Verbyla A, Thompson R (1998) Spatial analysis of multi-environment early generation variety trials. Biometrics 54:1-18
    • (1998) Biometrics , vol.54 , pp. 1-18
    • Cullis, B.1    Gogel, B.2    Verbyla, A.3    Thompson, R.4
  • 7
    • 0030753906 scopus 로고    scopus 로고
    • Modelling expectation and variance for genotype by environment data
    • Denis JB, Piepho HP, van Eeuwijk FA (1997) Modelling expectation and variance for genotype by environment data. Heredity 79:162-171
    • (1997) Heredity , vol.79 , pp. 162-171
    • Denis, J.B.1    Piepho, H.P.2    Van Eeuwijk, F.A.3
  • 8
    • 42149161350 scopus 로고    scopus 로고
    • Assessing the importance of genotype x environment interaction for root traits in rice using a mapping population III: QTL analysis by mixed models
    • Emrich K, Price A, Piepho HP (2007) Assessing the importance of genotype x environment interaction for root traits in rice using a mapping population III: QTL analysis by mixed models. Euphytica (this issue)
    • (2007) Euphytica , Issue.THIS ISSUE
    • Emrich, K.1    Price, A.2    Piepho, H.P.3
  • 9
    • 84970558538 scopus 로고
    • The analysis of adaptation in a plant breeding programme
    • Finlay KW, Wilkinson GN (1963) The analysis of adaptation in a plant breeding programme. Aust J Agric Res 14:742-754
    • (1963) Aust J Agric Res , vol.14 , pp. 742-754
    • Finlay, K.W.1    Wilkinson, G.N.2
  • 10
    • 0000930139 scopus 로고
    • Least squares approximation of matrices by additive and multiplicative models
    • Gabriel KR (1978) Least squares approximation of matrices by additive and multiplicative models. J R Stat Soc Ser B 40:186-196
    • (1978) J R Stat Soc Ser B , vol.40 , pp. 186-196
    • Gabriel, K.R.1
  • 11
    • 0000502954 scopus 로고
    • Model selection and validation for yield trials with interaction
    • Gauch HG (1988) Model selection and validation for yield trials with interaction. Biometrics 44:705-715
    • (1988) Biometrics , vol.44 , pp. 705-715
    • Gauch, H.G.1
  • 12
    • 0014265599 scopus 로고
    • A statistical model which combines features of factor analysis and analysis of variance techniques
    • Gollob HF (1968) A statistical model which combines features of factor analysis and analysis of variance techniques. Psychometrika 33:73-115
    • (1968) Psychometrika , vol.33 , pp. 73-115
    • Gollob, H.F.1
  • 14
    • 0029150701 scopus 로고
    • REML estimation of multiplicative effects in multienvironment variety trials
    • Gogel BJ, Cullis BR, Verbyla AP (1995) REML estimation of multiplicative effects in multienvironment variety trials. Biometrics 51:744-749
    • (1995) Biometrics , vol.51 , pp. 744-749
    • Gogel, B.J.1    Cullis, B.R.2    Verbyla, A.P.3
  • 15
    • 0035099309 scopus 로고    scopus 로고
    • Multi-trait QTL mapping in barley using multivariate regression
    • Hackett CA, Meyer RC, Thomas WTB (2001) Multi-trait QTL mapping in barley using multivariate regression. Genet Res 77:95-106
    • (2001) Genet Res , vol.77 , pp. 95-106
    • Hackett, C.A.1    Meyer, R.C.2    Thomas, W.T.B.3
  • 16
    • 33646942472 scopus 로고
    • A simple regression method for mapping quantitative trait loci in line crosses using flanking markers
    • Haley CS, Knott SA (1992) A simple regression method for mapping quantitative trait loci in line crosses using flanking markers. Heredity 69:315-324
    • (1992) Heredity , vol.69 , pp. 315-324
    • Haley, C.S.1    Knott, S.A.2
  • 17
    • 0029022716 scopus 로고
    • Multiple trait analysis of genetic mapping for quantitative trait loci
    • Jiang C, Zeng Z-B (1995) multiple trait analysis of genetic mapping for quantitative trait loci. Genetics 140:1111-1127
