-
1
-
-
0037439231
-
Termination of translation: interplay of mRNA, rRNAs and release factors?
-
Kisselev L., Ehrenberg M., and Frolova L. Termination of translation: interplay of mRNA, rRNAs and release factors?. EMBO J. 22 (2003) 175-182
-
(2003)
EMBO J.
, vol.22
, pp. 175-182
-
-
Kisselev, L.1
Ehrenberg, M.2
Frolova, L.3
-
2
-
-
0037310005
-
Making sense of mimic in translation termination
-
Nakamura Y., and Ito K. Making sense of mimic in translation termination. Trends Biochem. Sci. 28 (2003) 99-105
-
(2003)
Trends Biochem. Sci.
, vol.28
, pp. 99-105
-
-
Nakamura, Y.1
Ito, K.2
-
3
-
-
2542418539
-
Molecular mimicry in the decoding of translational stop signals
-
Poole E.S., Askarian-Amiri M.E., Major L.L., McCaughan K.K., Scarlet D.J., Wilson D.N., and Tate W.P. Molecular mimicry in the decoding of translational stop signals. Prog. Nucleic Acids Res. Mol. Biol. 74 (2003) 83-121
-
(2003)
Prog. Nucleic Acids Res. Mol. Biol.
, vol.74
, pp. 83-121
-
-
Poole, E.S.1
Askarian-Amiri, M.E.2
Major, L.L.3
McCaughan, K.K.4
Scarlet, D.J.5
Wilson, D.N.6
Tate, W.P.7
-
4
-
-
0034725103
-
Translation termination factor aRF1 from the archaeon Methanococcus jannaschii is active with eukaryotic ribosomes
-
Dontsova M., Frolova L., Vassilieva J., Piendl W., Kisselev L., and Garber M. Translation termination factor aRF1 from the archaeon Methanococcus jannaschii is active with eukaryotic ribosomes. FEBS Lett. 472 (2000) 213-216
-
(2000)
FEBS Lett.
, vol.472
, pp. 213-216
-
-
Dontsova, M.1
Frolova, L.2
Vassilieva, J.3
Piendl, W.4
Kisselev, L.5
Garber, M.6
-
5
-
-
20144384309
-
Pyrrolysine and selenocysteine use dissimilar decoding strategies
-
Zhang Y., Baranov P.V., Atkins J.F., and Gladyshev V.N. Pyrrolysine and selenocysteine use dissimilar decoding strategies. J. Biol. Chem. 280 (2005) 20740-20751
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 20740-20751
-
-
Zhang, Y.1
Baranov, P.V.2
Atkins, J.F.3
Gladyshev, V.N.4
-
6
-
-
27844438536
-
The direct genetic encoding of pyrrolysine
-
Krzycki J.A. The direct genetic encoding of pyrrolysine. Curr. Opin. Microbiol. 8 (2005) 706-712
-
(2005)
Curr. Opin. Microbiol.
, vol.8
, pp. 706-712
-
-
Krzycki, J.A.1
-
7
-
-
0037165964
-
A new UAG-encoded residue in the structure of a methanogen methyltransferase
-
Hao B., Gong W., Ferguson T.K., James C.M., Krzycki J.A., and Chan M.K. A new UAG-encoded residue in the structure of a methanogen methyltransferase. Science 296 (2002) 1462-1466
-
(2002)
Science
, vol.296
, pp. 1462-1466
-
-
Hao, B.1
Gong, W.2
Ferguson, T.K.3
James, C.M.4
Krzycki, J.A.5
Chan, M.K.6
-
8
-
-
0035988323
-
The genome of Methanosarcina mazei: evidence for lateral gene transfer between Bacteria and Archaea
-
Deppenmeier U., et al. The genome of Methanosarcina mazei: evidence for lateral gene transfer between Bacteria and Archaea. J. Mol. Microbiol. Biotechnol. 4 (2002) 453-461
-
(2002)
