-
1
-
-
0014096699
-
Conformational differences between the biologically active and inactive forms of a transfer ribonucleic acid
-
Adams, A., Lindahl, T., and Fresco, J.R. 1967. Conformational differences between the biologically active and inactive forms of a transfer ribonucleic acid. Proc. Natl. Acad. Sci. 57: 1684-1691.
-
(1967)
Proc. Natl. Acad. Sci
, vol.57
, pp. 1684-1691
-
-
Adams, A.1
Lindahl, T.2
Fresco, J.R.3
-
4
-
-
4243539377
-
Electronic structure calculations on workstation computers: The program system turbomole
-
Ahlrichs, R., Bar, M., Haser, M., Horn, H., and Kolmel, C. 1989. Electronic structure calculations on workstation computers: The program system turbomole. Chem. Phys. Lett. 162: 165-169.
-
(1989)
Chem. Phys. Lett
, vol.162
, pp. 165-169
-
-
Ahlrichs, R.1
Bar, M.2
Haser, M.3
Horn, H.4
Kolmel, C.5
-
5
-
-
0000189651
-
Density-functional thermochemistry. III. The role of exact exchange
-
Becke, A.D. 1993. Density-functional thermochemistry. III. The role of exact exchange. J. Chem. Phys. 98: 5648-5652.
-
(1993)
J. Chem. Phys
, vol.98
, pp. 5648-5652
-
-
Becke, A.D.1
-
6
-
-
11144255959
-
Density-functional thermochemistry. IV. A new dynamical correlation functional and implications for exact-exchange mixing
-
Becke, A.D. 1996. Density-functional thermochemistry. IV. A new dynamical correlation functional and implications for exact-exchange mixing. J. Chem. Phys. 104: 1040-1046.
-
(1996)
J. Chem. Phys
, vol.104
, pp. 1040-1046
-
-
Becke, A.D.1
-
7
-
-
84890021933
-
The calculation of small molecular interactions by the differences of separate total energies. Some procedures with reduced errors
-
Boys, S.F. and Bernardi, F. 1970. The calculation of small molecular interactions by the differences of separate total energies. Some procedures with reduced errors. Mol. Phys. 19: 553-566.
-
(1970)
Mol. Phys
, vol.19
, pp. 553-566
-
-
Boys, S.F.1
Bernardi, F.2
-
8
-
-
0031274672
-
2+): Nonempirical ab initio calculations on structures, energies, and nonadditivity of the interaction
-
2+): Nonempirical ab initio calculations on structures, energies, and nonadditivity of the interaction. J. Phys. Chem. B 101: 9670-9677.
-
(1997)
J. Phys. Chem. B
, vol.101
, pp. 9670-9677
-
-
Burda, J.V.1
Šponer, J.2
Leszczynski, J.3
Hobza, P.4
-
9
-
-
0003251937
-
Structures of base pairs involving at least two hydrogen bonds
-
2nd ed, eds. R.F. Gesteland et al, pp, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York
-
Burkard, M.E., Turner, D.H., and Tinoco Jr., I. 1999. Structures of base pairs involving at least two hydrogen bonds. In The RNA world, 2nd ed. (eds. R.F. Gesteland et al.), pp. 675-680. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.
-
(1999)
The RNA world
, pp. 675-680
-
-
Burkard, M.E.1
Turner, D.H.2
Tinoco Jr., I.3
-
10
-
-
33746614482
-
Gaussian basis sets for use in correlated molecular calculations. I. The atoms boron through neon and hydrogen
-
Dunning Jr., T.H. 1989. Gaussian basis sets for use in correlated molecular calculations. I. The atoms boron through neon and hydrogen. J. Chem. Phys. 90: 1007-1023.
-
(1989)
J. Chem. Phys
, vol.90
, pp. 1007-1023
-
-
Dunning Jr., T.H.1
-
11
-
-
0037124685
-
Orbital interactions in strong and weak hydrogen bonds are essential for DNA replication
-
Fonseca Guerra, C. and Bickelhaupt, F.M. 2002. Orbital interactions in strong and weak hydrogen bonds are essential for DNA replication. Angew. Chem. Int. Ed. 41: 2092-2095.
