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Volumn 274, Issue 1607, 2007, Pages 225-230

The cost of replication fidelity in human immunodeficiency virus type 1

Author keywords

Evolution; Mutation rate; Trade off

Indexed keywords

RNA DIRECTED DNA POLYMERASE; VIRUS DNA;

EID: 39049181029     PISSN: 09628452     EISSN: 14712970     Source Type: Journal    
DOI: 10.1098/rspb.2006.3732     Document Type: Article
Times cited : (32)

References (39)
  • 1
    • 0030581311 scopus 로고    scopus 로고
    • Mutational studies of human immunodeficiency virus type 1 reverse transcriptase: The involvement of residues 183 and 184 in the fidelity of DNA synthesis
    • doi:10.1016/0014-5793(96)00747-8
    • Bakhanashvili, M., Avidan, O. & Hizi, A. 1996 Mutational studies of human immunodeficiency virus type 1 reverse transcriptase: the involvement of residues 183 and 184 in the fidelity of DNA synthesis. FEBS Lett. 391, 257-262. (doi:10.1016/0014-5793(96)00747-8)
    • (1996) FEBS Lett , vol.391 , pp. 257-262
    • Bakhanashvili, M.1    Avidan, O.2    Hizi, A.3
  • 2
    • 17144418899 scopus 로고    scopus 로고
    • Nucleotide specificity of HIV-1 reverse transcriptases with amino acid substitutions affecting Ala-114
    • doi:10.1042/ BJ20041056
    • Cases-González, C. E. & Menendez-Arias, L. 2005 Nucleotide specificity of HIV-1 reverse transcriptases with amino acid substitutions affecting Ala-114. Biochem. J. 387, 221-229. (doi:10.1042/ BJ20041056)
    • (2005) Biochem. J , vol.387 , pp. 221-229
    • Cases-González, C.E.1    Menendez-Arias, L.2
  • 3
    • 0034733564 scopus 로고    scopus 로고
    • Coupling ribose selection to fidelity of DNA synthesis. The role of Tyr-115 of human immunodeficiency virus type 1 reverse transcriptase
    • doi:10.1074/jbc.M910361199
    • Cases-González, C. E., Gutiérrez-Rivas, M. & Menéndez-Arias, L. 2000 Coupling ribose selection to fidelity of DNA synthesis. The role of Tyr-115 of human immunodeficiency virus type 1 reverse transcriptase. J. Biol. Chem. 275, 19 759-19 767. (doi:10.1074/jbc.M910361199)
    • (2000) J. Biol. Chem , vol.275
    • Cases-González, C.E.1    Gutiérrez-Rivas, M.2    Menéndez-Arias, L.3
  • 4
    • 0032494160 scopus 로고    scopus 로고
    • Evolutionarily stable mutation rates
    • doi:10.1006/jtbi.1998.0752
    • Dawson, K. J. 1998 Evolutionarily stable mutation rates. J. Theor. Biol. 194, 143-157. (doi:10.1006/jtbi.1998.0752)
    • (1998) J. Theor. Biol , vol.194 , pp. 143-157
    • Dawson, K.J.1
  • 5
    • 19944379446 scopus 로고    scopus 로고
    • Macrophage tropism of HIV-1 depends on efficient cellular dNTP utilization by reverse transcriptase
    • doi:10.1074/jbc.M408573200
    • Diamond, T. L. et al. 2004 Macrophage tropism of HIV-1 depends on efficient cellular dNTP utilization by reverse transcriptase. J. Biol. Chem. 279, 51 545-51 553. (doi:10.1074/jbc.M408573200)
    • (2004) J. Biol. Chem , vol.279
    • Diamond, T.L.1
  • 6
    • 0036132387 scopus 로고    scopus 로고
    • Quasispecies theory in virology
    • doi:10.1128/JVI.76.1.463-465.2002
    • Domingo, E. 2002 Quasispecies theory in virology. J. Virol. 76, 463-465. (doi:10.1128/JVI.76.1.463-465.2002)
    • (2002) J. Virol , vol.76 , pp. 463-465
    • Domingo, E.1
  • 7
    • 0030747157 scopus 로고    scopus 로고
    • RNA virus mutations and fitness for survival
    • doi:10.1146/ annurev.micro.51.1.151
    • Domingo, E. & Holland, J. J. 1997 RNA virus mutations and fitness for survival. Annu. Rev. Microbiol. 51, 151-178. (doi:10.1146/ annurev.micro.51.1.151)
    • (1997) Annu. Rev. Microbiol , vol.51 , pp. 151-178
    • Domingo, E.1    Holland, J.J.2
  • 8