J. Mol. Microbiol. Biotechnol.
, vol.4
, pp. 453-461
-
-
Deppenmeier, U.1
-
9
-
-
34548574926
-
High content of proteins containing 21st and 22nd amino acids, selenocysteine and pyrrolysine, in a symbiotic deltaproteobacterium of gutless worm Olavius algarvensis
-
Zhang Y., and Gladyshev V.N. High content of proteins containing 21st and 22nd amino acids, selenocysteine and pyrrolysine, in a symbiotic deltaproteobacterium of gutless worm Olavius algarvensis. Nucleic Acids Res. 35 (2007) 4952-4963
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 4952-4963
-
-
Zhang, Y.1
Gladyshev, V.N.2
-
10
-
-
0037166006
-
Pyrrolysine encoded by UAG in Archaea: charging of a UAG-decoding specialized tRNA
-
Srinivasan G., James C.M., and Krzycki J.A. Pyrrolysine encoded by UAG in Archaea: charging of a UAG-decoding specialized tRNA. Science 296 (2002) 1459-1462
-
(2002)
Science
, vol.296
, pp. 1459-1462
-
-
Srinivasan, G.1
James, C.M.2
Krzycki, J.A.3
-
11
-
-
34250793331
-
The amino-terminal domain of pyrrolysyl-tRNA synthetase is dispensable in vitro but required for in vivo activity
-
Herring S., Ambrogelly A., Gundllapalli S., O'Donoghue P., Polycarpo C.R., and Soll D. The amino-terminal domain of pyrrolysyl-tRNA synthetase is dispensable in vitro but required for in vivo activity. FEBS Lett. 581 (2007) 3197-3203
-
(2007)
FEBS Lett.
, vol.581
, pp. 3197-3203
-
-
Herring, S.1
Ambrogelly, A.2
Gundllapalli, S.3
O'Donoghue, P.4
Polycarpo, C.R.5
Soll, D.6
-
12
-
-
4344643959
-
An aminoacyl-tRNA synthetase that specifically activates pyrrolysine
-
Polycarpo C., Ambrogelly A., Berube A., Winbush S.M., McCloskey J.A., Crain P.F., Wood J.L., and Soll D. An aminoacyl-tRNA synthetase that specifically activates pyrrolysine. Proc. Natl. Acad. Sci. USA 101 (2004) 12450-12454
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 12450-12454
-
-
Polycarpo, C.1
Ambrogelly, A.2
Berube, A.3
Winbush, S.M.4
McCloskey, J.A.5
Crain, P.F.6
Wood, J.L.7
Soll, D.8
-
13
-
-
4644312237
-
CUA with pyrrolysine in vitro and in vivo
-
CUA with pyrrolysine in vitro and in vivo. Nature 431 (2004) 333-335
-
(2004)
Nature
, vol.431
, pp. 333-335
-
-
Blight, S.K.1
-
14
-
-
4344682733
-
Selenocysteine
-
Francklyn C.S., Ibba M., and Cusack S. (Eds), Springer, Georgetown, TX
-
Bock A., Thanbichler M., Rother M., and Resch A. Selenocysteine. In: Francklyn C.S., Ibba M., and Cusack S. (Eds). Aminoacyl-tRNA Synthetases (2005), Springer, Georgetown, TX 320-327
-
(2005)
Aminoacyl-tRNA Synthetases
, pp. 320-327
-
-
Bock, A.1
Thanbichler, M.2
Rother, M.3
Resch, A.4
-
15
-
-