-
(2002)
Angew. Chem. Int. Ed
, vol.41
, pp. 2092-2095
-
-
Fonseca Guerra, C.1
Bickelhaupt, F.M.2
-
12
-
-
14544282086
-
The role of tRNA as a molecular spring in decoding, accommodation, and peptidyl transfer
-
Frank, J., Sengupta, J., Gao, H., Li, W., Valle, M., Zavialov, A., and Ehrenberg, M. 2005. The role of tRNA as a molecular spring in decoding, accommodation, and peptidyl transfer. FEBS Lett. 579: 959-962.
-
(2005)
FEBS Lett
, vol.579
, pp. 959-962
-
-
Frank, J.1
Sengupta, J.2
Gao, H.3
Li, W.4
Valle, M.5
Zavialov, A.6
Ehrenberg, M.7
-
14
-
-
0027191379
-
Structure of the archaeal transfer RNA nucleoside G*-15 (2-amino-4,7-dihydro-4-oxo-7-beta-D-ribofuranosyl-1H- pyrrolo[2,3-d]pyrimidine-5-carboximi dam ide [archaeosine])
-
Gregson, J.M., Crain, P.F., Edmonds, C.G., Gupta, R., Hashizume, T., Phillipson, D.W., and McCloskey, J.A. 1993. Structure of the archaeal transfer RNA nucleoside G*-15 (2-amino-4,7-dihydro-4-oxo-7-beta-D-ribofuranosyl-1H- pyrrolo[2,3-d]pyrimidine-5-carboximi dam ide [archaeosine]). J. Biol. Chem. 268: 10076-10086.
-
(1993)
J. Biol. Chem
, vol.268
, pp. 10076-10086
-
-
Gregson, J.M.1
Crain, P.F.2
Edmonds, C.G.3
Gupta, R.4
Hashizume, T.5
Phillipson, D.W.6
McCloskey, J.A.7
-
15
-
-
4043164887
-
Accurate description of van der Waals complexes by density functional theory including empirical corrections
-
Grimme, S. 2004. Accurate description of van der Waals complexes by density functional theory including empirical corrections. J. Comput. Chem. 25: 1463-1473.
-
(2004)
J. Comput. Chem
, vol.25
, pp. 1463-1473
-
-
Grimme, S.1
-
16
-
-
0024309855
-
Structure of an unmodified tRNA molecule
-
Hall, K.B., Sampson, J.R., Uhlenbeck, O.C., and Redfield, A.G. 1989. Structure of an unmodified tRNA molecule. Biochemistry 28: 5794-5801.
-
(1989)
Biochemistry
, vol.28
, pp. 5794-5801
-
-
Hall, K.B.1
Sampson, J.R.2
Uhlenbeck, O.C.3
Redfield, A.G.4
-
17
-
-
7544240563
-
Shape-selective RNA recognition by cysteinyl-tRNA synthetase
-
Hauenstein, S., Zhang, C.M., Hou, Y.M., and Perona, J.J. 2004. Shape-selective RNA recognition by cysteinyl-tRNA synthetase. Nat. Struct. Mol. Biol. 11: 1134-1141.
-
(2004)
Nat. Struct. Mol. Biol
, vol.11
, pp. 1134-1141
-
-
Hauenstein, S.1
Zhang, C.M.2
Hou, Y.M.3
Perona, J.J.4
-
18
-
-
32644447756
-
Post-transcriptional nucleotide modification and alternative folding of RNA
-
Helm, M. 2006. Post-transcriptional nucleotide modification and alternative folding of RNA. Nucleic Acids Res. 34: 721-733.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 721-733
-
-
Helm, M.1
-
19
-
-
0032052242
-
The presence of modified nucleotides is required for cloverleaf folding of a human mitochondrial tRNA
-
Helm, M., Brule, H., Degoul, F., Cepanec, C., Leroux, J.P., Giege, R., and Florentz, C. 1998. The presence of modified nucleotides is required for cloverleaf folding of a human mitochondrial tRNA. Nucleic Acids Res. 26: 1636-1643.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 1636-1643
-
-
Helm, M.1
Brule, H.2
Degoul, F.3
Cepanec, C.4
Leroux, J.P.5
Giege, R.6
Florentz, C.7
-
21
-
-
0000965687
-
Structure, energetics, and dynamics of the nucleic acid base pairs: Nonempirical ab initio calculations
-
Hobza, P. and Šponer, J. 1999. Structure, energetics, and dynamics of the nucleic acid base pairs: Nonempirical ab initio calculations. Chem. Rev. 99: 3247-3276.
