메뉴 건너뛰기




Volumn 78, Issue 13, 2010, Pages 2849-2860

Binding of nonsteroidal anti-inflammatory drugs to Aβ fibril

Author keywords

A peptides; Amyloid fibril; Ibuprofen; Ligand binding; Naproxen; Replica exchange molecular dynamics

Indexed keywords

AMYLOID BETA PROTEIN; IBUPROFEN; NAPHTHALENE; NAPROXEN;

EID: 77957959117     PISSN: 08873585     EISSN: 10970134     Source Type: Journal    
DOI: 10.1002/prot.22804     Document Type: Article
Times cited : (31)

References (59)
  • 1
    • 0347987853 scopus 로고    scopus 로고
    • Folding proteins in fatal ways
    • Selkoe DJ. Folding proteins in fatal ways. Nature 2003;426:900-904.
    • (2003) Nature , vol.426 , pp. 900-904
    • Selkoe, D.J.1
  • 2
    • 0347357617 scopus 로고    scopus 로고
    • Protein folding and misfolding
    • Dobson CM. Protein folding and misfolding. Nature 2003;426:884-890.
    • (2003) Nature , vol.426 , pp. 884-890
    • Dobson, C.M.1
  • 3
    • 33847662852 scopus 로고    scopus 로고
    • Soluble protein oligomers in neurodegeneration: lessons from the Alzheimers amyloid b-peptide
    • Haass C, Selkoe DJ. Soluble protein oligomers in neurodegeneration: lessons from the Alzheimers amyloid b-peptide. Nature Rev Mol Cell Biol 2007;8:101-112.
    • (2007) Nature Rev Mol Cell Biol , vol.8 , pp. 101-112
    • Haass, C.1    Selkoe, D.J.2
  • 4
    • 12244249201 scopus 로고    scopus 로고
    • Self-propagating, molecular-level polymorphism in Alzheimers β-amyloid fibrils
    • Petkova AT, Leapman RD, Guo Z, Yau W-M, Mattson MP, Tycko R. Self-propagating, molecular-level polymorphism in Alzheimers β-amyloid fibrils. Science 2005;307:262-265.
    • (2005) Science , vol.307 , pp. 262-265
    • Petkova, A.T.1    Leapman, R.D.2    Guo, Z.3    Yau, W.-M.4    Mattson, M.P.5    Tycko, R.6
  • 5
    • 30744433878 scopus 로고    scopus 로고
    • Experimental constraints on quaternary structure in Alzheimer's β-amyloid fibrils
    • Petkova AT, Yau W-M, Tycko R. Experimental constraints on quaternary structure in Alzheimer's β-amyloid fibrils. Biochemistry 2006;45:498-512.
    • (2006) Biochemistry , vol.45 , pp. 498-512
    • Petkova, A.T.1    Yau, W.-M.2    Tycko, R.3
  • 7
    • 0034718157 scopus 로고    scopus 로고
    • Alzheimer's amyloid fibrils: structure and assembly
    • Serpell LC. Alzheimer's amyloid fibrils: structure and assembly. Biochim Biophys Acta 2000;1502:16-30.
    • (2000) Biochim Biophys Acta , vol.1502 , pp. 16-30
    • Serpell, L.C.1
  • 10
    • 33646088595 scopus 로고    scopus 로고
    • Probing the pressure-temperature stability of amyloid fibrils provides new insights into their molecular properties
    • Meersman F, Dobson CM. Probing the pressure-temperature stability of amyloid fibrils provides new insights into their molecular properties. Biochim Biophys Acta 2006;1764:452-460.
    • (2006) Biochim Biophys Acta , vol.1764 , pp. 452-460
    • Meersman, F.1    Dobson, C.M.2
  • 11
    • 77949892092 scopus 로고    scopus 로고
    • Mechanisms of action of non-steroidal anti-inflammatory drugs for the prevention of Alzheimer's disease
    • Cole GM, Frautschy SA. Mechanisms of action of non-steroidal anti-inflammatory drugs for the prevention of Alzheimer's disease. CNS Neurol Disord Drug Targets 2010;9:140-148.