33750989874
-
Selenoprotein synthesis: UGA does not end the story
-
Allmang C., and Krol A. Selenoprotein synthesis: UGA does not end the story. Biochimie 88 (2006) 1561-1571
-
(2006)
Biochimie
, vol.88
, pp. 1561-1571
-
-
Allmang, C.1
Krol, A.2
-
16
-
-
45549108749
-
Eukaryotic selenoprotein synthesis: mechanistic insight incorporating new factors and new functions for old factors
-
Squires J.E., and Berry M.J. Eukaryotic selenoprotein synthesis: mechanistic insight incorporating new factors and new functions for old factors. IUBMB Life 60 (2008) 232-235
-
(2008)
IUBMB Life
, vol.60
, pp. 232-235
-
-
Squires, J.E.1
Berry, M.J.2
-
17
-
-
62149114530
-
How an obscure archaeal gene inspired the discovery of selenocysteine biosynthesis in humans
-
Su D., Hohn M.J., Palioura S., Sherrer R.L., Yuan J., Soll D., and O'Donoghue P. How an obscure archaeal gene inspired the discovery of selenocysteine biosynthesis in humans. IUBMB Life 61 (2009) 35-39
-
(2009)
IUBMB Life
, vol.61
, pp. 35-39
-
-
Su, D.1
Hohn, M.J.2
Palioura, S.3
Sherrer, R.L.4
Yuan, J.5
Soll, D.6
O'Donoghue, P.7
-
18
-
-
0842267214
-
Reprogrammed genetic decoding in cellular gene expression
-
Namy O., Rousset J.P., Napthine S., and Brierley I. Reprogrammed genetic decoding in cellular gene expression. Mol. Cell 13 (2004) 157-168
-
(2004)
Mol. Cell
, vol.13
, pp. 157-168
-
-
Namy, O.1
Rousset, J.P.2
Napthine, S.3
Brierley, I.4
-
19
-
-
24744437960
-
Evidence for the existence in mRNAs of a hairpin element responsible for ribosome dependent pyrrolysine insertion into proteins
-
Théobald-Dietrich A., Giegé R., and Rudinger-Thirion J. Evidence for the existence in mRNAs of a hairpin element responsible for ribosome dependent pyrrolysine insertion into proteins. Biochimie 87 (2005) 813-817
-
(2005)
Biochimie
, vol.87
, pp. 813-817
-
-
Théobald-Dietrich, A.1
Giegé, R.2
Rudinger-Thirion, J.3
-
20
-
-
33845691072
-
In vivo contextual requirements for UAG translation as pyrrolysine
-
Longstaff D.G., Blight S.K., Zhang L., Green-Church K.B., and Krzycki J.A. In vivo contextual requirements for UAG translation as pyrrolysine. Mol. Microbiol. 63 (2007) 229-241
-
(2007)
Mol. Microbiol.
, vol.63
, pp. 229-241
-
-
Longstaff, D.G.1
Blight, S.K.2
Zhang, L.3
Green-Church, K.B.4
Krzycki, J.A.5
-
21
-
-
35548939370
-
Adding pyrrolysine to the Escherichia coli genetic code
-
Namy O., Zhou Y., Gundllapalli S., Polycarpo C.R., Denise A., Rousset J.P., Soll D., and Ambrogelly A. Adding pyrrolysine to the Escherichia coli genetic code. FEBS Lett. 581 (2007) 5282-5288
-
(2007)
FEBS Lett.
