Fidelity in archaeal information processing

Archaea

Volumn 2010, Issue , 2010, Pages

  De Koning, Bart ^a   Blombach, Fabian ^a   Brouns, Stan J J ^a   Van Der Oost, John ^a  

^a WAGENINGEN UNIVERSITY   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

ARCHAEAL PROTEIN; ARCHAEAL RNA; DNA BINDING PROTEIN; DNA DIRECTED DNA POLYMERASE;

ARCHAEBACTERIUM; DNA REPLICATION; GENETICS; METABOLISM; MOLECULAR EVOLUTION; REVIEW;

ARCHAEA; ARCHAEAL PROTEINS; DNA REPLICATION; DNA-BINDING PROTEINS; DNA-DIRECTED DNA POLYMERASE; EVOLUTION, MOLECULAR; RNA, ARCHAEAL;

ARCHAEA; BACTERIA (MICROORGANISMS); EUKARYOTA;

EID: 77957837282     PISSN: 14723646     EISSN: None     Source Type: Journal    
DOI: 10.1155/2010/960298     Document Type: Review

References (128)

1. Crick F., Central dogma of molecular biology Nature 1970 227 5258 561 563
2. Mattick J. S., Challenging the dogma: the hidden layer of non-protein-coding RNAs in complex organisms BioEssays 2003 25 10 930 939
3. Eigen M., Selforganization of matter and the evolution of biological macromolecules Die Naturwissenschaften 1971 58 10 465 523
4. Eigen M., Schuster P., The hypercycle. A principle of natural self organization. Part A: emergence of the hypercycle Naturwissenschaften 1977 64 11 541 565
5. Wolf Y. I., Koonin E. V., On the origin of the translation system and the genetic code in the RNA world by means of natural selection, exaptation, and subfunctionalization Biology Direct 2007 2, article 14
6. Lindahl T., Instability and decay of the primary structure of DNA Nature 1993 362 6422 709 715
7. Drake J. W., Charlesworth B., Charlesworth D., Crow J. F., Rates of spontaneous mutation Genetics 1998 148 4 1667 1686
8. De Visser J. A. G. M., Rozen D. E., Limits to adaptation in asexual populations Journal of Evolutionary Biology 2005 18 4 779 788
9. Furi V., Moya A., Sanjun R., The cost of replication fidelity in human immunodeficiency virus type 1 Proceedings of the Royal Society B 2007 274 1607 225 230
10. Loh E., Salk J. J., Loeb L. A., Optimization of DNA polymerase mutation rates during bacterial evolution Proceedings of the National Academy of Sciences of the United States of America 2010 107 3 1154 1159
11. Metzgar D., Wills C., Evolutionary changes in mutation rates and spectra and their influence on the adaptation of pathogens Microbes and Infection 2000 2 12 1513 1522
12. Brochier C., Forterre P., Gribaldo S., Archaeal phylogeny based on proteins of the transcription and translation machineries: tackling the Methanopyrus kandleri paradox Genome Biology 2004 5 3 R17
13. Thompson R. C., Karim A. M., The accuracy of protein biosynthesis is limited by its speed: high fidelity selection by ribosomes of aminoacyl-tRNA ternary complexes containing GTP[ S] Proceedings of the National Academy of Sciences of the United States of America 1982 79 16 4922 4926
14. Zaher H. S., Green R., Fidelity at the molecular level: lessons from protein synthesis Cell 2009 136 4 746 762
15. Kunkel T. A., Evolving views of DNA replication (In)fidelity Cold Spring Harbor Symposia on Quantitative Biology 2009 74 91 101
16. Loeb L. A., Kunkel T. A., Fidelity of DNA synthesis Annual Review of Biochemistry 1982 51 429 457
17. Drake J. W., Avoiding dangerous missense: thermophiles display especially low mutation rates PLoS Genetics 2009 5 6