    • 0033598717 scopus 로고    scopus 로고
    • Mutation rates among RNA viruses
    • doi:10.1073/pnas.96. 24.13910
    • Drake, J. W. & Holland, J. J. 1999 Mutation rates among RNA viruses. Proc. Natl Acad. Sci. USA 96, 13 910-13 913. (doi:10.1073/pnas.96. 24.13910)
    • (1999) Proc. Natl Acad. Sci. USA , vol.96
    • Drake, J.W.1    Holland, J.J.2
  • 10
    • 22544478419 scopus 로고    scopus 로고
    • The cost of replication fidelity in an RNA virus
    • doi:10.1073/pnas.0501062102
    • Furió, V., Moya, A. & Sanjuán, R. 2005 The cost of replication fidelity in an RNA virus. Proc. Natl Acad. Sci. USA 102, 10 233-10 237. (doi:10.1073/pnas.0501062102)
    • (2005) Proc. Natl Acad. Sci. USA , vol.102
    • Furió, V.1    Moya, A.2    Sanjuán, R.3
  • 11
    • 0035945259 scopus 로고    scopus 로고
    • A mutation in the primer grip region of HIV-1 reverse transcriptase that confers reduced fidelity of DNA synthesis
    • doi:10.1093/nar/29.24.4963
    • Gutiérrez-Rivas, M. & Menéndez-Arias, L. 2001 A mutation in the primer grip region of HIV-1 reverse transcriptase that confers reduced fidelity of DNA synthesis. Nucleic Acids Res. 29, 4963-4972. (doi:10.1093/nar/29.24.4963)
    • (2001) Nucleic Acids Res , vol.29 , pp. 4963-4972
    • Gutiérrez-Rivas, M.1    Menéndez-Arias, L.2
  • 12
    • 0040578732 scopus 로고    scopus 로고
    • Mutational analysis of Phe160 within the "palm" subdomain of human immunodeficiency virus type 1 reverse transcriptase
    • doi:10.1006/jmbi.1999.2880
    • Gutiérrez-Rivas, M., Ibáñez, A., Martínez, M. A., Domingo, E. & Menéndez-Arias, L. 1999 Mutational analysis of Phe160 within the "palm" subdomain of human immunodeficiency virus type 1 reverse transcriptase. J. Mol. Biol. 290, 615-625. (doi:10.1006/jmbi.1999.2880)
    • (1999) J. Mol. Biol , vol.290 , pp. 615-625
    • Gutiérrez-Rivas, M.1    Ibáñez, A.2    Martínez, M.A.3    Domingo, E.4    Menéndez-Arias, L.5
  • 14
    • 0000359208 scopus 로고
    • Kinetic proofreading: A new mechanism for reducing errors in biosynthetic processes requiring high specificity
    • doi:10.1073/pnas.71.10.4135
    • Hopfield, J. J. 1974 Kinetic proofreading: a new mechanism for reducing errors in biosynthetic processes requiring high specificity. Proc. Natl Acad. Sci. USA 71, 4135-4139. (doi:10.1073/pnas.71.10.4135)
    • (1974) Proc. Natl Acad. Sci. USA , vol.71 , pp. 4135-4139
    • Hopfield, J.J.1
  • 15
    • 8544278025 scopus 로고    scopus 로고
    • DNA polymerase fidelity: Kinetics, structure, and checkpoints
    • doi:10.1021/bi048422z
    • Joyce, C. M. & Benkovic, S. J. 2004 DNA polymerase fidelity: kinetics, structure, and checkpoints. Biochemistry 43, 14 317-14 324. (doi:10.1021/bi048422z)
    • (2004) Biochemistry , vol.43
    • Joyce, C.M.1    Benkovic, S.J.2
  • 17
    • 0034696648 scopus 로고    scopus 로고
    • Role of glutamine 151 of human immunodeficiency virus type-1 reverse transcriptase in substrate selection as assessed by site-directed mutagenesis
    • doi:10.1021/bi991376w
    • Kaushik, N., Talele, T. T., Pandey, P. K., Harris, D., Yadav, P. N. & Pandey, V. N. 2000 Role of glutamine 151 of human immunodeficiency virus type-1 reverse transcriptase in substrate selection as assessed by site-directed mutagenesis. Biochemistry 39, 2912-2920. (doi:10.1021/bi991376w)
    • (2000) Biochemistry , vol.39 , pp. 2912-2920
    • Kaushik, N.1    Talele, T.T.2    Pandey, P.K.3    Harris, D.4    Yadav, P.N.5    Pandey, V.N.6
  • 18
    • 84959609205 scopus 로고
    • On the evolutionary adjustment of spontaneous mutation rates
    • Kimura, M. 1967 On the evolutionary adjustment of spontaneous mutation rates. Genet. Res. 9, 23-34.