    • (1995) Genetics , vol.140 , pp. 1111-1127
    • Jiang, C.1    Zeng, Z.-B.2
  • 18
    • 0031423792 scopus 로고    scopus 로고
    • Mapping quantitative trait loci with dominant and missing markers in various crosses from two inbred lines
    • Jiang CJ, Zeng ZB (1997) Mapping quantitative trait loci with dominant and missing markers in various crosses from two inbred lines. Genetica 101:47-58
    • (1997) Genetica , vol.101 , pp. 47-58
    • Jiang, C.J.1    Zeng, Z.B.2
  • 19
    • 0033790231 scopus 로고    scopus 로고
    • Multitrait least squares for quantitative trait loci detection
    • Knott SA, Haley CS (2000) Multitrait least squares for quantitative trait loci detection. Genetics 156:899-911
    • (2000) Genetics , vol.156 , pp. 899-911
    • Knott, S.A.1    Haley, C.S.2
  • 20
    • 0031896139 scopus 로고    scopus 로고
    • Multi-interval mpaping of correlated trait complexes
    • Korol AB, Ronin YI, Nevo E, Hayes PM (1998) Multi-interval mpaping of correlated trait complexes. Heredity 80:273-284
    • (1998) Heredity , vol.80 , pp. 273-284
    • Korol, A.B.1    Ronin, Y.I.2    Nevo, E.3    Hayes, P.M.4
  • 21
    • 0000895685 scopus 로고
    • An investigation of multi-attribute genotype response across environments using three-mode principal component analysis
    • Kroonenberg PM, Basford KE (1989) An investigation of multi-attribute genotype response across environments using three-mode principal component analysis. Euphytica 44:109-123
    • (1989) Euphytica , vol.44 , pp. 109-123
    • Kroonenberg, P.M.1    Basford, K.E.2
  • 22
    • 30744434862 scopus 로고    scopus 로고
    • Adjusting multiple testing in multilocus analyses using the eigenvalues of a correlation matrix
    • Li J, Ji L (2005) Adjusting multiple testing in multilocus analyses using the eigenvalues of a correlation matrix. Heredity 95:221-227
    • (2005) Heredity , vol.95 , pp. 221-227
    • Li, J.1    Ji, L.2
  • 23
    • 0037277566 scopus 로고    scopus 로고
    • Multitrait fine mapping of quantitative trait loci using combined linkage disequilibria and linkage analysis
    • Lund MS, Sorensen P, Guldbrandtsen B, Sorensen DA (2003) Multitrait fine mapping of quantitative trait loci using combined linkage disequilibria and linkage analysis. Genetics 163:405-410
    • (2003) Genetics , vol.163 , pp. 405-410
    • Lund, M.S.1    Sorensen, P.2    Guldbrandtsen, B.3    Sorensen, D.A.4
  • 26
    • 4544317910 scopus 로고    scopus 로고
    • Mixed models including environmental covariables for studying QTL by environment interaction
    • Malosetti M, Voltas J, Romagosa I, Ullrich SE, van Eeuwijk FA (2004) Mixed models including environmental covariables for studying QTL by environment interaction. Euphytica 137:139-145
    • (2004) Euphytica , vol.137 , pp. 139-145
    • Malosetti, M.1    Voltas, J.2    Romagosa, I.3    Ullrich, S.E.4    Van Eeuwijk, F.A.5
  • 27
    • 0000380147 scopus 로고
    • Estimating the locations and the sizes of the effects of quantitative trait loci using flanking markers
    • Martínez O, Curnow RN (1992) Estimating the locations and the sizes of the effects of quantitative trait loci using flanking markers. Theor Appl Genet 85:480-488
    • (1992) Theor Appl Genet , vol.85 , pp. 480-488
    • Martínez, O.1    Curnow, R.N.2
  • 30
    • 0000757352 scopus 로고
    • Multiplicative effects in mixed model analysis of variance
    • Oman SD (1991) Multiplicative effects in mixed model analysis of variance. Biometrika 78:729-739
    • (1991) Biometrika , vol.78 , pp. 729-739
    • Oman, S.D.1
  • 31
    • 77956889208 scopus 로고
    • Recovery of inter-block information when block sizes are unequal
