메뉴 건너뛰기




Volumn 156, Issue 10, 2010, Pages 2933-2943

Functional roles for the GerE-family carboxylterminal domains of nitrate response regulators NarL and NarP of Escherichia coli K-12

Author keywords

[No Author keywords available]

Indexed keywords

ARGININE; HELIX LOOP HELIX PROTEIN; NITRATE; PROTEIN FIXJ; PROTEIN GERE; PROTEIN NARL; PROTEIN NARP; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR LUXR; UNCLASSIFIED DRUG; VALINE;

EID: 77957859781     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/mic.0.040469-0     Document Type: Article
Times cited : (14)

References (52)
  • 1
    • 15944379232 scopus 로고    scopus 로고
    • The many faces of the helix-turn-helix domain: Transcription regulation and beyond
    • Aravind, L., Anantharaman, V., Balaji, S., Babu, M. M. & Iyer, L. M. (2005). The many faces of the helix-turn-helix domain: transcription regulation and beyond. FEMS Microbiol Rev 29, 231-262.
    • (2005) FEMS Microbiol Rev , vol.29 , pp. 231-262
    • Aravind, L.1    Anantharaman, V.2    Balaji, S.3    Babu, M.M.4    Iyer, L.M.5
  • 3
    • 1842506160 scopus 로고    scopus 로고
    • Regulation at complex bacterial promoters: How bacteria use different promoter organizations to produce different regulatory outcomes
    • Barnard, A., Wolfe, A. & Busby, S. (2004). Regulation at complex bacterial promoters: how bacteria use different promoter organizations to produce different regulatory outcomes. Curr Opin Microbiol 7, 102-108.
    • (2004) Curr Opin Microbiol , vol.7 , pp. 102-108
    • Barnard, A.1    Wolfe, A.2    Busby, S.3
  • 4
    • 0025778670 scopus 로고
    • Construction and properties of a family of pACYC184-derived cloning vectors compatible with pBR322 and its derivatives
    • Bartolomé, B., Jubete, Y., Martinez, E. & de la Cruz, F. (1991). Construction and properties of a family of pACYC184-derived cloning vectors compatible with pBR322 and its derivatives. Gene 102, 75-78.
    • (1991) Gene , vol.102 , pp. 75-78
    • Bartolomé, B.1    Jubete, Y.2    Martinez, E.3    De La Cruz, F.4
  • 6
    • 0017807890 scopus 로고
    • Construction and characterization of amplifiable multicopy DNA cloning vehicles derived from the P15A cryptic miniplasmid
    • Chang, A. C. Y. & Cohen, S. N. (1978). Construction and characterization of amplifiable multicopy DNA cloning vehicles derived from the P15A cryptic miniplasmid. J Bacteriol 134, 1141-1156.
    • (1978) J Bacteriol , vol.134 , pp. 1141-1156
    • Chang, A.C.Y.1    Cohen, S.N.2
  • 7
    • 0026323326 scopus 로고
    • The C-terminal region of the Vibrio fischeri LuxR protein contains an inducer-independent lux gene activating domain
    • Choi, S. H. & Greenberg, E. P. (1991). The C-terminal region of the Vibrio fischeri LuxR protein contains an inducer-independent lux gene activating domain. Proc Natl Acad Sci U S A 88, 11115-11119.
    • (1991) Proc Natl Acad Sci U S A , vol.88 , pp. 11115-11119
    • Choi, S.H.1    Greenberg, E.P.2
  • 8
    • 67651205869 scopus 로고    scopus 로고
    • Identification of amino acid residues of the pheromone-binding domain of the transcription factor TraR that are required for positive control
    • Costa, E. D., Cho, H. & Winans, S. C. (2009). Identification of amino acid residues of the pheromone-binding domain of the transcription factor TraR that are required for positive control. Mol Microbiol 73, 341-351.
    • (2009) Mol Microbiol , vol.73 , pp. 341-351
    • Costa, E.D.1    Cho, H.2    Winans, S.C.3
  • 9
    • 0036134755 scopus 로고    scopus 로고
    • Crater, D. L. & Moran, C. P., Jr (2002). Two regions of GerE required for promoter activation in Bacillus subtilis. J Bacteriol 184, 241-249.