18. She Q., Singh R. K., Confalonieri F., Zivanovic Y., Allard G., Awayez M. J., Chan-Weiher C. C.-Y., Clausen I. G., Curtis B. A., De Moors A., Erauso G., Fletcher C., Gordon P. M. K., Heikamp-de Jong I., Jeffries A. C., Kozera C. J., Medina N., Peng X., Thi-Ngoc H. P., Redder P., Schenk M. E., Theriault C., Tolstrup N., Charlebois R. L., Doolittle W. F., Duguet M., Gaasterland T., Garrett R. A., Ragan M. A., Sensen C. W., Van Der Oostg J., The complete genome of the crenarchaeon Sulfolobus solfataricus P2 Proceedings of the National Academy of Sciences of the United States of America 2001 98 14 7835 7840 (Pubitemid 32642647)
19. Tahirov T. H., Makarova K. S., Rogozin I. B., Pavlov Y. I., Koonin E. V., Evolution of DNA polymerases: an inactivated polymerase-exonuclease module in Pol and a chimeric origin of eukaryotic polymerases from two classes of archaeal ancestors Biology Direct 2009 4, article 11
20. Henneke G., Flament D., Hbscher U., Querellou J., Raffin J.-P., The hyperthermophilic euryarchaeota Pyrococcus abyssi likely requires the two DNA polymerases D and B for DNA replication Journal of Molecular Biology 2005 350 1 53 64
21. Fukui T., Yamauchi K., Muroya T., Akiyama M., Maki H., Sugino A., Waga S., Distinct roles of DNA polymerases delta and epsilon at the replication fork in Xenopus egg extracts Genes to Cells 2004 9 3 179 191
22. Sanders G. M., Dallmann H. G., McHenry C. S., Reconstitution of the B. subtilis replisome with 13 proteins including two distinct replicases Molecular Cell 2010 37 2 273 281
23. Lao-Sirieix S.-H., Bell S. D., The heterodimeric primase of the hyperthermophilic archaeon Sulfolobus solfataricus possesses DNA and RNA primase, polymerase and 3′ -terminal Nucleotidyl transferase activities Journal of Molecular Biology 2004 344 5 1251 1263
24. Liu L., Komori K., Ishino S., Bocquier A. A., Cann I. K. O., Kohda D., Ishino Y., The archaeal DNA primase: biochemical characterization of the p41-p46 complex from Pyrococcus furiosus The Journal of Biological Chemistry 2001 276 48 45484 45490
25. Barry E. R., Bell S. D., DNA replication in the archaea Microbiology and Molecular Biology Reviews 2006 70 4 876 887
26. Russell H. J., Richardson T. T., Emptage K., Connolly B. A., The 3′-5′ proofreading exonuclease of archaeal family-B DNA polymerase hinders the copying of template strand deaminated bases Nucleic Acids Research 2009 37 22 7603 7611
27. Broyde S., Wang L., Rechkoblit O., Geacintov N. E., Patel D. J., Lesion processing: high-fidelity versus lesion-bypass DNA polymerases Trends in Biochemical Sciences 2008 33 5 209 219
28. Watson J. D., Crick F. H. C., Genetical implications of the structure of deoxyribonucleic acid Nature 1953 171 4361 964 967
29. Petruska J., Sowers L. C., Goodman M. F., Comparison of nucleotide interactions in water, proteins, and vacuum: model for DNA polymerase fidelity Proceedings of the National Academy of Sciences of the United States of America 1986 83 6 1559 1562
30. Kunkel T. A., Bebenek K., DNA replication fidelity Annual Review of Biochemistry 2000 69 497 529
31. Jokela M., Eskelinen A., Pospiech H., Rouvinen J., Syvoja J. E., Characterization of the 3′ exonuclease subunit DP1 of Methanococcus jannaschii replicative DNA polymerase D Nucleic Acids Research 2004 32 8 2430 2440
32. Zhang L., Lou H., Guo L., Zhan Z., Duan Z., Guo X., Huang L., Accurate DNA synthesis by Sulfolobus solfataricus DNA polymerase B1 at high temperature Extremophiles 2009 14 1 107 117
33. Lin Z., Nei M., Ma H., The origins and early evolution of DNA mismatch repair genesmultiple horizontal gene transfers and co-evolution Nucleic Acids Research 2007 35 22 7591 7603