    • (1967) Genet. Res , vol.9 , pp. 23-34
    • Kimura, M.1
  • 19
    • 0037022396 scopus 로고    scopus 로고
    • Redundancy, antiredundancy, and the robustness of genomes
    • Krakauer, D. C. & Plotkin, J. B. 2002 Redundancy, antiredundancy, and the robustness of genomes. Proc. Natl Acad. Sci. USA. 99, 1405-1409.
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 1405-1409
    • Krakauer, D.C.1    Plotkin, J.B.2
  • 20
    • 2342419732 scopus 로고    scopus 로고
    • DNA replication fidelity
    • doi:10.1074/jbc.R400006200
    • Kunkel, T. A. 2004 DNA replication fidelity. J. Biol. Chem. 279, 16 895-16 898. (doi:10.1074/jbc.R400006200)
    • (2004) J. Biol. Chem , vol.279
    • Kunkel, T.A.1
  • 21
    • 0032731354 scopus 로고    scopus 로고
    • Uniquely altered DNA replication fidelity conferred by an amino acid change in the nucleotide binding pocket of human immunodeficiency virus type 1 reverse transcriptase
    • Lewis, D. A., Bebenek, K., Beard, W. A., Wilson, S. H. & Kunkel, T. A. 1999 Uniquely altered DNA replication fidelity conferred by an amino acid change in the nucleotide binding pocket of human immunodeficiency virus type 1 reverse transcriptase. J. Biol. Chem. 274, 32 924-32 930.
    • (1999) J. Biol. Chem , vol.274
    • Lewis, D.A.1    Bebenek, K.2    Beard, W.A.3    Wilson, S.H.4    Kunkel, T.A.5
  • 22
    • 0031806738 scopus 로고    scopus 로고
    • Retrovirus mutation rates and their role in genetic variation
    • Mansky, L. M. 1998 Retrovirus mutation rates and their role in genetic variation. J. Gen. Virol. 79, 1337-1345.
    • (1998) J. Gen. Virol , vol.79 , pp. 1337-1345
    • Mansky, L.M.1
  • 23
    • 0037302270 scopus 로고    scopus 로고
    • Influence of reverse transcriptase variants, drugs, and Vpr on human immunodeficiency virus type 1 mutant frequencies
    • doi:10.1128/JVI.77.3.2071-2080.2003
    • Mansky, L. M., Le Rouzic, E., Benichou, S. & Gajary, L. C. 2003 Influence of reverse transcriptase variants, drugs, and Vpr on human immunodeficiency virus type 1 mutant frequencies. J. Virol. 77, 2071-2080. (doi:10.1128/JVI.77.3.2071-2080.2003)
    • (2003) J. Virol , vol.77 , pp. 2071-2080
    • Mansky, L.M.1    Le Rouzic, E.2    Benichou, S.3    Gajary, L.C.4
  • 24
    • 0029757502 scopus 로고    scopus 로고
    • Human immunodeficiency virus type 1 reverse transcriptase: Role of Tyr115 in deoxynucleotide binding and misinsertion fidelity of DNA synthesis
    • Martín-Hernández, A. M., Domingo, E. & Menéndez-Arias, L. 1996 Human immunodeficiency virus type 1 reverse transcriptase: role of Tyr115 in deoxynucleotide binding and misinsertion fidelity of DNA synthesis. EMBO J. 15, 4434-4442.