    • (2010) CNS Neurol Disord Drug Targets , vol.9 , pp. 140-148
    • Cole, G.M.1    Frautschy, S.A.2
  • 12
    • 43149102747 scopus 로고    scopus 로고
    • Protective effects of NSAIDs on the development of Alzheimer disease
    • Vlad SC, Miller DR, Kowall NR, Felson DT. Protective effects of NSAIDs on the development of Alzheimer disease. Neurology 2008; 70:1672-1677.
    • (2008) Neurology , vol.70 , pp. 1672-1677
    • Vlad, S.C.1    Miller, D.R.2    Kowall, N.R.3    Felson, D.T.4
  • 13
    • 68049118952 scopus 로고    scopus 로고
    • An update on the efficacy of non-steroidal antiinflammatory drugs in Alzheimers disease
    • Imbimbo BP. An update on the efficacy of non-steroidal antiinflammatory drugs in Alzheimers disease. Expert Opin Investig Drugs 2009;18:1147-1168.
    • (2009) Expert Opin Investig Drugs , vol.18 , pp. 1147-1168
    • Imbimbo, B.P.1
  • 14
    • 7244226629 scopus 로고    scopus 로고
    • Non-steroidal anti-inflammatory drugs (NSAIDs) in alzheimers disease: old and new mechanisms of action
    • Gasparini L, Ongini E, Wenk G. Non-steroidal anti-inflammatory drugs (NSAIDs) in alzheimers disease: old and new mechanisms of action. J Neurochem 2004;91:521-536.
    • (2004) J Neurochem , vol.91 , pp. 521-536
    • Gasparini, L.1    Ongini, E.2    Wenk, G.3
  • 15
    • 72849109858 scopus 로고    scopus 로고
    • NSAIDs prevent, but do not reverse, neuronal cell cycle reentry in a mouse model of Alzheimer disease
    • Varvel NH, Bhaskar K, Kounnas MZ., Wagner SL, Yang Y, Lamb BT, Herrup K. NSAIDs prevent, but do not reverse, neuronal cell cycle reentry in a mouse model of Alzheimer disease. J Clin Invest 2009;119:3692-3702.
    • (2009) J Clin Invest , vol.119 , pp. 3692-3702
    • Varvel, N.H.1    Bhaskar, K.2    Kounnas, M.Z.3    Wagner, S.L.4    Yang, Y.5    Lamb, B.T.6    Herrup, K.7
  • 16
    • 0037475148 scopus 로고    scopus 로고
    • In vitro detection of (s)-naproxen and ibuprofen binding to plaques in the Alzheimer's brain using the positron emission tomography molecular imaging probe 2-(1-{6-[(2-[18F]fluoroethyl)(methyl)amino]-2-naphthyl}ethylidene) malononitrile
    • Agdeppa ED, Kepe V, Petric A, Satyamurthy N, Liu J, Huang S-C, Small GW, Cole GM, Barrio JR. In vitro detection of (s)-naproxen and ibuprofen binding to plaques in the Alzheimer's brain using the positron emission tomography molecular imaging probe 2-(1-{6-[(2-[18F]fluoroethyl)(methyl)amino]-2-naphthyl}ethylidene) malononitrile. Neuroscience 2003;117:723-730.
    • (2003) Neuroscience , vol.117 , pp. 723-730
    • Agdeppa, E.D.1    Kepe, V.2    Petric, A.3    Satyamurthy, N.4    Liu, J.5    Huang, S.-C.6    Small, G.W.7    Cole, G.M.8    Barrio, J.R.9
  • 17
    • 27144513779 scopus 로고    scopus 로고
    • Non-steroidal antiinflammatory drugs have anti-amyloidogenic effects for Alzheimer's β-amyloid fibrils in vitro
    • Hirohata M, Ono K, Naiki H, Yamada M. Non-steroidal antiinflammatory drugs have anti-amyloidogenic effects for Alzheimer's β-amyloid fibrils in vitro. Neuropharmacology 2005;49:1088-1099.