34. Busch C. R., DiRuggiero J., MutS and MutL are dispensable for maintenance of the genomic mutation rate in the halophilic archaeon Halobacterium salinarum NRC-1 PLoS ONE 2010 5 2
35. Vijayvargia R., Biswas I., MutS2 family protein from Pyrococcus furiosus Current Microbiology 2002 44 3 224 228
36. Au K. G., Welsh K., Modrich P., Initiation of methyl-directed mismatch repair The Journal of Biological Chemistry 1992 267 17 12142 12148
37. Grogan D. W., Stability and repair of DNA in hyperthermophilic archaea Current Issues in Molecular Biology 2004 6 2 137 144
38. Birkeland N.-K., nensen H., Knvelsrud I., Kristoffersen W., Bjrs M., Robb F. T., Klungland A., Bjelland S., Methylpurine DNA glycosylase of the hyperthermophilic archaeon Archaeoglobus fulgidus Biochemistry 2002 41 42 12697 12705
39. Kiyonari S., Tahara S., Uchimura M., Shirai T., Ishino S., Ishino Y., Studies on the base excision repair (BER) complex in Pyrococcus furiosus Biochemical Society Transactions 2009 37 1 79 82
40. Kiyonari S., Tahara S., Shirai T., Iwai S., Ishino S., Ishino Y., Biochemical properties and base excision repair complex formation of apurinic/apyrimidinic endonuclease from Pyrococcus furiosus Nucleic Acids Research 2009 37 19 6439 6453
41. Knvelsrud I., Ruoff P., nensen H., Klungland A., Bjelland S., Birkeland N.-K., Excision of uracil from DNA by the hyperthermophilic Afung protein is dependent on the opposite base and stimulated by heat-induced transition to a more open structure Mutation Research 2001 487 3-4 173 190
42. Sartori A. A., Schr P., Fitz-Gibbon S., Miller J. H., Jiricny J., Biochemical characterization of uracil processing activities in the hyperthermophilic archaeon Pyrobaculum aerophilum The Journal of Biological Chemistry 2001 276 32 29979 29986
43. Schmidt K. J., Beck K. E., Grogan D. W., UV stimulation of chromosomal marker exchange in Sulfolobus acidocaldarius: implications for DNA repair, conjugation and homologous recombination at extremely high temperatures Genetics 1999 152 4 1407 1415
44. Wood E. R., Ghan F., Grogan D. W., Genetic responses of the thermophilic archaeon Sulfolobus acidocaldarius to short-wavelength UV light Journal of Bacteriology 1997 179 18 5693 5698
45. Cramer P., Common structural features of nucleic acid polymerases BioEssays 2002 24 8 724 729
46. Blank A., Gallant J. A., Burgess R. R., Loeb L. A., An RNA polymerase mutant with reduced accuracy of chain elongation Biochemistry 1986 25 20 5920 5928
47. Rosenberger R. F., Foskett G., An estimate of the frequency of in vivo transcriptional errors at a nonsense codon in Escherichia coli Molecular and General Genetics 1981 183 3 561 563
48. de Mercoyrol L., Corda Y., Job C., Job D., Accuracy of wheat-germ RNA polymerase II. General enzymatic properties and effect of template conformational transition from right-handed B-DNA to left-handed Z-DNA European Journal of Biochemistry 1992 206 1 49 58
49. Landick R., Functional divergence in the growing family of RNA polymerases Structure 2009 17 3 323 325
50. Koonin E. V., Makarova K. S., Elkins J. G., Orthologs of the small RPB8 subunit of the eukaryotic RNA polymerases are conserved in hyperthermophilic Crenarchaeota and Korarchaeota Biology Direct 2007 2, article 38
51. Werner F., Structure and function of archaeal RNA polymerases Molecular Microbiology 2007 65 6 1395 1404
52. Korkhin Y., Unligil U. M., Littlefield O., Nelson P. J., Stuart D. I., Sigler P. B., Bell S. D., Abrescia N. G. A., Evolution of complex RNA polymerases: the complete archaeal RNA polymerase structure PLoS Biology 2009 7 5