, vol.581
, pp. 5282-5288
-
-
Namy, O.1
Zhou, Y.2
Gundllapalli, S.3
Polycarpo, C.R.4
Denise, A.5
Rousset, J.P.6
Soll, D.7
Ambrogelly, A.8
-
22
-
-
1842743704
-
Atypical archaeal tRNA pyrrolysine transcript behaves towards EF-Tu as a typical elongator tRNA
-
Théobald-Dietrich A., Frugier M., Giegé R., and Rudinger-Thirion J. Atypical archaeal tRNA pyrrolysine transcript behaves towards EF-Tu as a typical elongator tRNA. Nucleic Acids Res. 32 (2004) 1091-1096
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1091-1096
-
-
Théobald-Dietrich, A.1
Frugier, M.2
Giegé, R.3
Rudinger-Thirion, J.4
-
23
-
-
0034603210
-
The crystal structure of human eukaryotic release factor - eRF1-mechanism of stop codon recognition and peptidyl-tRNA hydrolysis
-
Song H., Mugnier P., Das A.K., Webb H.M., Evans D.R., Tuite M.F., Hemmings B.A., and Barford D. The crystal structure of human eukaryotic release factor - eRF1-mechanism of stop codon recognition and peptidyl-tRNA hydrolysis. Cell 100 (2000) 311-321
-
(2000)
Cell
, vol.100
, pp. 311-321
-
-
Song, H.1
Mugnier, P.2
Das, A.K.3
Webb, H.M.4
Evans, D.R.5
Tuite, M.F.6
Hemmings, B.A.7
Barford, D.8
-
24
-
-
34547414394
-
Different modes of stop codon restriction by the Stylonychia and Paramecium eRF1 translation termination factors
-
Lekomtsev S., Kolosov P., Bidou L., Frolova L., Rousset J.P., and Kisselev L. Different modes of stop codon restriction by the Stylonychia and Paramecium eRF1 translation termination factors. Proc. Natl. Acad. Sci. USA 104 (2007) 10824-10829
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 10824-10829
-
-
Lekomtsev, S.1
Kolosov, P.2
Bidou, L.3
Frolova, L.4
Rousset, J.P.5
Kisselev, L.6
-
25
-
-
0035476654
-
Class-1 translation termination factors: invariant GGQ minidomain is essential for release activity and ribosome binding but not for stop codon recognition
-
Seit-Nebi A., Frolova L., Justesen J., and Kisselev L. Class-1 translation termination factors: invariant GGQ minidomain is essential for release activity and ribosome binding but not for stop codon recognition. Nucleic Acids Res. 29 (2001) 3982-3987
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 3982-3987
-
-
Seit-Nebi, A.1
Frolova, L.2
Justesen, J.3
Kisselev, L.4
-
26
-
-
33744993160
-
In vitro reconstitution of eukaryotic translation reveals cooperativity between release factors eRF1 and eRF3
-
Alkalaeva E.Z., Pisarev A.V., Frolova L.Y., Kisselev L.L., and Pestova T.V. In vitro reconstitution of eukaryotic translation reveals cooperativity between release factors eRF1 and eRF3. Cell 125 (2006) 1125-1136
-
(2006)
Cell
, vol.125
, pp. 1125-1136
-
-
Alkalaeva, E.Z.1
Pisarev, A.V.2
Frolova, L.Y.3
Kisselev, L.L.4
Pestova, T.V.5
-
27
-
-
34547781750
-
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
-
Tamura K., Dudley J., Nei M., and Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24 (2007) 1596-1599
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
28
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
Ronquist F., and Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19 (2003) 1572-1574
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
29
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar R.C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32 (2004) 1792-1797
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
30
-
-
0033827056
-
Terminating eukaryote translation: domain 1 of release factor eRF1 functions in stop codon recognition
-
Bertram G., Bell H.A., Ritchie D.W., Fullerton G., and Stansfield I. Terminating eukaryote translation: domain 1 of release factor eRF1 functions in stop codon recognition. RNA 6 (2000) 1236-1247
-
(2000)
RNA
, vol.6
, pp. 1236-1247
-
-
Bertram, G.1
Bell, H.A.2
Ritchie, D.W.3
Fullerton, G.4
Stansfield, I.5
-
31
-
-
0036216442
-
Highly conserved NIKS tetrapeptide is functionally essential in eukaryotic translation termination factor eRF1
-
Frolova L., Seit-Nebi A., and Kisselev L. Highly conserved NIKS tetrapeptide is functionally essential in eukaryotic translation termination factor eRF1. RNA 8 (2002) 129-136
-
(2002)
RNA
, vol.8
, pp. 129-136
-
-
Frolova, L.1
Seit-Nebi, A.2
Kisselev, L.3
-
32
-
-
0036747332
-
Conversion of omnipotent translation termination factor eRF1 into ciliate-like UGA-only unipotent eRF1
-
Seit-Nebi A., Frolova L., and Kisselev L. Conversion of omnipotent translation termination factor eRF1 into ciliate-like UGA-only unipotent eRF1. EMBO Rep. 3 (2002) 881-886
-
(2002)
EMBO Rep.