-
(1999)
Chem. Rev
, vol.99
, pp. 3247-3276
-
-
Hobza, P.1
Šponer, J.2
-
22
-
-
0037010001
-
Toward true DNA base-stacking energies: MP2, CCSD(T), and complete basis set calculations
-
Hobza, P. and Šponer, J. 2002. Toward true DNA base-stacking energies: MP2, CCSD(T), and complete basis set calculations. J. Am. Chem. Soc. 124: 11802-11808.
-
(2002)
J. Am. Chem. Soc
, vol.124
, pp. 11802-11808
-
-
Hobza, P.1
Šponer, J.2
-
23
-
-
0018781460
-
Paramagnetic ion effects on the nuclear magnetic resonance spectrum of transfer ribonucleic acid: Assignment of the 15-48 tertiary resonance
-
Hurd, R.E., Azhderian, E., and Reid, B.R. 1979. Paramagnetic ion effects on the nuclear magnetic resonance spectrum of transfer ribonucleic acid: Assignment of the 15-48 tertiary resonance. Biochemistry 18: 4012-4017.
-
(1979)
Biochemistry
, vol.18
, pp. 4012-4017
-
-
Hurd, R.E.1
Azhderian, E.2
Reid, B.R.3
-
25
-
-
0015218722
-
The interconvertibility of various bacterial transfer ribonucleic acids between an active and an inactive stable configuration
-
Ishida, T., Snyder, D., and Sueoka, N. 1971. The interconvertibility of various bacterial transfer ribonucleic acids between an active and an inactive stable configuration. J. Biol. Chem. 246: 5965-5969.
-
(1971)
J. Biol. Chem
, vol.246
, pp. 5965-5969
-
-
Ishida, T.1
Snyder, D.2
Sueoka, N.3
-
26
-
-
0038613099
-
Alternative tertiary structure of tRNA for recognition by a post-transcriptional modification enzyme
-
Ishitani, R., Nureki, O., Nameki, N., Okada, N., Nishimura, S., and Yokoyama, S. 2003. Alternative tertiary structure of tRNA for recognition by a post-transcriptional modification enzyme. Cell 113: 383-394.
-
(2003)
Cell
, vol.113
, pp. 383-394
-
-
Ishitani, R.1
Nureki, O.2
Nameki, N.3
Okada, N.4
Nishimura, S.5
Yokoyama, S.6
-
27
-
-
0037310429
-
Biosynthesis of the 7-deazaguanosine hyper-modified nucleosides of transfer RNA
-
Iwata-Reuyl, D. 2003. Biosynthesis of the 7-deazaguanosine hyper-modified nucleosides of transfer RNA. Bioorg. Chem. 31: 24-43.
-
(2003)
Bioorg. Chem
, vol.31
, pp. 24-43
-
-
Iwata-Reuyl, D.1
-
28
-
-
0017361887
-
A crystallographic study of metal-binding to yeast phenylalanine transfer RNA
-
Jack, A., Ladner, J.E., Rhodes, D., Brown, R.S., and Klug, A. 1977. A crystallographic study of metal-binding to yeast phenylalanine transfer RNA. J. Mol. Biol. 111: 315-328.
-
(1977)
J. Mol. Biol
, vol.111
, pp. 315-328
-
-
Jack, A.1
Ladner, J.E.2
Rhodes, D.3
Brown, R.S.4
Klug, A.5
-
29
-
-
0016146021
-
Three-dimensional tertiary structure of yeast phenylalanine transfer RNA
-
Kim, S.H., Suddath, F.L., Quigley, G.J., McPherson, A., Sussman, J.L., Wang, A.H., Seeman, N.C., and Rich, A. 1974. Three-dimensional tertiary structure of yeast phenylalanine transfer RNA. Science 185: 435-440.
-
(1974)
Science
, vol.185
, pp. 435-440
-
-
Kim, S.H.1
Suddath, F.L.2
Quigley, G.J.3
McPherson, A.4
Sussman, J.L.5
Wang, A.H.6
Seeman, N.C.7
Rich, A.8
-
30
-
-
84961980743
-
Cosmo: A new approach to dielectric screening in solvents with explicit expressions for the screening energy and its gradient
-
Klamt, A. and Schüürmann, G. 1993. Cosmo: A new approach to dielectric screening in solvents with explicit expressions for the screening energy and its gradient. J. Chem. Soc. Perkin Trans. 2 5: 799-805.
-
(1993)
J. Chem. Soc. Perkin Trans. 2
, vol.5
, pp. 799-805
-
-
Klamt, A.1
Schüürmann, G.2
-
32
-
-
37549004997
-
Can (semi)local density functional theory account for the London dispersion forces?
-
Kristyán, S. and Pulay, P. 1994. Can (semi)local density functional theory account for the London dispersion forces? Chem. Phys. Lett. 229: 175-180.
-
(1994)
Chem. Phys. Lett
, vol.229
, pp. 175-180
-
-
Kristyán, S.1
Pulay, P.2
-
33
-
-
0345491105
-
Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density
-
Lee, C., Yang, W., and Parr, R.G. 1988. Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density. Phys. Rev. B 37: 785-789.
-
(1988)
Phys. Rev. B
, vol.37
, pp. 785-789
-
-
Lee, C.1
Yang, W.2
Parr, R.G.3
-
34
-
-
0036798116
-
RNA canonical and noncanonical base pairing types: A recognition method and complete repertoire
-
Lemieux, S. and Major, F. 2002. RNA canonical and noncanonical base pairing types: A recognition method and complete repertoire. Nucleic Acids Res. 30: 4250-4263.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 4250-4263
-
-
Lemieux, S.1
Major, F.2
-
35
-
-
0035010211
-
Geometric nomenclature and classification of RNA base pairs
-
Leontis, N.B. and Westhof, E. 2001. Geometric nomenclature and classification of RNA base pairs. RNA 7: 499-512.
-
(2001)
RNA
, vol.7
, pp. 499-512
-
-
Leontis, N.B.1
Westhof, E.2
-
36
-
-
0037102491
-
The non-Watson-Crick base pairs and their associated isostericity matrices
-
Leontis, N.B., Stombaugh, J., and Westhof, E. 2002. The non-Watson-Crick base pairs and their associated isostericity matrices. Nucleic Acids Res. 30: 3497-3531.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 3497-3531
-
-
Leontis, N.B.1
Stombaugh, J.2
Westhof, E.3
-
37
-
-
17844366343
-
Recurrent structural RNA motifs, isostericity matrices, and sequence alignments
-
Lescoute, A., Leontis, N.B., Massire, C., and Westhof, E. 2005. Recurrent structural RNA motifs, isostericity matrices, and sequence alignments. Nucleic Acids Res. 33: 2395-2409.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 2395-2409
-
-
Lescoute, A.1
Leontis, N.B.2
Massire, C.3
Westhof, E.4
-
38
-
-
0014688034
-
Detailed molecular model for transfer ribonucleic acid
-
Levitt, M. 1969. Detailed molecular model for transfer ribonucleic acid. Nature 224: 759-763.
-
(1969)
Nature
, vol.224
, pp. 759-763
-
-
Levitt, M.1
-
39
-
-
0013898917
-
Renaturation of transfer ribonucleic acids through site binding of magnesium
-
Lindahl, T., Adams, A., and Fresco, J.R. 1966. Renaturation of transfer ribonucleic acids through site binding of magnesium. Proc. Natl. Acad. Sci. 55: 941-948.
-
(1966)
Proc. Natl. Acad. Sci
, vol.55
, pp. 941-948
-
-
Lindahl, T.1
Adams, A.2
Fresco, J.R.3
-
42
-
-
0032542064
-
Conformational transitions of an unmodified tRNA: Implications for RNA folding
-
Maglott, E.J., Deo, S.S., Przykorska, A., and Glick, G.D. 1998. Conformational transitions of an unmodified tRNA: Implications for RNA folding. Biochemistry 37: 16349-16359.