53. Hirtreiter A., Grohmann D., Werner F., Molecular mechanisms of RNA polymerasethe F/E (RPB4/7) complex is required for high processivity in vitro Nucleic Acids Research 2009 38 2 585 596
54. Grnberg S., Reich C., Zeller M. E., Bartlett M. S., Thomm M., Rearrangement of the RNA polymerase subunit H and the lower jaw in archaeal elongation complexes Nucleic Acids Research 2009 38 6 1950 1963
55. Reich C., Zeller M., Milkereit P., Hausner W., Cramer P., Tschochner H., Thomm M., The archaeal RNA polymerase subunit P and the eukaryotic polymerase subunit Rpb12 are interchangeable in vivo and in vitro Molecular Microbiology 2009 71 4 989 1002
56. Blombach F., Makarova K. S., Marrero J., Siebers B., Koonin E. V., Oost J. V. D., Identification of an ortholog of the eukaryotic RNA polymerase III subunit RPC34 in Crenarchaeota and Thaumarchaeota suggests specialization of RNA polymerases for coding and non-coding RNAs in Archaea Biology Direct 2009 4, article 1745 39
57. Naji S., Grnberg S., Thomm M., The RPB7 orthologue E′ is required for transcriptional activity of a reconstituted archaeal core enzyme at low temperatures and stimulates open complex formation The Journal of Biological Chemistry 2007 282 15 11047 11057
58. Werner F., Weinzierl R. O. J., A recombinant RNA polymerase II-like enzyme capable of promoter-specific transcription Molecular Cell 2002 10 3 635 646
59. Thomm M., Reich C., Grnberg S., Naji S., Mutational studies of archaeal RNA polymerase and analysis of hybrid RNA polymerases Biochemical Society Transactions 2009 37 1 18 22
60. Sydow J. F., Cramer P., RNA polymerase fidelity and transcriptional proofreading Current Opinion in Structural Biology 2009 19 6 732 739
61. Lange U., Hausner W., Transcriptional fidelity and proofreading in Archaea and implications for the mechanism of TFS-induced RNA cleavage Molecular Microbiology 2004 52 4 1133 1143
62. Bouadloun F., Donner D., Kurland C. G., Codon-specific missense errors in vivo EMBO Journal 1983 2 8 1351 1356
63. Edelmann P., Gallant J., Mistranslation in E. coli Cell 1977 10 1 131 137
64. Londei P., Altamura S., Sanz J. L., Amils R., Aminoglycoside-induced mistranslation in thermophilic archaebacteria MGG Molecular General Genetics 1988 214 1 48 54
65. Novozhilov A. S., Koonin E. V., Exceptional error minimization in putative primordial genetic codes Biology Direct 2009 4, article 44
66. Czerwoniec A., Dunin-Horkawicz S., Purta E., Kaminska K. H., Kasprzak J. M., Bujnicki J. M., Grosjean H., Rother K., MODOMICS: a database of RNA modification pathways. 2008 update Nucleic Acids Research 2009 37 1 D118 D121
67. Helm M., Post-transcriptional nucleotide modification and alternative folding of RNA Nucleic Acids Research 2006 34 2 721 733
68. Grosjean H., de Crcy-Lagard V., Marck C., Deciphering synonymous codons in the three domains of life: co-evolution with specific tRNA modification enzymes FEBS Letters 2010 584 2 252 264
69. Sabina J., Sll D., The RNA-binding PUA domain of archaeal tRNA-guanine transglycosylase is not required for archaeosine formation The Journal of Biological Chemistry 2006 281 11 6993 7001
70. Levitt M., Detailed molecular model for transfer ribonucleic acid Nature 1969 224 5221 759 763
71. Ishitani R., Nureki O., Nameki N., Okada N., Nishimura S., Yokoyama S., Alternative tertiary structure of tRNA for recognition by a posttranscriptional modification enzyme Cell 2003 113 3 383 394
