Updates to the RMAP short-read mapping software

Bioinformatics

Volumn 25, Issue 21, 2009, Pages 2841-2842

  Smith, Andrew D ^a   Chung, Wen Yu ^b   Hodges, Emily ^b   Kendall, Jude ^b   Hannon, Greg ^b   Hicks, James ^b   Xuan, Zhenyu ^b   Zhang, Michael Q ^b  

^a UNIVERSITY OF SOUTHERN CALIFORNIA   (United States)

^b Howard Hughes Medical Institute Cold Spring Harbor Laboratory Cold Spring Harbor   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BISULFITE;

ACCURACY; ALGORITHM; ARTICLE; COMPUTER PROGRAM; CONTROLLED STUDY; CPG ISLAND; HUMAN GENOME; METHYLATION; PRIORITY JOURNAL; SENSITIVITY AND SPECIFICITY; SEQUENCE ANALYSIS;

ALGORITHMS; COMPUTATIONAL BIOLOGY; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SEQUENCE ANALYSIS, RNA; SOFTWARE;

EID: 70350697851     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btp533     Document Type: Article

References (9)

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3. Li,H. et al. (2008) Mapping short dna sequencing reads and calling variants using mapping quality scores. Genome Res., 18, 1851-1858.
4. Li,R. et al. SOAP: Short oligonucleotide alignment program. Bioinformatics, 24, 713-714.
5. Lin,H. et al. (2008) Zoom! zillions of oligos mapped. Bioinformatics, 24, 2431-2437.
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7. Schatz,M.C. (2009) CloudBurst: Highly sensitive read mapping with mapReduce. Bioinformatics, 25, 1363-1369.
8. Smith,A. et al. (2008) Using quality scores and longer reads improves accuracy of Solexa read mapping. BMC bioinformatics, 9 128.
9. Yanovsky,V. et al. (2008) Read mapping algorithms for single molecule sequencing data. In Proceedings of the 8th InternationalWorkshop on Algorithms in Bioinformatics. Vol. 5251, LNCS, Springer, pp. 38-49.