    • (2002) J Bacteriol , vol.184 , pp. 241-249
    • Crater, D.L.1    Moran Jr., C.P.2
  • 10
    • 0030868258 scopus 로고    scopus 로고
    • Differential regulation by the homologous response regulators NarL and NarP of Escherichia coli K-12 depends on DNA binding site arrangement
    • Darwin, A. J., Tyson, K. L., Busby, S. J. & Stewart, V. (1997). Differential regulation by the homologous response regulators NarL and NarP of Escherichia coli K-12 depends on DNA binding site arrangement. Mol Microbiol 25, 583-595.
    • (1997) Mol Microbiol , vol.25 , pp. 583-595
    • Darwin, A.J.1    Tyson, K.L.2    Busby, S.J.3    Stewart, V.4
  • 11
    • 0034612342 scopus 로고    scopus 로고
    • One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
    • Datsenko, K. A. & Wanner, B. L. (2000). One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci U S A 97, 6640-6645.
    • (2000) Proc Natl Acad Sci U S A , vol.97 , pp. 6640-6645
    • Datsenko, K.A.1    Wanner, B.L.2
  • 13
    • 0025108798 scopus 로고
    • Nitrate regulation of anaerobic respiratory gene expression in narX deletion mutants of Escherichia coli K-12
    • Egan, S. M. & Stewart, V. (1990). Nitrate regulation of anaerobic respiratory gene expression in narX deletion mutants of Escherichia coli K-12. J Bacteriol 172, 5020-5029.
    • (1990) J Bacteriol , vol.172 , pp. 5020-5029
    • Egan, S.M.1    Stewart, V.2
  • 14
    • 0035185549 scopus 로고    scopus 로고
    • Quorum sensing in Vibrio fischeri: Analysis of the LuxR DNA binding region by alanine-scanning mutagenesis
    • Egland, K. A. & Greenberg, E. P. (2001). Quorum sensing in Vibrio fischeri: analysis of the LuxR DNA binding region by alanine-scanning mutagenesis. J Bacteriol 183, 382-386.
    • (2001) J Bacteriol , vol.183 , pp. 382-386
    • Egland, K.A.1    Greenberg, E.P.2
  • 15
    • 0037168492 scopus 로고    scopus 로고
    • Effect of phosphorylation on the interdomain interaction of the response regulator, NarL
    • Eldridge, A. M., Kang, H. S., Johnson, E., Gunsalus, R. & Dahlquist, F. W. (2002). Effect of phosphorylation on the interdomain interaction of the response regulator, NarL. Biochemistry 41, 15173-15180.
    • (2002) Biochemistry , vol.41 , pp. 15173-15180
    • Eldridge, A.M.1    Kang, H.S.2    Johnson, E.3    Gunsalus, R.4    Dahlquist, F.W.5
  • 16
    • 33744983969 scopus 로고    scopus 로고
    • Structural classification of bacterial response regulators: Diversity of output domains and domain combinations
    • Galperin, M. Y. (2006). Structural classification of bacterial response regulators: diversity of output domains and domain combinations. J Bacteriol 188, 4169-4182.
    • (2006) J Bacteriol , vol.188 , pp. 4169-4182
    • Galperin, M.Y.1
  • 17
    • 0035682064 scopus 로고    scopus 로고
    • Conditional-replication, integration, excision, and retrieval plasmid-host systems for gene structure-function studies of bacteria
    • Haldimann, A. & Wanner, B. L. (2001). Conditional-replication, integration, excision, and retrieval plasmid-host systems for gene structure-function studies of bacteria. J Bacteriol 183, 6384-6393.
    • (2001) J Bacteriol , vol.183 , pp. 6384-6393
    • Haldimann, A.1    Wanner, B.L.2
  • 18
    • 0025371704 scopus 로고
    • Finding protein similarities with nucleotide sequence databases
    • Henikoff, S., Wallace, J. C. & Brown, J. P. (1990). Finding protein similarities with nucleotide sequence databases. Methods Enzymol 183, 111-132.