-
(1998)
Biochemistry
, vol.37
, pp. 16349-16359
-
-
Maglott, E.J.1
Deo, S.S.2
Przykorska, A.3
Glick, G.D.4
-
43
-
-
0345720252
-
Additivity methods in molecular polarizability
-
Miller, K.J. 1990. Additivity methods in molecular polarizability. J. Am. Chem. Soc. 112: 8533-8542.
-
(1990)
J. Am. Chem. Soc
, vol.112
, pp. 8533-8542
-
-
Miller, K.J.1
-
44
-
-
0032564317
-
-
Mohammadi, S., Klement, R., Shchyolkina, A.K., Liquier, J., Jovin, T.M., and Taillandier, E. 1998. FTIR and UV spectroscopy of parallel-stranded DNAs with mixed A*T/G*C sequences and their A*T/I*C analogues. Biochemistry 37: 16529-16537.
-
Mohammadi, S., Klement, R., Shchyolkina, A.K., Liquier, J., Jovin, T.M., and Taillandier, E. 1998. FTIR and UV spectroscopy of parallel-stranded DNAs with mixed A*T/G*C sequences and their A*T/I*C analogues. Biochemistry 37: 16529-16537.
-
-
-
-
45
-
-
6944251055
-
Note on an approximation treatment for many-electron systems
-
Møller, C. and Plesset, M.S. 1934. Note on an approximation treatment for many-electron systems. Phys. Rev. 46: 618-622.
-
(1934)
Phys. Rev
, vol.46
, pp. 618-622
-
-
Møller, C.1
Plesset, M.S.2
-
46
-
-
0036081434
-
NCIR: A database of noncanonical interactions in known RNA structures
-
Nagaswamy, U., Larios-Sanz, M., Hury, J., Collins, S., Zhang, Z., Zhao, Q., and Fox, G.E. 2002. NCIR: A database of noncanonical interactions in known RNA structures. Nucleic Acids Res. 30: 395-397.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 395-397
-
-
Nagaswamy, U.1
Larios-Sanz, M.2
Hury, J.3
Collins, S.4
Zhang, Z.5
Zhao, Q.6
Fox, G.E.7
-
48
-
-
33644844986
-
Accurate energies of hydrogen bonded nucleic acid base pairs and triplets in tRNA tertiary interactions
-
Oliva, R., Cavallo, L., and Tramontano, A. 2006. Accurate energies of hydrogen bonded nucleic acid base pairs and triplets in tRNA tertiary interactions. Nucleic Acids Res. 34: 865-879.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 865-879
-
-
Oliva, R.1
Cavallo, L.2
Tramontano, A.3
-
49
-
-
0022779159
-
Can the double helix be parallel?
-
Pattabiraman, N. 1986. Can the double helix be parallel? Biopolymers 25: 1603-1606.
-
(1986)
Biopolymers
, vol.25
, pp. 1603-1606
-
-
Pattabiraman, N.1
-
50
-
-
4243943295
-
Generalized gradient approximation made simple
-
Perdew, J.P., Burke, K., and Ernzerhof, M. 1996. Generalized gradient approximation made simple. Phys. Rev. Lett. 77: 3865-3868.
-
(1996)
Phys. Rev. Lett
, vol.77
, pp. 3865-3868
-
-
Perdew, J.P.1
Burke, K.2
Ernzerhof, M.3
-
51
-
-
24344439730
-
Are the hydrogen bonds of RNA (AU) stronger than those of DNA (AT)? A quantum mechanics study
-
Perez, A., Šponer, J., Jurecka, P., Hobza, P., Luque, F.J., and Orozco, M. 2005. Are the hydrogen bonds of RNA (AU) stronger than those of DNA (AT)? A quantum mechanics study. Chemistry 11: 5062-5066.
-
(2005)
Chemistry
, vol.11
, pp. 5062-5066
-
-
Perez, A.1
Šponer, J.2
Jurecka, P.3
Hobza, P.4
Luque, F.J.5
Orozco, M.6
-
52
-
-
4243476736
-
A density-functional study of van der Waals forces: Rare gas diatomics
-
Pérez-Jordá, J. and Becke, A.D. 1995. A density-functional study of van der Waals forces: Rare gas diatomics. Chem. Phys. Lett. 233: 134-137.