72. Oliva R., Tramontano A., Cavallo L., Mg 2 + binding and archaeosine modification stabilize the G15-C48 Levitt base pair in tRNAs RNA 2007 13 9 1427 1436
73. Eriani G., Delarue M., Poch O., Gangloff J., Moras D., Partition of tRNA synthetases into two classes based on mutually exclusive sets of sequence motifs Nature 1990 347 6289 203 206
74. Hausmann C. D., Ibba M., Aminoacyl-tRNA synthetase complexes: molecular multitasking revealed FEMS Microbiology Reviews 2008 32 4 705 721
75. Goldgur Y., Safro M., Aminoacyl-tRNA synthetases from Haloarcula marismortui: an evidence for a multienzyme complex in a procaryotic system Biochemistry and Molecular Biology International 1994 32 6 1075 1083
76. Prtorius-Ibba M., Hausmann C. D., Paras M., Rogers T. E., Ibba M., Functional association between three archaeal aminoacyl-tRNA synthetases The Journal of Biological Chemistry 2007 282 6 3680 3687
77. Ibba M., Sll D., Aminoacyl-tRNAs: setting the limits of the genetic code Genes and Development 2004 18 7 731 738
78. Francklyn C. S., DNA polymerases and aminoacyl-tRNA synthetases: shared mechanisms for ensuring the fidelity of gene expression Biochemistry 2008 47 45 11695 11703
79. Jakubowski H., Goldman E., Editing of errors in selection of amino acids for protein synthesis Microbiological Reviews 1992 56 3 412 429
80. Fersht A. R., Enzymic editing mechanisms and the genetic code Proceedings of the Royal Society of London 1981 212 1189 351 379
81. Korencic D., Ahel I., Schelert J., Sacher M., Ruan B., Stathopoulos C., Blum P., Ibba M., Sll D., A freestanding proofreading domain is required for protein synthesis quality control in Archaea Proceedings of the National Academy of Sciences of the United States of America 2004 101 28 10260 10265
82. Wong F.-C., Beuning P. J., Silvers C., Musier-Forsyth K., An isolated class II aminoacyl-tRNA synthetase insertion domain is functional in amino acid editing The Journal of Biological Chemistry 2003 278 52 52857 52864
83. Ahel I., Korencic D., Ibba M., Sll D., Trans-editing of mischarged tRNAs Proceedings of the National Academy of Sciences of the United States of America 2003 100 26 15422 15427
84. Oshikane H., Sheppard K., Fukai S., Nakamura Y., Ishitani R., Numata T., Sherrer R. L., Feng L., Schmitt E., Panvert M., Blanquet S., Mechulam Y., Sll D., Nureki O., Structural basis of RNA-dependent recruitment of glutamine to the genetic code Science 2006 312 5782 1950 1954
85. Sauerwald A., Zhu W., Major T. A., Roy H., Palioura S., Jahn D., Whitman W. B., Yates J. R. III, Ibba M., Sll D., RNA-dependent cysteine biosynthesis in archaea Science 2005 307 5717 1969 1972
86. Stock T., Rother M., Selenoproteins in Archaea and Gram-positive bacteria Biochimica et Biophysica Acta 2009 1790 11 1520 1532
87. Lecompte O., Ripp R., Thierry J.-C., Moras D., Poch O., Comparative analysis of ribosomal proteins in complete genomes: an example of reductive evolution at the domain scale Nucleic Acids Research 2002 30 24 5382 5390
88. Benelli D., Maone E., Londei P., Two different mechanisms for ribosome/mRNA interaction in archaeal translation initiation Molecular Microbiology 2003 50 2 635 643
89. Slupska M. M., King A. G., Fitz-Gibbon S., Besemer J., Borodovsky M., Miller J. H., Leaderless transcripts of the crenarchaeal hyperthermophile Pyrobaculum aerophilum Journal of Molecular Biology 2001 309 2 347 360