    • (2005) Neuropharmacology , vol.49 , pp. 1088-1099
    • Hirohata, M.1    Ono, K.2    Naiki, H.3    Yamada, M.4
  • 18
    • 0035968743 scopus 로고    scopus 로고
    • Aspirin and non-steroidal anti-inflammatory drugs inhibit amyloid βbaggregation
    • Thomas T, Nadackal TG, Thomas K. Aspirin and non-steroidal anti-inflammatory drugs inhibit amyloid βbaggregation. NeuroReport 2001;12:3263-3267.
    • (2001) NeuroReport , vol.12 , pp. 3263-3267
    • Thomas, T.1    Nadackal, T.G.2    Thomas, K.3
  • 19
    • 33748689799 scopus 로고    scopus 로고
    • Simulations as analytical tools to understand protein aggregation and predict amyloid conformation
    • Ma B, Nussinov R. Simulations as analytical tools to understand protein aggregation and predict amyloid conformation. Curr Opin Struct Biol 2006;10:445-452.
    • (2006) Curr Opin Struct Biol , vol.10 , pp. 445-452
    • Ma, B.1    Nussinov, R.2
  • 21
    • 10844230140 scopus 로고    scopus 로고
    • Replica exchange molecular dynamics simulations of amyloid peptide aggregation
    • Cecchini M, Rao F, Seeber M, Caflisch A. Replica exchange molecular dynamics simulations of amyloid peptide aggregation. J Chem Phys 2004;121:10748-10756.
    • (2004) J Chem Phys , vol.121 , pp. 10748-10756
    • Cecchini, M.1    Rao, F.2    Seeber, M.3    Caflisch, A.4
  • 22
    • 33846036362 scopus 로고    scopus 로고
    • Monomer adds to preformed structured oligomers of Aβ -peptides by a twostage dock-lock mechanism
    • Nguyen PH, Li MS, Stock G, Straub JE, Thirumalai D. Monomer adds to preformed structured oligomers of Aβ -peptides by a twostage dock-lock mechanism. Proc Natl Acad Sci USA 2007;104:111-116.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 111-116
    • Nguyen, P.H.1    Li, M.S.2    Stock, G.3    Straub, J.E.4    Thirumalai, D.5
  • 23
    • 50249168222 scopus 로고    scopus 로고
    • Role of water in mediating the assembly of Alzheimer amyloid-beta abeta16-22 protofilaments
    • doi: 10. 1021/ja8017303
    • Krone MG, Hua L, Soto P, Zhou R, Berne BJ, Shea J-E. Role of water in mediating the assembly of Alzheimer amyloid-beta abeta16-22 protofilaments. J Am Chem Soc doi: 10.1021/ja8017303, 2008;30:11066-11072.
    • (2008) J Am Chem Soc , vol.30 , pp. 11066-11072
    • Krone, M.G.1    Hua, L.2    Soto, P.3    Zhou, R.4    Berne, B.J.5    Shea, J.-E.6
  • 24
    • 58849114585 scopus 로고    scopus 로고
    • Replica exchange simulations of the thermodynamics of Aβ fibril growth
    • Takeda T, Klimov DK. Replica exchange simulations of the thermodynamics of Aβ fibril growth. Biophys J 2009;96:442-452.
    • (2009) Biophys J , vol.96 , pp. 442-452
    • Takeda, T.1    Klimov, D.K.2
  • 25
    • 34247637243 scopus 로고    scopus 로고
    • Structure and dynamics of parallel bsheets, hydrophobic core, and loops in Alzheimer's Aβ fibrils
    • Buchete N-V, Hummer G. Structure and dynamics of parallel bsheets, hydrophobic core, and loops in Alzheimer's Aβ fibrils. Biophys J 2007;92:3032-3039.
    • (2007) Biophys J , vol.92 , pp. 3032-3039
    • Buchete, N.-V.1    Hummer, G.2
  • 26
    • 36148983867 scopus 로고    scopus 로고
    • 17-42 fibril architecture: tight intermolecular sheet-sheet association and intramolecular hydrated cavities
    • 17-42 fibril architecture: tight intermolecular sheet-sheet association and intramolecular hydrated cavities. Biophys J 2007;93:3046-3057.