    • (1996) EMBO J , vol.15 , pp. 4434-4442
    • Martín-Hernández, A.M.1    Domingo, E.2    Menéndez-Arias, L.3
  • 25
    • 0041145086 scopus 로고    scopus 로고
    • Mispair extension fidelity of human immunodeficiency virus type 1 reverse transcriptases with amino acid substitutions affecting Tyr115
    • doi:10.1093/nar/25.7.1383
    • Martín-Hernández, A. M., Gutiérrez-Rivas, M., Domingo, E. & Menéndez-Arias, L. 1997 Mispair extension fidelity of human immunodeficiency virus type 1 reverse transcriptases with amino acid substitutions affecting Tyr115. Nucleic Acids Res. 25, 1383-1389. (doi:10.1093/nar/25.7.1383)
    • (1997) Nucleic Acids Res , vol.25 , pp. 1383-1389
    • Martín-Hernández, A.M.1    Gutiérrez-Rivas, M.2    Domingo, E.3    Menéndez-Arias, L.4
  • 26
    • 0039393614 scopus 로고    scopus 로고
    • Studies on the effects of truncating α-helix E′ of p66 human immunodeficiency virus type 1 reverse transcriptase on template-primer binding and fidelity of DNA synthesis
    • doi:10.1021/bi981830g
    • Menéndez-Arias, L. 1998 Studies on the effects of truncating α-helix E′ of p66 human immunodeficiency virus type 1 reverse transcriptase on template-primer binding and fidelity of DNA synthesis. Biochemistry 37, 16 636-16 644. (doi:10.1021/bi981830g)
    • (1998) Biochemistry , vol.37
    • Menéndez-Arias, L.1
  • 27
    • 0030060362 scopus 로고    scopus 로고
    • Role of methionine 184 of human immunodeficiency virus type-1 reverse transcriptase in the polymerase function and fidelity of DNA synthesis
    • doi:10.1021/bi9516642
    • Pandey, V. N., Kaushik, N., Rege, N., Sarafianos, S. G., Yadav, P. N. & Modak, M. J. 1996 Role of methionine 184 of human immunodeficiency virus type-1 reverse transcriptase in the polymerase function and fidelity of DNA synthesis. Biochemistry 35, 2168-2179. (doi:10.1021/bi9516642)
    • (1996) Biochemistry , vol.35 , pp. 2168-2179
    • Pandey, V.N.1    Kaushik, N.2    Rege, N.3    Sarafianos, S.G.4    Yadav, P.N.5    Modak, M.J.6
  • 28
    • 0029967721 scopus 로고    scopus 로고
    • HIV-1 dynamics in vivo: Virion clearance rate, infected cell life-span, and viral generation time
    • Perelson, A. S., Neumann, A. U., Markowitz, M., Leonard, J. M. & Ho, D. D. 1996 HIV-1 dynamics in vivo: virion clearance rate, infected cell life-span, and viral generation time. Science 271, 1582-1586.
    • (1996) Science , vol.271 , pp. 1582-1586
    • Perelson, A.S.1    Neumann, A.U.2    Markowitz, M.3    Leonard, J.M.4    Ho, D.D.5
  • 29
    • 0038809107 scopus 로고    scopus 로고
    • A single mutation in poliovirus RNA-dependent RNA polymerase confers resistance to mutagenic nucleotide analogs via increased fidelity
    • doi:10.1073/pnas.1232294100
    • Pfeiffer, J. K. & Kirkegaard, K. 2003 A single mutation in poliovirus RNA-dependent RNA polymerase confers resistance to mutagenic nucleotide analogs via increased fidelity. Proc. Natl Acad. Sci. USA 100, 7289-7294. (doi:10.1073/pnas.1232294100)
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 7289-7294
    • Pfeiffer, J.K.1    Kirkegaard, K.2
  • 30
    • 0001342886 scopus 로고
    • On r- and K-selection
    • doi:10.1086/282697
    • Pianka, E. R. 1970 On r- and K-selection. Am. Nat. 104, 592-597. (doi:10.1086/282697)
    • (1970) Am. Nat , vol.104 , pp. 592-597
    • Pianka, E.R.1
  • 31
    • 0029150042 scopus 로고
    • Human immunodeficiency virus reverse transcriptase substrate-induced conformational changes and the mechanism of inhibition by nonnucleoside inhibitors
