Genetics of host susceptibility to paratuberculosis

Paratuberculosis: Organism, Disease, Control

Volumn , Issue , 2010, Pages 50-59

  Kirkpatrick, Brian W ^a  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 77957152806     PISSN: None     EISSN: None     Source Type: Book    
DOI: None     Document Type: Chapter

References (44)

1. Barrett, J.C., Hansoul, S., Nicolae, D.L., Cho, J.H., Duerr, R.H., Rioux, J.D., Brant, S.R., Silverberg, M.S., Taylor, K.D., Barmada, M.M., Bitton, A., Dassopoulos, T., Datta, L.W., Green, T., Griffiths, A.M., Kistner, E.O., Murtha, M.T., Regueiro, M.D., Rotter, J.I., Schumm, L.P., Steinhart, A.H., Targan, S.R., Xavier, R.J., NIDDK IBD Genetics Consortium, Libioulle, C., Sandor, C., Lathrop, M., Belaiche, J., Dewit, O., Gut, I., Heath, S., Laukens, D., Mni, M., Rutgeerts, P., Van Gossum, A., Zelenika, D., Franchimont, D., Hugot, J.P., de Vos, M., Vermeire, S., Louis, E., Belgian-French IBD Consortium; Wellcome Trust Case Control Consortium, Cardon, L.R., Anderson, C.A., Drummond, H., Nimmo, E., Ahmad, T., Prescott, N.J., Onnie, C.M., Fisher, S.A., Marchini, J., Ghori, J., Bumpstead, S., Gwilliam, R., Tremelling, M., Deloukas, P., Mansfield, J., Jewell, D., Satsangi, J., Mathew, C.G., Parkes, M., Georges, M. and Daly, M.J. (2008) Genomewide association defines more than 30 distinct susceptibility loci for Crohn's disease. Nature Genetics 40, 955-962.
2. Buitkamp, J., Obexer-Ruff, G., Kessler, M. and Epplen, J.T. (1996) A microsatellite (BOBT24) located between the bovine IL4 and IL13 loci is polymorphic in cattle and goat. Animal Genetics 27, 212-213.
3. Cetinkaya, B., Edrogan, H.M. and Morgan, K.L. (1997) Relationships between the presence of Johne's disease and farm and management factors in dairy cattle in England. Preventive Veterinary Medicine 32, 253-266.
4. Coussens, P.M., Coussens, M.J., Tooker, B.Ç. and Nobis, W. (2004) Structure of the bovine natural resistance associated macrophage protein (NRAMP1) gene and identification of a novel polymorphism. DNA Sequence 15, 15-25.
5. Economou, M., Trikalinos, T.A., Loizou, K.T., Tsianos, E.V. and Ioannidis, J.P.A. (2004) Differential effects of NOD2 variants on Crohn's disease risk and phenotype in diverse populations: a meta-analysis. American Journal of Gastroenterology 99, 2393-2404.
6. Elzo, M.A., Rae, D.O., Lanhart, S.E., Wasdin, J.G., Dixon, W.P. and Jones, J.L. (2006) Factors associated with ELISA scores for paratuberculosis in an Angus-Brahman multibreed herd of beef cattle. Journal of Animal Science 84, 41-48.
7. