Candidate genes and QTLs for sugar and organic acid content in peach [Prunus persica (L.) Batsch]

Theoretical and Applied Genetics

Volumn 105, Issue 1, 2002, Pages 145-159

  Etienne, C ^a   Rothan, C ^a   Moing, A ^a   Plomion, C ^a   Bodenes C ^a   Svanella Dumas, L ^a   Cosson, P ^a   Pronier, V ^a   Monet, R ^a   Dirlewanger, E ^a  

^a CEMAGREF   (France)

Author keywords

Candidate genes; Comparative mapping; Fruit quality; Prunus; QTL; Single strand conformation polymorphism (SSCP); Sugar and organic acid metabolism

Indexed keywords

DNA; FRUITS; GENES; ORGANIC ACIDS; SUGAR (SUCROSE);

POLYMORPHISM;

GENETIC ENGINEERING;

FRUITS; GENES; GENETICS; NUCLEIC ACIDS; ORGANIC ACIDS; SUGAR;

EMBRYOPHYTA; PRUNUS; PRUNUS DULCIS; PRUNUS PERSICA; PRUNUS PERSICA NUCIPERSICA;

EID: 0036923837     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-001-0841-9     Document Type: Article

References (70)

1. Abbott AG, Rajapakse S, Sosinski B, Lu ZX, Sossey-Alaoui K, Gannavarapu M, Reighard G, Ballard RE, Baird WV, Scorza R, Callahan A (1998) Construction of saturated linkage maps of peach crosses segregating for characters controlling fruit quality, tree architecture and pest resistance. Acta Hortic 465:41-49
2. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403-410
3. Andersson L, Haley CS, HE (1994) Genetic mapping of quantitative trait loci for growth and fatness in pigs. Science 263:1771-1774
4. Anneloor LMA, Asbroek T, Olsen J, Housman D, Baas F, Stanton VJ (2001) Genetic variation in mRNA coding sequences of highly conserved genes. Physiol Genomics 5:113-118
5. Basten CJ, Weir BS, Zeng ZB (1997) QTL Cartographer. A Reference Manual and Tutorial for QTL Mapping. Department of Statistics, North Carolina State University, Raleigh, N.C. USA
6. Beruter J (1993) Characterization of the permeability of excised apple tissue for sorbitol. J Exp Bot 44:519-528
7. Bodenes C, Pradere S, Kremer A (1996) RAPD-SCAR-SSCP: A method to detect molecular differentiation in closely related oak species In: Ahuja MR, Boerjan W, Neale DB (eds) Somatic Cell Genetics and Molecular Genetics of Trees. Kluwer, Dordrecht, pp 239-248
8. Brunel D, Froger N, Pelletier G (1999) Development of amplified consensus genetic markers (ACGM) in Brassica napus from Arabidopsis thaliana sequences of known biological function. Genome 42:387-402
9. Cameron JW, Soost RK (1977) Acidity and total soluble solids in Citrus hybrids and advanced crosses involving acidless orange and acidless pummelo. J Am Soc Hortic Sci 120:510-514
10. Chaparro JX, Werner DJ, O'Malley D, Sederoff RR (1994) Targeted mapping and linkage analysis of morphological isozyme, and RAPD markers in peach. Theor Appl Genet 87:805-815
11. Cho YG, Blair MW, Panaud O, McCouch SR (1996) Cloning and mapping of variety-specific rice genomic DNA sequences: Amplified fragment length polymorphisms (AFLP) from silver-stained polyacrylamide gels. Genome 39:373-8
12. Cipriani G, Lot G, Huang WG, Marrazzo MT, Peterlunger E, Testolin R (1999) AC/GT and AG/CT microsatellite repeats in peach [Prunus persica (L) Batsch]: Isolation, characterisation and cross-species amplification in Prunus. Theor Appl Genet 99:65-72
13. Cosgrove DJ (2000) Loosening of plant cell walls by expansins. Nature 407:321-326
14. de Vienne D, Leonardi A, Damerval C, Zivy M (1999) Genetics of proteome variation for QTL characterization: Application to drought-stress responses in maize. J Exp Bot 50:303-309
15. Dirlewanger E, Pronier V, Parvery C, Rothan C, Guye A, Monet R (1998) Genetic linkage map of peach [Prunus persica (L.) Batsch] using morphological and molecular markers. Theor Appl Genet 97:888-895
16. Dirlewanger E, Moing A, Rothan C, Svanella L, Pronier V, Guye A, Plomion C, Monet R (1999) Mapping QTLs controlling fruit quality in peach [Prunus persica (L.) Batsch]. Theor Appl Genet 98:18-31
17. Etienne C, Moing A, Dirlewanger E, Raymond P, Monet R, Rothan C (2002) Isolation and characterisation of six peach cDNAs encoding key proteins in organic acid metabolism and solute accumulation: Involvement in peach fruit acidity. Physiol Plant (in press)
18. Fang DQ, Federici CT, Roose ML (1997) Development of molecular markers linked to a gene controlling fruit acidity in citrus. Genome 40:841-849
19. Fideghelli C, Della Strada G, Grassi F, Morico G (1998) The peach industry in the world: Present situation and trend. Acta Hortic 465:29-40
20. Frary A, Nesbitt TC, Grandillo S, van der Knaap E, Cong B, Liu J, Meller J, Elher R, Alpert KB, Tanksley SD (2000) Fw2.2: A quantitative trait locus key to the evolution of tomato fruit size. Science 289:85-88
21. Fridman E, Plehan T, Zamir D (2000) A recombination hotspot delimits a wild-species quantitative trait locus for tomato sugar content to 484 bp within an invertase gene. Proc Natl Acad Sci USA 97:4718-23
22. Giovannoni J, Yen H, Shelton B, Miller S, Vrebalov J, Kannan P, Tieman D, Hackett R, Grierson D, Klee H (1999) Genetic mapping of ripening and ethylene-related loci in tomato. Theor Appl Genet 98:1005-1013
23. Harada S, Fukuta S, Tanaka H, Ishiguro Y, Sato T (1995) Genetic analysis of the trait of sucrose accumulation in tomato fruit using molecular markers. Breed Sci 45:429-434
24. Henikoff S (1995) Comparative methods for identifying functional domains in protein sequences. Biotechnol Annu Rev 1:129-47
25. Herbers K, Sonnewald U (1998) Molecular determinants of sink strength. Curr Opin Plant Biol 1:207-216
26. Ho LC (1996) The mechanism of assimilate partitioning and carbohydrate compartmentation in fruit in relation to the quality and yield of tomato. J Exp Bet 47:1239-1243
27. Huh JH, Kang BC, Nahm SH, Kim S, Ha KS, Lee MH, Kim BD (2001) A candidate gene approach identified phytoene synthase as the locus for mature fruit color in red pepper (Capsicum spp.). Theor Appl Genet 102:524-530
28. 2 progeny. Theor Appl Genet 97:1034-1041
29. Kervella J, Pascal T, Pfeiffer F, Dirlewanger E (1998) Breeding for multiresistance in peach tree. Acta Hortic 465:177-184
30. Klann EM, Hall B, Bennett AB (1996) Antisense acid invertase (TIV1) gene alters soluble sugar composition and size in transgenic tomato fruit. Plant Physiol 112:1321-1330
31. Lander ES, Botstein D (1989) Quasi-Mendelian analyses of quantitative traits using molecular marker linkage maps. An overview of parameter estimation methods. Vortr Pflanz 16:51-67
32. Lander ES, Green P, Abrahamson J, Barlow A, Daly MJ, Lincoln SE, Newburg L (1987) MAPMAKER: An interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1:174-181
33. Lincoln SE, Daly MJ, Lander ES (1992a) Constructing Genetic Maps with MAPMAKER/EXP 3.0. Whitehead technical report, 3rd edn. Whitehead Institute, Cambridge, Mass.