-
(1995)
Chem. Phys. Lett
, vol.233
, pp. 134-137
-
-
Pérez-Jordá, J.1
Becke, A.D.2
-
54
-
-
0001369096
-
Calorimetric characterization of parallel-stranded DNA: Stability, conformational flexibility, and ion binding
-
Rentzeperis, D., Rippe, K., Jovin, T.M., and Marky, L.A. 1992. Calorimetric characterization of parallel-stranded DNA: Stability, conformational flexibility, and ion binding. J. Am. Chem. Soc. 114: 5926-5928.
-
(1992)
J. Am. Chem. Soc
, vol.114
, pp. 5926-5928
-
-
Rentzeperis, D.1
Rippe, K.2
Jovin, T.M.3
Marky, L.A.4
-
55
-
-
0017916842
-
The three-dimensional structure of transfer RNA
-
Rich, A. and Kim, S.H. 1978. The three-dimensional structure of transfer RNA. Sci. Am. 238: 52-62.
-
(1978)
Sci. Am
, vol.238
, pp. 52-62
-
-
Rich, A.1
Kim, S.H.2
-
56
-
-
0025300695
-
A parallel stranded linear DNA duplex incorporating dG-dC base pairs
-
Rippe, K., Ramsing, N.B., Klement, R., and Jovin, T.M. 1990. A parallel stranded linear DNA duplex incorporating dG-dC base pairs. J. Biomol. Struct. Dyn. 7: 1199-1209.
-
(1990)
J. Biomol. Struct. Dyn
, vol.7
, pp. 1199-1209
-
-
Rippe, K.1
Ramsing, N.B.2
Klement, R.3
Jovin, T.M.4
-
57
-
-
0016354122
-
Structure of yeast phenylalanine tRNA at 3 Aring; resolution
-
Robertus, J.D., Ladner, J.E., Finch, J.T., Rhodes, D., Brown, R.S., Clark, B.F., and Klug, A. 1974. Structure of yeast phenylalanine tRNA at 3 Aring; resolution. Nature 250: 546-551.
-
(1974)
Nature
, vol.250
, pp. 546-551
-
-
Robertus, J.D.1
Ladner, J.E.2
Finch, J.T.3
Rhodes, D.4
Brown, R.S.5
Clark, B.F.6
Klug, A.7
-
58
-
-
0032918555
-
The RNA Modification Database: 1999 update
-
Rozenski, J., Crain, P.F., and McCloskey, J.A. 1999. The RNA Modification Database: 1999 update. Nucleic Acids Res. 27: 196-197.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 196-197
-
-
Rozenski, J.1
Crain, P.F.2
McCloskey, J.A.3
-
59
-
-
0023953676
-
Biochemical and physical characterization of an unmodified yeast phenylalanine transfer RNA transcribed in vitro
-
Sampson, J.R. and Uhlenbeck, O.C. 1988. Biochemical and physical characterization of an unmodified yeast phenylalanine transfer RNA transcribed in vitro. Proc. Natl. Acad. Sci. 85: 1033-1037.
-
(1988)
Proc. Natl. Acad. Sci
, vol.85
, pp. 1033-1037
-
-
Sampson, J.R.1
Uhlenbeck, O.C.2
-
61
-
-
0033862354
-
The crystal structure of yeast phenylalanine tRNA at 1.93 Å resolution: A classic structure revisited
-
Shi, H. and Moore, P.B. 2000. The crystal structure of yeast phenylalanine tRNA at 1.93 Å resolution: A classic structure revisited. RNA 6: 1091-1105.
-
(2000)
RNA
, vol.6
, pp. 1091-1105
-
-
Shi, H.1
Moore, P.B.2
-
62
-
-
0032728690
-
Metal ions in noncomplementary DNA base pairs: An ab initio study of Cu(I), Ag(I), and Au(I) complexes with the cytosine-adenine base pair
-
Šponer, J., Sabat, M., Burda, J.V., Leszczynski, J., Hobza, P., and Lippert, B. 1999. Metal ions in noncomplementary DNA base pairs: An ab initio study of Cu(I), Ag(I), and Au(I) complexes with the cytosine-adenine base pair. J. Biol. Inorg. Chem. 4: 537-545.