    • (1990) Methods Enzymol , vol.183 , pp. 111-132
    • Henikoff, S.1    Wallace, J.C.2    Brown, J.P.3
  • 19
    • 0025775119 scopus 로고
    • Modular structure of FixJ: Homology of the transcriptional activator domain with the -35 binding domain of sigma factors
    • Kahn, D. & Ditta, G. (1991). Modular structure of FixJ: homology of the transcriptional activator domain with the -35 binding domain of sigma factors. Mol Microbiol 5, 987-997.
    • (1991) Mol Microbiol , vol.5 , pp. 987-997
    • Kahn, D.1    Ditta, G.2
  • 20
    • 0032457906 scopus 로고    scopus 로고
    • Oxygen sensing by the global regulator, FNR: The role of the iron-sulfur cluster
    • Kiley, P. J. & Beinert, H. (1998). Oxygen sensing by the global regulator, FNR: the role of the iron-sulfur cluster. FEMS Microbiol Rev 22, 341-352.
    • (1998) FEMS Microbiol Rev , vol.22 , pp. 341-352
    • Kiley, P.J.1    Beinert, H.2
  • 21
    • 27744470763 scopus 로고    scopus 로고
    • Solution structure of the C-terminal transcriptional activator domain of FixJ from Sinorhizobium meliloti and its recognition of the fixK promoter
    • Kurashima-Ito, K., Kasai, Y., Hosono, K., Tamura, K., Oue, S., Isogai, M., Ito, Y., Nakamura, H. & Shiro, Y. (2005). Solution structure of the C-terminal transcriptional activator domain of FixJ from Sinorhizobium meliloti and its recognition of the fixK promoter. Biochemistry 44, 14835-14844.
    • (2005) Biochemistry , vol.44 , pp. 14835-14844
    • Kurashima-Ito, K.1    Kasai, Y.2    Hosono, K.3    Tamura, K.4    Oue, S.5    Isogai, M.6    Ito, Y.7    Nakamura, H.8    Shiro, Y.9
  • 22
    • 0033639260 scopus 로고    scopus 로고
    • FNR-dependent activation of the class II dmsA and narG promoters of Escherichia coli requires FNR-activating regions 1 and 3
    • Lamberg, K. E. & Kiley, P. J. (2000). FNR-dependent activation of the class II dmsA and narG promoters of Escherichia coli requires FNR-activating regions 1 and 3. Mol Microbiol 38, 817-827.
    • (2000) Mol Microbiol , vol.38 , pp. 817-827
    • Lamberg, K.E.1    Kiley, P.J.2
  • 23
    • 0026625770 scopus 로고
    • Localization of upstream sequence elements required for nitrate and anaerobic induction of fdn (formate dehydrogenase-N) operon expression in Escherichia coli K-12
    • Li, J. & Stewart, V. (1992). Localization of upstream sequence elements required for nitrate and anaerobic induction of fdn (formate dehydrogenase-N) operon expression in Escherichia coli K-12. J Bacteriol 174, 4935-4942.
    • (1992) J Bacteriol , vol.174 , pp. 4935-4942
    • Li, J.1    Stewart, V.2
  • 25
    • 35649003869 scopus 로고    scopus 로고
    • Activation of yeaR-yoaG operon transcription by the nitrate-responsive regulator NarL is independent of oxygen-responsive regulator Fnr in Escherichia coli K-12
    • Lin, H.-Y., Bledsoe, P. J. & Stewart, V. (2007). Activation of yeaR-yoaG operon transcription by the nitrate-responsive regulator NarL is independent of oxygen-responsive regulator Fnr in Escherichia coli K-12. J Bacteriol 189, 7539-7548.
    • (2007) J Bacteriol , vol.189 , pp. 7539-7548
    • Lin, H.-Y.1    Bledsoe, P.J.2    Stewart, V.3
  • 29
    • 27644557269 scopus 로고    scopus 로고
    • Primary and secondary modes of DNA recognition by the NarL two-component response regulator
    • Maris, A. E., Kaczor-Grzeskowiak, M., Ma, Z., Kopka, M. L., Gunsalus, R. P. & Dickerson, R. E. (2005). Primary and secondary modes of DNA recognition by the NarL two-component response regulator. Biochemistry 44, 14538-14552.