    • (2007) Biophys J , vol.93 , pp. 3046-3057
    • Zheng, J.1    Jang, H.2    Ma, B.3    Tsai, C.-J.4    Nussinov, R.5
  • 29
    • 66149189211 scopus 로고    scopus 로고
    • Thermodynamics and dynamics of amyloid peptide oligomerization are sequence dependent
    • Lu Y, Derreumaux P, Guo Z, Mousseau N, Wei G. Thermodynamics and dynamics of amyloid peptide oligomerization are sequence dependent. Proteins 2009;75:954-963.
    • (2009) Proteins , vol.75 , pp. 954-963
    • Lu, Y.1    Derreumaux, P.2    Guo, Z.3    Mousseau, N.4    Wei, G.5
  • 30
    • 61549102795 scopus 로고    scopus 로고
    • What determines the structure and stability of KFFE monomers, dimers and protofibrils?
    • Bellesia G, Shea J-E. What determines the structure and stability of KFFE monomers, dimers, and protofibrils? Biophys J 2009;96:875-886.
    • (2009) Biophys J , vol.96 , pp. 875-886
    • Bellesia, G.1    Shea, J.-E.2
  • 31
    • 69549145714 scopus 로고    scopus 로고
    • Klimov DK. Interpeptide interactions induce helix to strand structural transition in Aβ peptides
    • Takeda T, Klimov DK. Interpeptide interactions induce helix to strand structural transition in Aβ peptides. Proteins 2009;77:1-13.
    • (2009) Proteins , vol.77 , pp. 1-13
    • Takeda, T.1
  • 32
    • 56849108519 scopus 로고    scopus 로고
    • The Alzheimer β-amyloid (Aβ 1-39) dimer in an implicit solvent
    • Nandel FS, Anand P, Hansmann UHE. The Alzheimer β-amyloid (Aβ 1-39) dimer in an implicit solvent. J Chem Phys 2008;129:195102.
    • (2008) J Chem Phys , vol.129 , pp. 195102
    • Nandel, F.S.1    Anand, P.2    Hansmann, U.H.E.3
  • 33
    • 77950219248 scopus 로고    scopus 로고
    • Elucidation of amyloid β-protein oligomerization mechanisms: Discrete molecular dynamics study
    • Urbanc B, Betnel M, Cruz L, Bitan G, Teplow DB. Elucidation of amyloid β-protein oligomerization mechanisms: Discrete molecular dynamics study. J Am Chem Soc 2010;132:4266-4280.
    • (2010) J Am Chem Soc , vol.132 , pp. 4266-4280
    • Urbanc, B.1    Betnel, M.2    Cruz, L.3    Bitan, G.4    Teplow, D.B.5
  • 34
    • 63449131863 scopus 로고    scopus 로고
    • 9, 10- Anthraquinone hinders β-aggregation: how does a small molecule interfere with Aβ-peptide amyloid fibrillation?
    • Convertino M, Pellarin R, Catto M, Carotti A, Caflisch A. 9,10- Anthraquinone hinders β-aggregation: how does a small molecule interfere with Aβ-peptide amyloid fibrillation? Protein Sci 2009; 18:792-800.
    • (2009) Protein Sci , vol.18 , pp. 792-800
    • Convertino, M.1    Pellarin, R.2    Catto, M.3    Carotti, A.4    Caflisch, A.5
  • 35
    • 70350020364 scopus 로고    scopus 로고
    • Molecular dynamics simulations of ibuprofen binding to Aβ peptides
    • Raman EP, Takeda T, Klimov DK. Molecular dynamics simulations of ibuprofen binding to Aβ peptides. Biophys J 2009;97:2070-2079.