-
(1999)
J. Biol. Inorg. Chem
, vol.4
, pp. 537-545
-
-
Šponer, J.1
Sabat, M.2
Burda, J.V.3
Leszczynski, J.4
Hobza, P.5
Lippert, B.6
-
63
-
-
0002594455
-
Electronic properties, hydrogen bonding, stacking, and cation binding of DNA and RNA bases
-
Šponer, J., Leszczynski, J., and Hobza, P. 2001. Electronic properties, hydrogen bonding, stacking, and cation binding of DNA and RNA bases. Biopolymers 61: 3-31.
-
(2001)
Biopolymers
, vol.61
, pp. 3-31
-
-
Šponer, J.1
Leszczynski, J.2
Hobza, P.3
-
64
-
-
4043137165
-
Accurate interaction energies of hydrogen-bonded nucleic acid base pairs
-
Šponer, J., Jurecka, P., and Hobza, P. 2004. Accurate interaction energies of hydrogen-bonded nucleic acid base pairs. J. Am. Chem. Soc. 126: 10142-10151.
-
(2004)
J. Am. Chem. Soc
, vol.126
, pp. 10142-10151
-
-
Šponer, J.1
Jurecka, P.2
Hobza, P.3
-
65
-
-
13444288185
-
Compilation of tRNA sequences and sequences of tRNA genes
-
Sprinzl, M. and Vassilenko, K.S. 2005. Compilation of tRNA sequences and sequences of tRNA genes. Nucleic Acids Res. 33: D139-D140.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Sprinzl, M.1
Vassilenko, K.S.2
-
66
-
-
0031804156
-
Compilation of tRNA sequences and sequences of tRNA genes
-
Sprinzl, M., Horn, C., Brown, M., Ioudovitch, A., and Steinberg, S. 1998. Compilation of tRNA sequences and sequences of tRNA genes. Nucleic Acids Res. 26: 148-153.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 148-153
-
-
Sprinzl, M.1
Horn, C.2
Brown, M.3
Ioudovitch, A.4
Steinberg, S.5
-
67
-
-
0018077590
-
Crystal structure of yeast phenylalanine transfer RNA. I. Crystallographic refinement
-
Sussman, J.L., Holbrook, S.R., Warrant, R.W., Church, G.M., and Kim, S.H. 1978. Crystal structure of yeast phenylalanine transfer RNA. I. Crystallographic refinement. J. Mol. Biol. 123: 607-630.
-
(1978)
J. Mol. Biol
, vol.123
, pp. 607-630
-
-
Sussman, J.L.1
Holbrook, S.R.2
Warrant, R.W.3
Church, G.M.4
Kim, S.H.5
-
68
-
-
11244321707
-
Hydrogen bonds of RNA are stronger than those of DNA, but NMR monitors only presence of methyl substituent in uracil/thymine
-
Swart, M., Fonseca Guerra, C., and Bickelhaupt, F.M. 2004. Hydrogen bonds of RNA are stronger than those of DNA, but NMR monitors only presence of methyl substituent in uracil/thymine. J. Am. Chem. Soc. 126: 16718-16719.
-
(2004)
J. Am. Chem. Soc
, vol.126
, pp. 16718-16719
-
-
Swart, M.1
Fonseca Guerra, C.2
Bickelhaupt, F.M.3
-
69
-
-
0346456864
-
Theoretical calculation of the NMR spin-spin coupling constants and the NMR shifts allow distinguishability between the specific direct and the water-mediated binding of a divalent metal cation to guanine
-
Sychrovský, V., Šponer, J., and Hobza, P. 2004. Theoretical calculation of the NMR spin-spin coupling constants and the NMR shifts allow distinguishability between the specific direct and the water-mediated binding of a divalent metal cation to guanine. J. Am. Chem. Soc. 126: 663-672.
-
(2004)
J. Am. Chem. Soc
, vol.126
, pp. 663-672
-
-
Sychrovský, V.1
Šponer, J.2
Hobza, P.3
-
70
-
-
12644294350
-
The binding of metals to tRNA
-
Teeter, M.M., Quigley, G.J., and Rich, A. 1981. The binding of metals to tRNA. Adv. Inorg. Biochem. 3: 233-272.