90. Brenneis M., Hering O., Lange C., Soppa J., Experimental characterization of Cis-acting elements important for translation and transcription in halophilic archaea. PLoS Genetics 2007 3 12 e229
91. Kozak M., Pushing the limits of the scanning mechanism for initiation of translation Gene 2002 299 1-2 1 34
92. Lpez-Lastra M., Rivas A., Barra M. I., Protein synthesis in eukaryotes: the growing biological relevance of cap-independent translation initiation Biological Research 2005 38 2-3 121 146
93. Benelli D., Londei P., Begin at the beginning: evolution of translational initiation Research in Microbiology 2009 160 7 493 501
94. Hering O., Brenneis M., Beer J., Suess B., Soppa J., A novel mechanism for translation initiation operates in haloarchaea Molecular Microbiology 2009 71 6 1451 1463
95. Wurtzel O., Sapra R., Chen F., Zhu Y., Simmons B. A., Sorek R., A single-base resolution map of an archaeal transcriptome Genome Research 2010 20 1 133 141
96. Hopefield J. J., Kinetic proofreading: a new mechanism for reducing errors in biosynthetic processes requiring high specificity Proceedings of the National Academy of Sciences of the United States of America 1974 71 10 4135 4139
97. Ninio J., Kinetic amplification of enzyme discrimination Biochimie 1975 57 5 587 595
98. Rodnina M. V., Gromadski K. B., Kothe U., Wieden H.-J., Recognition and selection of tRNA in translation FEBS Letters 2005 579 4 938 942
99. Thompson R. C., Stone P. J., Proofreading of the codon anticodon interaction on ribosomes Proceedings of the National Academy of Sciences of the United States of America 1977 74 1 198 202
100. Zaher H. S., Green R., Quality control by the ribosome following peptide bond formation Nature 2009 457 7226 161 166
101. Alkalaeva E., Eliseev B., Ambrogelly A., Vlasov P., Kondrashov F. A., Gundllapalli S., Frolova L., Sll D., Kisselev L., Translation termination in pyrrolysine-utilizing archaea FEBS Letters 2009 583 21 3455 3460
102. Lee M. M., Jiang R., Jain R., Larue R. C., Krzycki J., Chan M. K., Structure of Desulfitobacterium hafniense PylSc, a pyrrolysyl-tRNA synthetase Biochemical and Biophysical Research Communications 2008 374 3 470 474
103. Thobald-Dietrich A., Frugier M., Gieg R., Rudinger-Thirion J., Atypical archaeal tRNA pyrrolysine transcript behaves towards EF-Tu as a typical elongator tRNA Nucleic Acids Research 2004 32 3 1091 1096
104. Ito K., Frolova L., Seit-Nebi A., Karamyshev A., Kisselev L., Nakamura Y., Omnipotent decoding potential resides in eukaryotic translation termination factor eRF1 of variant-code organisms and is modulated by the interactions of amino acid sequences within domain 1 Proceedings of the National Academy of Sciences of the United States of America 2002 99 13 8494 8499
105. Kervestin S., Frolova L., Kisselev L., Jean-Jean O., Stop codon recognition in ciliates: euplotes release factor does not respond to reassigned UGA codon EMBO Reports 2001 2 8 680 684
106. Stock T., Selzer M., Rother M., In vivo requirement of selenophosphate for selenoprotein synthesis in archaea Molecular Microbiology 2010 75 1 149 160
107. Leibundgut M., Frick C., Thanbichler M., Bck A., Ban N., Selenocysteine tRNA-specific elongation factor SelB is a structural chimaera of elongation and initiation factors EMBO Journal 2005 24 1 11 22
108. Atkinson G. C., Baldauf S. L., Hauryliuk V., Evolution of nonstop, no-go and nonsense-mediated mRNA decay and their termination factor-derived components BMC Evolutionary Biology 2008 8 1, article 290
109. Doma M. K., Parker R., Endonucleolytic cleavage of eukaryotic mRNAs with stalls in translation elongation Nature 2006 440 7083 561 564