    • (2005) Biochemistry , vol.44 , pp. 14538-14552
    • Maris, A.E.1    Kaczor-Grzeskowiak, M.2    Ma, Z.3    Kopka, M.L.4    Gunsalus, R.P.5    Dickerson, R.E.6
  • 30
  • 31
    • 0028240995 scopus 로고
    • Liberation of an interaction domain from the phosphotransfer region of CheA, a signaling kinase of Escherichia coli
    • Morrison, T. B. & Parkinson, J. S. (1994). Liberation of an interaction domain from the phosphotransfer region of CheA, a signaling kinase of Escherichia coli. Proc Natl Acad Sci U S A 91, 5485-5489.
    • (1994) Proc Natl Acad Sci U S A , vol.91 , pp. 5485-5489
    • Morrison, T.B.1    Parkinson, J.S.2
  • 32
    • 33846094130 scopus 로고    scopus 로고
    • New insights into the regulatory mechanisms of the LuxR family of quorum sensing regulators
    • Nasser, W. & Reverchon, S. (2007). New insights into the regulatory mechanisms of the LuxR family of quorum sensing regulators. Anal Bioanal Chem 387, 381-390.
    • (2007) Anal Bioanal Chem , vol.387 , pp. 381-390
    • Nasser, W.1    Reverchon, S.2
  • 33
    • 74349106185 scopus 로고    scopus 로고
    • Asymmetric cross-regulation between the nitrate-responsive NarX-NarL and NarQ-NarP two-component regulatory systems from Escherichia coli K-12
    • Noriega, C. E., Lin, H.-Y., Chen, L.-L., Williams, S. B. & Stewart, V. (2010). Asymmetric cross-regulation between the nitrate-responsive NarX-NarL and NarQ-NarP two-component regulatory systems from Escherichia coli K-12. Mol Microbiol 75, 394-412.
    • (2010) Mol Microbiol , vol.75 , pp. 394-412
    • Noriega, C.E.1    Lin, H.-Y.2    Chen, L.-L.3    Williams, S.B.4    Stewart, V.5
  • 34
    • 3843091794 scopus 로고    scopus 로고
    • Chemical communication in proteobacteria: Biochemical and structural studies of signal synthases and receptors required for intercellular signalling
    • Pappas, K. M., Weingart, C. L. & Winans, S. C. (2004). Chemical communication in proteobacteria: biochemical and structural studies of signal synthases and receptors required for intercellular signalling. Mol Microbiol 53, 755-769.
    • (2004) Mol Microbiol , vol.53 , pp. 755-769
    • Pappas, K.M.1    Weingart, C.L.2    Winans, S.C.3
  • 35
    • 70349909321 scopus 로고    scopus 로고
    • N- and C-terminal regions of the quorum-sensing activator TraR cooperate in interactions with the alpha and sigma-70 components of RNA polymerase
    • Qin, Y., Keenan, C. & Farrand, S. K. (2009). N- and C-terminal regions of the quorum-sensing activator TraR cooperate in interactions with the alpha and sigma-70 components of RNA polymerase. Mol Microbiol 74, 330-346.
    • (2009) Mol Microbiol , vol.74 , pp. 330-346
    • Qin, Y.1    Keenan, C.2    Farrand, S.K.3
  • 36
    • 0026705854 scopus 로고
    • Either of two functionally redundant sensor proteins, NarX and NarQ, is sufficient for nitrate regulation in Escherichia coli K-12
    • Rabin, R. S. & Stewart, V. (1992). Either of two functionally redundant sensor proteins, NarX and NarQ, is sufficient for nitrate regulation in Escherichia coli K-12. Proc Natl Acad Sci U S A 89, 8419-8423.
    • (1992) Proc Natl Acad Sci U S A , vol.89 , pp. 8419-8423
    • Rabin, R.S.1    Stewart, V.2
  • 37
    • 0028960228 scopus 로고
    • Inhibition of transcription initiation by lac repressor
    • Schlax, P. J., Capp, M. W. & Record, M. T., Jr (1995). Inhibition of transcription initiation by lac repressor. J Mol Biol 245, 331-350.