34. Lincoln SE, Daly MJ, Lander ES (1992b) Mapping Genes Controlling Quantitative Traits with MAPMAKER/QTL 1.1. Whitehead Institute technical report, 2nd edn. Whitehead Institute, Cambridge, Mass.
35. Maliepaard C, Alston FH, Arkel Gv, Brown LM, Chevreau E, Dunemann F, Evans KM, Gardiner S, Guilford P, van Heusden AW, Janse J, Laurens F, Lynn JR, Manganaris AG, Nijs APMd, Periam N, Rikkerink E, Roche P, Ryder C, Sansavini S, Schmidt H, Tartarini S, Verhaegh JJ, Vrielink-van Ginkel M, King GJ (1998) Aligning male and female linkage maps of apple (Malus pumila Mill.) using multi-allelic markers. Theor Appl Genet 97:60-73
36. Martinoia E, Massoneau A, Frangne N (2000) Transport processes of solutes across the vacuolar membrane of higher plants. Plant Cell Physiol 41:1175-1186
37. Milner ID, Ho LC, Hall JL (1995) Properties of proton and sugar transport at the tonoplast of tomato (Lycopersicon esculentum) fruit. Physiol Plant 94:399-410
38. Moing A, Svanella L, Rolin D, Gaudillere M, Gaudillere JP, Monet R (1998) Compositional changes during the fruit development of two peach cultivars differing in juice acidity. J Am Soc Hortic Sci 123:770-775
39. Moing A, Rothan C, Svanella L, Just D, Diakou P, Raymond P, Gaudillere JP, Monet R (2000) Role of phosphoenolpyruvate carboxylase in organic acid accumulation during peach fruit development. Physiol Plant 108:1-10
40. Monet R (1979). Transmission Génétique du Caractère "Fruit Doux" chez le Pêcher. Incidence sur la Sélection pour la Qualité. Eucarpia Fruit Section, Tree Fruit Breeding, Angers, France, INRA, Angers, pp 273-276
41. Müller ML, Irkens-Kiesecker U, Kramer D, Taiz L (1997) Purification and reconstitution of the vacuolar H↑-ATPases from lemon fruits and epicotyls. J Biol Chem 272:12,762-12,770
42. Orita M, Iwahana H, Kanazawa H, Hayashi K, Sekiya T (1989) Detection of polymorphisms of human DNA by gel electrophoresis as single-strand conformation polymorphisms. Proc Natl Acad Sci USA 86:2766-70
43. Pangborn RM (1963) Relative taste intensities of selected sugars and organic acids. J Food Sci 28:726-733
44. Paterson AH, Lander ES, Hewitt JD, Peterson S, Lincoln SE, Tanksley SD (1988) Resolution of quantitative traits into Mendelian factors by using a complete linkage map of restriction fragment length polymorphisms. Nature 335:721-726
45. Pflieger S, Lefebvre V, Caranta C, Blattes A, Goffinet B, Palloix A (1999) Disease resistance gene analogs as candidates for QTLs involved in pepper-pathogen interactions. Genome 42:1100-1110
46. Plomion C, Hurme P, Frigerio JM, Ridolfi M, Pot D, Pionneau C, Avila C, Gallardo F, David H, Neutelings G, Campbell M, Canovas FM, Savolainen O, Kremer A (1999) Developing SSCP markers in two Pinus species. Mol Breed 5:21-31
47. Quarta R, Dettori MT, Sartori A, Verde I (2000) Genetic linkage map and QTL analysis in peach. Acta Hortic 521:233-241
48. Rajapakse S, Belthoff LE, He G, Estager AE, Scorza R, Verde I, Ballard RE, Baird WV, Callahan A, Monet R, Abbott AG (1995) Genetic linkage mapping in peach using morphological, RFLP and RAPD markers. Theor Appl Genet 90:503-510
49. Rothan C, Just D, Gaudillere JP, Moing A, Dirlewanger E, Svanella L, Monet R (1998) Isolation and characterization of cDNAs differentially expressed during early peach [Prunus persica (L.) Batsch] fruit development. Acta Hortic 465:99-105