110. Graille M., Chaillet M., Van Tilbeurgh H., Structure of Yeast Dom34: a protein related to translation termination factor Erf1 and involved in No-Go decay The Journal of Biological Chemistry 2008 283 11 7145 7154
111. Moore S. D., Sauer R. T., The tmRNA system for translational surveillance and ribosome rescue Annual Review of Biochemistry 2007 76 101 124
112. Benaroudj N., Zwickl P., Seemller E., Baumeister W., Goldberg A. L., ATP hydrolysis by the proteasome regulatory complex PAN serves multiple functions in protein degradation Molecular Cell 2003 11 1 69 78
113. Hartung S., Hopfner K.-P., Lessons from structural and biochemical studies on the archaeal exosome Biochemical Society Transactions 2009 37 1 83 87
114. Lorentzen E., Basquin J., Conti E., Structural organization of the RNA-degrading exosome Current Opinion in Structural Biology 2008 18 6 709 713
115. Slomovic S., Portnoy V., Yehudai-Resheff S., Bronshtein E., Schuster G., Polynucleotide phosphorylase and the archaeal exosome as poly(A)-polymerases Biochimica et Biophysica Acta 2008 1779 4 247 255
116. Celesnik H., Deana A., Belasco J. G., Initiation of RNA decay in Escherichia coli by 5′ pyrophosphate removal Molecular Cell 2007 27 1 79 90
117. Portnoy V., Evguenieva-Hackenberg E., Klein F., Walter P., Lorentzen E., Klug G., Schuster G., RNA polyadenylation in Archaea: not observed in Haloferax while the exosome polynucleotidylates RNA in Sulfolobus EMBO Reports 2005 6 12 1188 1193
118. Portnoy V., Schuster G., RNA polyadenylation and degradation in different Archaea; roles of the exosome and RNase R Nucleic Acids Research 2006 34 20 5923 5931
119. Slomovic S., Laufer D., Geiger D., Schuster G., Polyadenylation of ribosomal RNA in human cells Nucleic Acids Research 2006 34 10 2966 2975
120. Newbury S. F., Control of mRNA stability in eukaryotes Biochemical Society Transactions 2006 34 1 30 34
121. Hasenhrl D., Lombo T., Kaberdin V., Londei P., Blsi U., Translation initiation factor a/eIF2(- ) counteracts 5′ to 3′ mRNA decay in the archaeon Sulfolobus solfataricus Proceedings of the National Academy of Sciences of the United States of America 2008 105 6 2146 2150
122. French S. L., Santangelo T. J., Beyer A. L., Reeve J. N., Transcription and translation are coupled in Archaea Molecular Biology and Evolution 2007 24 4 893 895
123. Humbard M. A., Zhou G., Maupin-Furlow J. A., The N-terminal penultimate residue of 20S proteasome 1 influences its N acetylation and protein levels as well as growth rate and stress responses of Haloferax volcanii Journal of Bacteriology 2009 191 12 3794 3803
124. Maupin-Furlow J. A., Humbard M. A., Kirkland P. A., Li W., Reuter C. J., Wright A. J., Zhou G., Proteasomes from structure to function: perspectives from Archaea Current Topics in Developmental Biology 2006 75 125 169
125. Hochstrasser M., Origin and function of ubiquitin-like proteins Nature 2009 458 7237 422 429
126. Kubota H., Quality control against misfolded proteins in the cytosol: a network for cell survival Journal of Biochemistry 2009 146 5 609 616
127. Hirsch C., Gauss R., Horn S. C., Neuber O., Sommer T., The ubiquitylation machinery of the endoplasmic reticulum Nature 2009 458 7237 453 460
128. Humbard M. A., Miranda H. V., Lim J.-M., Krause D. J., Pritz J. R., Zhou G., Chen S., Wells L., Maupin-Furlow J. A., Ubiquitin-like small archaeal modifier proteins (SAMPs) in Haloferax volcanii Nature 2010 463 7277 54 60