    • (1995) J Mol Biol , vol.245 , pp. 331-350
    • Schlax, P.J.1    Capp, M.W.2    Record Jr., M.T.3
  • 38
    • 66549117119 scopus 로고    scopus 로고
    • Competition between NarL-dependent activation and Fis-dependent repression controls expression from the Escherichia coli yeaR and ogt promoters
    • Squire, D. J., Xu, M., Cole, J. A., Busby, S. J. & Browning, D. F. (2009). Competition between NarL-dependent activation and Fis-dependent repression controls expression from the Escherichia coli yeaR and ogt promoters. Biochem J 420, 249-257.
    • (2009) Biochem J , vol.420 , pp. 249-257
    • Squire, D.J.1    Xu, M.2    Cole, J.A.3    Busby, S.J.4    Browning, D.F.5
  • 39
    • 0037377805 scopus 로고    scopus 로고
    • Synthetic lac operator substitutions to study the nitrate- and nitrite-responsive NarX-NarL and NarQ-NarP two-component regulatory systems of Escherichia coli K-12
    • Stewart, V. & Bledsoe, P. J. (2003). Synthetic lac operator substitutions to study the nitrate- and nitrite-responsive NarX-NarL and NarQ-NarP two-component regulatory systems of Escherichia coli K-12. J Bacteriol 185, 2104-2111.
    • (2003) J Bacteriol , vol.185 , pp. 2104-2111
    • Stewart, V.1    Bledsoe, P.J.2
  • 40
    • 26444433328 scopus 로고    scopus 로고
    • Fnr-, NarP- and NarL-dependent regulation of transcription initiation from the Haemophilus influenzae Rd napF (periplasmic nitrate reductase) promoter in Escherichia coli K-12
    • Stewart, V. & Bledsoe, P. J. (2005). Fnr-, NarP- and NarL-dependent regulation of transcription initiation from the Haemophilus influenzae Rd napF (periplasmic nitrate reductase) promoter in Escherichia coli K-12. J Bacteriol 187, 6928-6935.
    • (2005) J Bacteriol , vol.187 , pp. 6928-6935
    • Stewart, V.1    Bledsoe, P.J.2
  • 41
    • 37549070293 scopus 로고    scopus 로고
    • Substitutions at auxiliary operator O3 enhance repression by nitrate-responsive regulator NarL at synthetic lac control regions in Escherichia coli K-12
    • Stewart, V. & Bledsoe, P. J. (2008). Substitutions at auxiliary operator O3 enhance repression by nitrate-responsive regulator NarL at synthetic lac control regions in Escherichia coli K-12. J Bacteriol 190, 428-433.
    • (2008) J Bacteriol , vol.190 , pp. 428-433
    • Stewart, V.1    Bledsoe, P.J.2
  • 42
    • 0023991777 scopus 로고
    • Identification and expression of genes narL and narX of the nar (nitrate reductase) locus in Escherichia coli K-12
    • Stewart, V. & Parales, J. (1988). Identification and expression of genes narL and narX of the nar (nitrate reductase) locus in Escherichia coli K-12. J Bacteriol 170, 1589-1597.
    • (1988) J Bacteriol , vol.170 , pp. 1589-1597
    • Stewart, V.1    Parales, J.2
  • 43
    • 0001943573 scopus 로고
    • Dual sensors and dual response regulators interact to control nitrate- and nitrite-responsive gene expression in Escherichia coli
    • Edited by J. A. Hoch & T. J. Silhavy. Washington, DC: American Society for Microbiology
    • Stewart, V. & Rabin, R. S. (1995). Dual sensors and dual response regulators interact to control nitrate- and nitrite-responsive gene expression in Escherichia coli. In Two-Component Signal Transduction, pp. 233-252. Edited by J. A. Hoch & T. J. Silhavy. Washington, DC: American Society for Microbiology.