    • (2009) Biophys J , vol.97 , pp. 2070-2079
    • Raman, E.P.1    Takeda, T.2    Klimov, D.K.3
  • 36
    • 77952996946 scopus 로고    scopus 로고
    • Molecular dynamics simulations of anti-aggregation effect of ibuprofen
    • Chang WE, Takeda T, Raman EP, Klimov DK. Molecular dynamics simulations of anti-aggregation effect of ibuprofen. Biophys J 2010;98:2662-2670.
    • (2010) Biophys J , vol.98 , pp. 2662-2670
    • Chang, W.E.1    Takeda, T.2    Raman, E.P.3    Klimov, D.K.4
  • 38
    • 0036138028 scopus 로고    scopus 로고
    • Evaluation of a fast implicit solvent model for molecular dynamics simulations
    • Ferrara P, Apostolakis J, Caflisch A. Evaluation of a fast implicit solvent model for molecular dynamics simulations. Proteins 2002;46: 24-33.
    • (2002) Proteins , vol.46 , pp. 24-33
    • Ferrara, P.1    Apostolakis, J.2    Caflisch, A.3
  • 39
    • 68949122827 scopus 로고    scopus 로고
    • Probing energetics of abeta fibril elongation by molecular dynamics simulations
    • Takeda T, Klimov DK. Probing energetics of abeta fibril elongation by molecular dynamics simulations. Biophys J 2009;96:4428-4437.
    • (2009) Biophys J , vol.96 , pp. 4428-4437
    • Takeda, T.1    Klimov, D.K.2
  • 40
    • 67650079408 scopus 로고    scopus 로고
    • Probing the effect of amino-terminal truncation for abeta1-40 peptides
    • Takeda T, Klimov DK. Probing the effect of amino-terminal truncation for abeta1-40 peptides. J Phys Chem B 2009;113:6692-6702.
    • (2009) J Phys Chem B , vol.113 , pp. 6692-6702
    • Takeda, T.1    Klimov, D.K.2
  • 41
    • 33744831968 scopus 로고    scopus 로고
    • Polymorphic fibril formation by residues 10-40 of the Alzheimer's beta-amyloid peptide
    • Paravastu AK, Petkova AT, Tycko R. Polymorphic fibril formation by residues 10-40 of the Alzheimer's beta-amyloid peptide. Biophys J 2006;90:4618-4629.
    • (2006) Biophys J , vol.90 , pp. 4618-4629
    • Paravastu, A.K.1    Petkova, A.T.2    Tycko, R.3
  • 42
    • 0041816383 scopus 로고    scopus 로고
    • Elucidation of primary structure elements controlling early amyloid β-protein oligomerization
    • Bitan G, Vollers SS, Teplow DB. Elucidation of primary structure elements controlling early amyloid β-protein oligomerization. J Biol Chem 2003;278:34882-34889.
    • (2003) J Biol Chem , vol.278 , pp. 34882-34889
    • Bitan, G.1    Vollers, S.S.2    Teplow, D.B.3
  • 43
    • 15544388942 scopus 로고    scopus 로고
    • Hydrogen-deuterium (H/D) exchange mapping of Aβ1-40 amyloid fibril secondary structure using nuclear magnetic resonance spectroscopy
    • Whittemore NA., Mishra R, Kheterpal I, Williams AD, Wetzel R, Serpersu EH. Hydrogen-deuterium (H/D) exchange mapping of Aβ1-40 amyloid fibril secondary structure using nuclear magnetic resonance spectroscopy. Biochemistry 2005;44:4434-4441
    • (2005) Biochemistry , vol.44 , pp. 4434-4441
    • Whittemore, N.A.1    Mishra, R.2    Kheterpal, I.3    Williams, A.D.4    Wetzel, R.5    Serpersu, E.H.6
  • 44
    • 0033613906 scopus 로고    scopus 로고
    • Native proteins are surface-molten solids: application of the Lindemann criterion for the solid versus liquid state
    • Zhou Y, Vitkup D, Karplus M. Native proteins are surface-molten solids: application of the Lindemann criterion for the solid versus liquid state. J Mol Biol 1999;285:1371-1375.