    • Patterson HD, Thompson R (1971) Recovery of inter-block information when block sizes are unequal. Biometrika 58:545-554
    • (1971) Biometrika , vol.58 , pp. 545-554
    • Patterson, H.D.1    Thompson, R.2
  • 32
    • 0002648792 scopus 로고    scopus 로고
    • The Schwarz criterion and related methods for normal linear models
    • Pauler DK (1998) The Schwarz criterion and related methods for normal linear models. Biometrika 85:13-27
    • (1998) Biometrika , vol.85 , pp. 13-27
    • Pauler, D.K.1
  • 34
    • 0030898879 scopus 로고    scopus 로고
    • Analyzing genotype-environment data by mixed models with multiplicative terms
    • Piepho HP (1997) Analyzing genotype-environment data by mixed models with multiplicative terms. Biometrics 53:761-766
    • (1997) Biometrics , vol.53 , pp. 761-766
    • Piepho, H.P.1
  • 35
    • 0034536309 scopus 로고    scopus 로고
    • A mixed-model approach to mapping quantitative trait loci in barley on the basis of multiple environment data
    • Piepho HP (2000) A mixed-model approach to mapping quantitative trait loci in barley on the basis of multiple environment data. Genetics 156:2043-2050
    • (2000) Genetics , vol.156 , pp. 2043-2050
    • Piepho, H.P.1
  • 36
    • 16244419744 scopus 로고    scopus 로고
    • Statistical tests for QTL and QTL-by-environment effects in segregating populations derived from line crosses
    • Piepho HP (2005) Statistical tests for QTL and QTL-by-environment effects in segregating populations derived from line crosses. Theor Appl Genet 110:561-566
    • (2005) Theor Appl Genet , vol.110 , pp. 561-566
    • Piepho, H.P.1
  • 37
    • 28444445926 scopus 로고    scopus 로고
    • R Development Core Team R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-07-0
    • R Development Core Team (2005) R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-07-0, URL http://www.R-project.org
    • (2005) R: A Language and Environment for Statistical Computing
  • 38
    • 0029739388 scopus 로고    scopus 로고
    • Identification of quantitative trait loci under drought conditions in tropical maize.1. Flowering parameters and the anthesis-silking interval
    • Ribaut JM, Hoisington DA, Deutsch JA, Jiang C, Gonzalez de Leon D (1996) Identification of quantitative trait loci under drought conditions in tropical maize.1. Flowering parameters and the anthesis-silking interval. Theor Appl Genet 92:905-914
    • (1996) Theor Appl Genet , vol.92 , pp. 905-914
    • Ribaut, J.M.1    Hoisington, D.A.2    Deutsch, J.A.3    Jiang, C.4    Gonzalez De Leon, D.5
  • 39
    • 0030906229 scopus 로고    scopus 로고
    • Identification of quantitative trait loci under drought conditions in tropical maize.2. Yield components and marker-assisted selection strategies
    • Ribaut JM, Jiang C, Gonzalez de Leon D, Edmeades GO, Hoisington DA (1997) Identification of quantitative trait loci under drought conditions in tropical maize.2. Yield components and marker-assisted selection strategies. Theor Appl Genet 94:887-896
    • (1997) Theor Appl Genet , vol.94 , pp. 887-896
    • Ribaut, J.M.1    Jiang, C.2    Gonzalez De Leon, D.3    Edmeades, G.O.4    Hoisington, D.A.5
  • 40
    • 0004282518 scopus 로고    scopus 로고
    • SAS Institute SAS Institute, Cary, NC
    • SAS Institute (1999) SAS/Stat User's guide, Version 8. SAS Institute, Cary, NC
    • (1999) SAS/Stat User's Guide, Version 8
  • 41
    • 0000120766 scopus 로고
    • Estimating the dimension of a model
    • Schwarz G (1978) Estimating the dimension of a model. Ann Stat 6:461-464
    • (1978) Ann Stat , vol.6 , pp. 461-464
    • Schwarz, G.1
  • 42
    • 0035181008 scopus 로고    scopus 로고