    • (1995) Two-Component Signal Transduction , pp. 233-252
    • Stewart, V.1    Rabin, R.S.2
  • 44
    • 0141727575 scopus 로고    scopus 로고
    • Dual overlapping promoters control napF (periplasmic nitrate reductase) operon expression in Escherichia coli K-12
    • Stewart, V., Bledsoe, P. J. & Williams, S. B. (2003). Dual overlapping promoters control napF (periplasmic nitrate reductase) operon expression in Escherichia coli K-12. J Bacteriol 185, 5862-5870.
    • (2003) J Bacteriol , vol.185 , pp. 5862-5870
    • Stewart, V.1    Bledsoe, P.J.2    Williams, S.B.3
  • 45
    • 0035965123 scopus 로고    scopus 로고
    • Promoter-specific involvement of the FixJ receiver domain in transcriptional activation
    • Ton-Hoang, B., Salhi, M., Schumacher, J., Da Re, S. & Kahn, D. (2001). Promoter-specific involvement of the FixJ receiver domain in transcriptional activation. J Mol Biol 312, 583-589.
    • (2001) J Mol Biol , vol.312 , pp. 583-589
    • Ton-Hoang, B.1    Salhi, M.2    Schumacher, J.3    Da Re, S.4    Kahn, D.5
  • 47
    • 14844328070 scopus 로고    scopus 로고
    • Identification of amino acid residues of the Agrobacterium tumefaciens quorum-sensing regulator TraR that are critical for positive control of transcription
    • White, C. E. & Winans, S. C. (2005). Identification of amino acid residues of the Agrobacterium tumefaciens quorum-sensing regulator TraR that are critical for positive control of transcription. Mol Microbiol 55, 1473-1486.
    • (2005) Mol Microbiol , vol.55 , pp. 1473-1486
    • White, C.E.1    Winans, S.C.2
  • 48
    • 33947242434 scopus 로고    scopus 로고
    • The quorum-sensing transcription factor TraR decodes its DNA binding site by direct contacts with DNA bases and by detection of DNA flexibility
    • White, C. E. & Winans, S. C. (2007). The quorum-sensing transcription factor TraR decodes its DNA binding site by direct contacts with DNA bases and by detection of DNA flexibility. Mol Microbiol 64, 245-256.
    • (2007) Mol Microbiol , vol.64 , pp. 245-256
    • White, C.E.1    Winans, S.C.2
  • 49
    • 0036785605 scopus 로고    scopus 로고
    • Site-specific DNA cleavage of synthetic NarL sites by an engineered Escherichia coli NarL protein-1,10-phenanthroline cleaving agent
    • Xiao, G., Cole, D. L., Gunsalus, R. P., Sigman, D. S. & Chen, C. H. (2002). Site-specific DNA cleavage of synthetic NarL sites by an engineered Escherichia coli NarL protein-1,10-phenanthroline cleaving agent. Protein Sci 11, 2427-2436.
    • (2002) Protein Sci , vol.11 , pp. 2427-2436
    • Xiao, G.1    Cole, D.L.2    Gunsalus, R.P.3    Sigman, D.S.4    Chen, C.H.5
  • 50
    • 0026669278 scopus 로고
    • Catabolite gene activator protein (CAP) is not an "acidic activating region" transcription activator protein
    • Zhang, X., Zhou, Y., Ebright, Y. W. & Ebright, R. H. (1992). Catabolite gene activator protein (CAP) is not an "acidic activating region" transcription activator protein. J Biol Chem 267, 8136-8139.
    • (1992) J Biol Chem , vol.267 , pp. 8136-8139
    • Zhang, X.1    Zhou, Y.2    Ebright, Y.W.3    Ebright, R.H.4
  • 52
    • 0026442571 scopus 로고
    • Sporulation regulatory protein GerE from Bacillus subtilis binds to and can activate or repress transcription from promoters for mother-cell-specific genes
    • Zheng, L., Halberg, R., Roels, S., Ichikawa, H., Kroos, L. & Losick, R. (1992). Sporulation regulatory protein GerE from Bacillus subtilis binds to and can activate or repress transcription from promoters for mother-cell-specific genes. J Mol Biol 226, 1037-1050.
    • (1992) J Mol Biol , vol.226 , pp. 1037-1050
    • Zheng, L.1    Halberg, R.2    Roels, S.3    Ichikawa, H.4    Kroos, L.5    Losick, R.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.