    • (1999) J Mol Biol , vol.285 , pp. 1371-1375
    • Zhou, Y.1    Vitkup, D.2    Karplus, M.3
  • 46
    • 33645988190 scopus 로고    scopus 로고
    • Organofluorine inhibitors of amyloid fibrillogenesis
    • Torok M, Abid M, Mhadgut SC, Torok B. Organofluorine inhibitors of amyloid fibrillogenesis. Biochemistry 2006;45:5377-5383.
    • (2006) Biochemistry , vol.45 , pp. 5377-5383
    • Torok, M.1    Abid, M.2    Mhadgut, S.C.3    Torok, B.4
  • 47
    • 0001616080 scopus 로고    scopus 로고
    • Replica-exchange molecular dynamics method for protein folding
    • Sugita Y. Okamoto Y. Replica-exchange molecular dynamics method for protein folding. Chem Phys Lett 1999;114:141-151.
    • (1999) Chem Phys Lett , vol.114 , pp. 141-151
    • Sugita, Y.1    Okamoto, Y.2
  • 48
    • 0020997912 scopus 로고
    • Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features
    • Kabsch W, Sander C. Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 1983;22:2577-2637.
    • (1983) Biopolymers , vol.22 , pp. 2577-2637
    • Kabsch, W.1    Sander, C.2
  • 49
    • 0033134665 scopus 로고    scopus 로고
    • Structural details of urea binding to barnase: a molecular dynamics analysis
    • Caflisch A, Karplus M. Structural details of urea binding to barnase: a molecular dynamics analysis. Structure 1999;7:477-488.
    • (1999) Structure , vol.7 , pp. 477-488
    • Caflisch, A.1    Karplus, M.2
  • 50
    • 0015222647 scopus 로고
    • The interpretation of protein structures: estimation of static accessibility
    • Lee B, Richards FM. The interpretation of protein structures: estimation of static accessibility. J Mol Biol 1971;55:379-400.
    • (1971) J Mol Biol , vol.55 , pp. 379-400
    • Lee, B.1    Richards, F.M.2
  • 51
    • 33646987405 scopus 로고
    • Optimized Monte Carlo data analysis
    • Ferrenberg AM, Swendsen RH. Optimized Monte Carlo data analysis. Phys Rev Lett 1989;63:1195-1198.
    • (1989) Phys Rev Lett , vol.63 , pp. 1195-1198
    • Ferrenberg, A.M.1    Swendsen, R.H.2
  • 54
    • 0035893245 scopus 로고    scopus 로고
    • Binding characteristics of radiofluorinated 6-dialkylamino-2-naphthylethylidene derivatives as positron emission tomography imaging probes for β-amyloid plaques in Alzheimers disease
    • Agdeppa E, Kepe V, Liu J, Flores-Torres S, Satyamurthy N, Petric A, Cole GM, Small GW, Huang S-C, Barrio JR. Binding characteristics of radiofluorinated 6-dialkylamino-2-naphthylethylidene derivatives as positron emission tomography imaging probes for β-amyloid plaques in Alzheimers disease. J Neurosci 2001;21:1-5.
    • (2001) J Neurosci , vol.21 , pp. 1-5
    • Agdeppa, E.1    Kepe, V.2    Liu, J.3    Flores-Torres, S.4    Satyamurthy, N.5    Petric, A.6    Cole, G.M.7    Small, G.W.8    Huang, S.-C.9    Barrio, J.R.10
  • 55
    • 84954358136 scopus 로고    scopus 로고
    • The binding of thioflavin T and its neutral analog BTA-1 to protofibrils of the Alzheimer's disease a β16-22 peptide probed by molecular dynamics simulations
    • Wu C, Wang Z, Lei H, Duan Y, Bowers MT, Shea J-E. The binding of thioflavin T and its neutral analog BTA-1 to protofibrils of the Alzheimer's disease a β16-22 peptide probed by molecular dynamics simulations. J Mol Biol 2008;384:718-729.
    • (2008) J Mol Biol , vol.384 , pp. 718-729
    • Wu, C.1    Wang, Z.2    Lei, H.3    Duan, Y.4    Bowers, M.T.5    Shea, J.-E.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.