-
(1981)
Adv. Inorg. Biochem
, vol.3
, pp. 233-272
-
-
Teeter, M.M.1
Quigley, G.J.2
Rich, A.3
-
71
-
-
84961980477
-
Quantum mechanical continuum solvation models
-
Tomasi, J., Mennucci, B., and Cammi, R. 2005. Quantum mechanical continuum solvation models. Chem. Rev. 105: 2999-3094.
-
(2005)
Chem. Rev
, vol.105
, pp. 2999-3094
-
-
Tomasi, J.1
Mennucci, B.2
Cammi, R.3
-
72
-
-
0036646535
-
Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process
-
Valle, M., Sengupta, J., Swami, N.K., Grassucci, R.A., Burkhardt, N., Nierhaus, K.H., Agrawal, R.K., and Frank, J. 2002. Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process. EMBO J. 21: 3557-3567.
-
(2002)
EMBO J
, vol.21
, pp. 3557-3567
-
-
Valle, M.1
Sengupta, J.2
Swami, N.K.3
Grassucci, R.A.4
Burkhardt, N.5
Nierhaus, K.H.6
Agrawal, R.K.7
Frank, J.8
-
73
-
-
0242407184
-
Incorporation of aminoacyl-tRNA into the ribosome as seen by cryo-electron microscopy
-
Valle, M., Zavialov, A., Li, W., Stagg, S.M., Sengupta, J., Nielsen, R.C., Nissen, P., Harvey, S.C., Ehrenberg, M., and Frank, J. 2003. Incorporation of aminoacyl-tRNA into the ribosome as seen by cryo-electron microscopy. Nat. Struct. Biol. 10: 899-906.
-
(2003)
Nat. Struct. Biol
, vol.10
, pp. 899-906
-
-
Valle, M.1
Zavialov, A.2
Li, W.3
Stagg, S.M.4
Sengupta, J.5
Nielsen, R.C.6
Nissen, P.7
Harvey, S.C.8
Ehrenberg, M.9
Frank, J.10
-
74
-
-
0035951841
-
tRNA recognition of tRNA-guanine transglycosylase from a hyperthermophilic archaeon
-
Watanabe, M., Nameki, N., Matsuo-Takasaki, M., Nishimura, S., and Okada, N. 2001. tRNA recognition of tRNA-guanine transglycosylase from a hyperthermophilic archaeon, Pyrococcus horikoshii. J. Biol. Chem. 276: 2387-2394.
-
(2001)
Pyrococcus horikoshii. J. Biol. Chem
, vol.276
, pp. 2387-2394
-
-
Watanabe, M.1
Nameki, N.2
Matsuo-Takasaki, M.3
Nishimura, S.4
Okada, N.5
-
75
-
-
26244461462
-
Balanced basis sets of split valence, triple ζ valence and quadruple ζ valence quality for H to Rn: Design and assessment of accuracy
-
Weigend, F. and Ahlrichs, R. 2005. Balanced basis sets of split valence, triple ζ valence and quadruple ζ valence quality for H to Rn: Design and assessment of accuracy. Phys. Chem. Chem. Phys. 7: 3297-3305.
-
(2005)
Phys. Chem. Chem. Phys
, vol.7
, pp. 3297-3305
-
-
Weigend, F.1
Ahlrichs, R.2
-
76
-
-
0031285839
-
RI-MP2: First derivatives and global consistency
-
Weigend, F. and Häser, M. 1997. RI-MP2: First derivatives and global consistency. Theor. Chem. Acc. 97: 331-340.
-
(1997)
Theor. Chem. Acc
, vol.97
, pp. 331-340
-
-
Weigend, F.1
Häser, M.2
-
77
-
-
0001063056
-
Reverse Watson-Crick isocytosine-cytosine and guanine-cytosine base pairs stabilized by the formation of the minor tautomers of bases. An ab initio study in the gas phase and in a water cluster
-
Zhanpeisov, N.U., Šponer, J., and Leszczynski, J. 1998. Reverse Watson-Crick isocytosine-cytosine and guanine-cytosine base pairs stabilized by the formation of the minor tautomers of bases. An ab initio study in the gas phase and in a water cluster. J. Phys. Chem. A 102: 10374-10379.
-
(1998)
J. Phys. Chem. A
, vol.102
, pp. 10374-10379
-
-
Zhanpeisov, N.U.1
Šponer, J.2
Leszczynski, J.3
|