    • doi:10.1073/pnas.92.17.8046
    • Rittinger, K., Divita, G. & Goody, R. S. 1995 Human immunodeficiency virus reverse transcriptase substrate-induced conformational changes and the mechanism of inhibition by nonnucleoside inhibitors. Proc. Natl Acad. Sci. USA 92, 8046-8049. (doi:10.1073/pnas.92.17.8046)
    • (1995) Proc. Natl Acad. Sci. USA , vol.92 , pp. 8046-8049
    • Rittinger, K.1    Divita, G.2    Goody, R.S.3
  • 32
    • 0028361849 scopus 로고
    • Evolution of antigen drift/switching: Continuously evading pathogens
    • doi:10.1006/jtbi.1994.1110
    • Sasaki, A. 1994 Evolution of antigen drift/switching: continuously evading pathogens. J. Theor. Biol. 168, 291-308. (doi:10.1006/jtbi.1994.1110)
    • (1994) J. Theor. Biol , vol.168 , pp. 291-308
    • Sasaki, A.1
  • 33
    • 0037183526 scopus 로고    scopus 로고
    • A reexamination of the nucleotide incorporation fidelity of DNA polymerases
    • doi:10.1021/bi026021i
    • Showalter, A. K. & Tsai, M. D. 2002 A reexamination of the nucleotide incorporation fidelity of DNA polymerases. Biochemistry 41, 10 571-10 576. (doi:10.1021/bi026021i)
    • (2002) Biochemistry , vol.41
    • Showalter, A.K.1    Tsai, M.D.2
  • 34
    • 0016220238 scopus 로고
    • The hitch-hiking effect of a favourable gene
    • Smith, J. M. & Haigh, J. 1974 The hitch-hiking effect of a favourable gene. Genet. Res. 23, 23-35.
    • (1974) Genet. Res , vol.23 , pp. 23-35
    • Smith, J.M.1    Haigh, J.2
  • 35
    • 0030620273 scopus 로고    scopus 로고
    • Evolution of high mutation rates in experimental populations of E. coli
    • doi:10.1038/42701
    • Sniegowski, P. D., Gerrish, P. J. & Lenski, R. E. 1997 Evolution of high mutation rates in experimental populations of E. coli. Nature 387, 703-705. (doi:10.1038/42701)
    • (1997) Nature , vol.387 , pp. 703-705
    • Sniegowski, P.D.1    Gerrish, P.J.2    Lenski, R.E.3
  • 36
    • 0034542564 scopus 로고    scopus 로고
    • Sniegowski, P. D., Gerrish, P. J., Johnson, T. & Shaver, A. 2000 The evolution of mutation rates: separating causes from consequences. BioEssays 22, 1057-1066. (doi:10.1002/1521-1878(200012)22: 12〈1057::AID-BIES3〉3.0.CO;2-W)
    • Sniegowski, P. D., Gerrish, P. J., Johnson, T. & Shaver, A. 2000 The evolution of mutation rates: separating causes from consequences. BioEssays 22, 1057-1066. (doi:10.1002/1521-1878(200012)22: 12〈1057::AID-BIES3〉3.0.CO;2-W)
  • 38
    • 0032524661 scopus 로고    scopus 로고
    • Transcriptional fidelity and proofreading by RNA polymerase II
    • doi:10.1016/S0092-8674(00)81191-5
    • Thomas, M. J., Platas, A. A. & Hawley, D. K. 1998 Transcriptional fidelity and proofreading by RNA polymerase II. Cell 93, 627-637. (doi:10.1016/S0092-8674(00)81191-5)
    • (1998) Cell , vol.93 , pp. 627-637
    • Thomas, M.J.1    Platas, A.A.2    Hawley, D.K.3
  • 39
    • 0033214560 scopus 로고    scopus 로고
    • Mutations in the primer grip region of HIV reverse transcriptase can increase replication fidelity
    • doi:10.1074/jbc.274.40.28175
    • Wisniewski, M., Palaniappan, C., Fu, Z., Le Grice, S. F., Fay, P. & Bambara, R. A. 1999 Mutations in the primer grip region of HIV reverse transcriptase can increase replication fidelity. J. Biol. Chem. 274, 28 175-28 184. (doi:10.1074/jbc.274.40.28175)
    • (1999) J. Biol. Chem , vol.274
    • Wisniewski, M.1    Palaniappan, C.2    Fu, Z.3    Le Grice, S.F.4    Fay, P.5    Bambara, R.A.6


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