, vol.3
, pp. 881-886
-
-
Seit-Nebi, A.1
Frolova, L.2
Kisselev, L.3
-
33
-
-
0345146926
-
Stop codon selection in eukaryotic translation termination: comparison of the discriminating potential between human and ciliate eRF1s
-
Chavatte L., Kervestin S., Favre A., and Lean-Jean O. Stop codon selection in eukaryotic translation termination: comparison of the discriminating potential between human and ciliate eRF1s. EMBO J. 22 (2003) 1644-1653
-
(2003)
EMBO J.
, vol.22
, pp. 1644-1653
-
-
Chavatte, L.1
Kervestin, S.2
Favre, A.3
Lean-Jean, O.4
-
34
-
-
28544432926
-
Invariant amino acids essential for decoding function of polypeptide release factor eRF1
-
Kolosov P., Frolova L., Seit-Nebi A., Dubovaya V., Kononenko A., Oparina N., Justesen J., Efimov A., and Kisselev L. Invariant amino acids essential for decoding function of polypeptide release factor eRF1. Nucleic Acids Res. 33 (2005) 6418-6425
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 6418-6425
-
-
Kolosov, P.1
Frolova, L.2
Seit-Nebi, A.3
Dubovaya, V.4
Kononenko, A.5
Oparina, N.6
Justesen, J.7
Efimov, A.8
Kisselev, L.9
-
35
-
-
0030660581
-
A genomic perspective on protein families
-
Tatusov R.L., Koonin E.V., and Lipman D.J. A genomic perspective on protein families. Science 278 (1997) 631-637
-
(1997)
Science
, vol.278
, pp. 631-637
-
-
Tatusov, R.L.1
Koonin, E.V.2
Lipman, D.J.3
-
37
-
-
0036330799
-
Functional annotation of class I lysyl-tRNA synthetase phylogeny indicates a limited role for gene transfer
-
Ambrogelly A., Korencic D., and Ibba M. Functional annotation of class I lysyl-tRNA synthetase phylogeny indicates a limited role for gene transfer. J. Bacteriol. 184 (2002) 4594-4600
-
(2002)
J. Bacteriol.
, vol.184
, pp. 4594-4600
-
-
Ambrogelly, A.1
Korencic, D.2
Ibba, M.3
-
38
-
-
0037173091
-
Omnipotent decoding potential resides in eukaryotic translation termination factor eRF1 of variant-code organisms and is modulated by the interactions of amino acid sequences within domain 1
-
Ito K., Frolova L., Seit-Nebi A., Karamyshev A., Kisselev L., and Nakamura Y. Omnipotent decoding potential resides in eukaryotic translation termination factor eRF1 of variant-code organisms and is modulated by the interactions of amino acid sequences within domain 1. Proc. Natl. Acad. Sci. USA 25 (2002) 8494-8499
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.25
, pp. 8494-8499
-
-
Ito, K.1
Frolova, L.2
Seit-Nebi, A.3
Karamyshev, A.4
Kisselev, L.5
Nakamura, Y.6
-
39
-
-
0034860257
-
Stop codon recognition in ciliates: Euplotes release factor does not respond to reassigned UGA codon
-
Kervestin S., Frolova L., Kisselev L., and Jean-Jean O. Stop codon recognition in ciliates: Euplotes release factor does not respond to reassigned UGA codon. EMBO Rep. 2 (2001) 680-684
-
(2001)
EMBO Rep.
, vol.2
, pp. 680-684
-
-
Kervestin, S.1
Frolova, L.2
Kisselev, L.3
Jean-Jean, O.4
-
40
-
-
0023770831
-
Transfer ribonucleic acid-mediated suppression of termination codons in Escherichia coli
-
Eggertsson G., and Soll D. Transfer ribonucleic acid-mediated suppression of termination codons in Escherichia coli. Microbiol. Rev. 52 (1988) 354-374
-
(1988)
Microbiol. Rev.
, vol.52
, pp. 354-374
-
-
Eggertsson, G.1
Soll, D.2
|