50. Sadka A, Dahan E, Cohen L, Marsh KB (2000a) Aconitase activity and expression during the development of lemon fruit. Physiol Plant 108:255-262
51. Sadka A, Dahan E, Or E, Cohen L (2000b) NADP(+)-isocitrate dehydrogenase gene expression and isozyme activity during citrus fruit development. Plant Sci 158:173-181
52. Saliba-Colombani V, Causse M, Langlois D, Philouze J, Buret M (2001) Genetic analysis of organoleptic quality in fresh market tomato. 1. Mapping QTLs for physical and chemical traits. Theor Appl Genet 102:259-272
53. Scorza R, Okie WR (1990) Peaches (Prunus). Acta Hortic 290:175-231
54. +-pumps and a tonoplast intrinsic protein of vacuolar membranes during the development of pear fruit. Plant Cell Physiol 38:1039-1045
55. Sosinski B, Gannavarapu M, Hager LD, Beck LE, King GJ, Ryder CD, Rajapakse S, Baird WV, Ballard RE, Abbott AG (2000) Characterization of microsatellite markers in peach [Prunus persica (L.) Batsch]. Theor Appl Genet 101:421-428
56. Stevens MA (1972) Citrate and malate concentration in tomato fruits: Genetic control and maturational effects. J Am Soc Hortic Sci 97:655-658
57. Tanksley SD (1993) Mapping polygenes. Annu Rev Genet 27:205-233
58. Tatusova TA, Madden TL (1999) BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences. FEMS Microbiol Lett 174:247-50
59. Terrier N, Deguilloux C, Sauvage FX, Martinoia E, Romieu C (1998) Proton pumps and anion transport in Vitis vinifera: The inorganic pyrophosphatase plays a predominant role in the energization of the tonoplast. Plant Physiol Biochem 36:367-377
60. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighing, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-80
61. Viruel MA, Messeguer R, de Vicente MC, Garcia-Mas J, Puigdomènech P, Vargas F, Arus P (1995) A linkage map with RFLP and isoenzyme markers for almond. Theor Appl Genet 91:964-971
62. Wang D, Karle R, Iezzoni AF (2000) QTL analysis of flower and fruit traits in sour cherry. Theor Appl Genet 100:535-544
63. Warburton ML, Becerra-Velasquez VL, Goffreda JC, Bliss FA (1996) Utility of RAPD markers in identifying genetic linkages to genes of economic interest in peach. Theor Appl Genet 93:920-925
64. Weber H, Borisjuk L, Heim U, Buchner P, Wobus U (1995) Seed coat-associated invertases of fava bean control both unloading and storage functions: Cloning of cDNAs and cell type-specific expression. Plant Cell 7:1835-1846
65. Williams LE, Lemoine R, Sauer N (2000) Sugar transporters in higher plants - A diversity of roles and complex regulation. Trends Plant Sci 5:283-290
66. Winter H, Huber SC (2000) Regulation of sucrose metabolism in higher plants: Localization and regulation of activity of key enzymes. Critic Rev Plant Sci 19:31-67
67. Yamaki S, Ishikawa K (1986) Roles of four sorbitol related enzymes and invertase in the seasonal alteration of sugar metabolism in apple tissues. J Am Soc Hortic Sci 111:134-137
68. Yen H, Lee S, Tanksley SD, Lanahan MB, Klee HJ, Giovannoni JJ (1995) The tomato never-ripe locus regulates ethylene-inducible gene expression and is linked to a homolog of the Arabidopsis ETR1 gene. Plant Physiol 107:1343-1353
69. Yoshida M (1970) Genetical studies on the fruit quality of peach varieties. I. Acidity. Bull Hortic Res Stn Jpn Ser A 9:1-15
70. Zeng ZB (1994) Precision mapping of quantitative trait loci. Genetics 136:1457-1468