    • Analyzing variety by environment data using multiplicative mixed models and adjustments for spatial field trend
    • Smith A, Cullis B, Thompson R (2001) analyzing variety by environment data using multiplicative mixed models and adjustments for spatial field trend. Biometrics 57:1138-1147
    • (2001) Biometrics , vol.57 , pp. 1138-1147
    • Smith, A.1    Cullis, B.2    Thompson, R.3
  • 43
    • 34548329945 scopus 로고    scopus 로고
    • Varietal selection for perennial crops where data relate to multiple harvests from a series of field trials
    • Smith A, Stringer J, Wei X, Cullis B (2007) Varietal selection for perennial crops where data relate to multiple harvests from a series of field trials. Euphytica 157:253-266
    • (2007) Euphytica , vol.157 , pp. 253-266
    • Smith, A.1    Stringer, J.2    Wei, X.3    Cullis, B.4
  • 44
    • 30444432667 scopus 로고    scopus 로고
    • The analysis of crop cultivar breeding and evaluation trials: An overview of current mixed model approaches
    • Smith AB, Cullis BR, Thompson R (2005) The analysis of crop cultivar breeding and evaluation trials: an overview of current mixed model approaches. J Agric Sci 143:449-462
    • (2005) J Agric Sci , vol.143 , pp. 449-462
    • Smith, A.B.1    Cullis, B.R.2    Thompson, R.3
  • 45
    • 0037296734 scopus 로고    scopus 로고
    • Multivariate mixed inheritance models for QTL detection on porcine chromosome 6
    • Szyda J, Grindflek E, Liu Z, Lien S (2003) Multivariate mixed inheritance models for QTL detection on porcine chromosome 6. Genet Res 81:65-73
    • (2003) Genet Res , vol.81 , pp. 65-73
    • Szyda, J.1    Grindflek, E.2    Liu, Z.3    Lien, S.4
  • 46
    • 0028834035 scopus 로고
    • Linear and bilinear models for the analysis of multi-environment trials: I. An inventory of models.
    • van Eeuwijk FA (1995) Linear and bilinear models for the analysis of multi-environment trials: I. An inventory of models. Euphytica 84:1-7
    • (1995) Euphytica , vol.84 , pp. 1-7
    • Van Eeuwijk, F.A.1
  • 47
    • 4243622125 scopus 로고
    • The simultaneous analysis of genotype by environment interaction for a number of traits using three-way multiplicative modelling
    • -27
    • van Eeuwijk FA, Kroonenberg PM (1995) The simultaneous analysis of genotype by environment interaction for a number of traits using three-way multiplicative modelling. Biuletyn Oceny Odmian (Cultivar Testing Bulletin) 26-27: 83-96
    • (1995) Biuletyn Oceny Odmian (Cultivar Testing Bulletin) , vol.26 , pp. 83-96
    • Van Eeuwijk, F.A.1    Kroonenberg, P.M.2
  • 49
    • 33645392019 scopus 로고    scopus 로고
    • Mapping QTLs and QTL x environment interaction for CIMMYT maize drought stress program using factorial regression and partial least squares methods
    • Vargas M, van Eeuwijk F, Crossa J, Ribaut J-M (2006) Mapping QTLs and QTL x environment interaction for CIMMYT maize drought stress program using factorial regression and partial least squares methods. Theor Appl Genet 112:1009-1023
    • (2006) Theor Appl Genet , vol.112 , pp. 1009-1023
    • Vargas, M.1    Van Eeuwijk, F.2    Crossa, J.3    Ribaut, J.-M.4
  • 51
    • 1642524996 scopus 로고    scopus 로고
    • The analysis of quantitative trait loci in multi-environment trials using a multiplicative mixed model
    • Verbyla A, Eckermann PJ, Thompson R, Cullis B (2003) The analysis of quantitative trait loci in multi-environment trials using a multiplicative mixed model. Aust J Agric Res 54:1395-1408
    • (2003) Aust J Agric Res , vol.54 , pp. 1395-1408
    • Verbyla, A.1    Eckermann, P.J.2    Thompson, R.3    Cullis, B.4


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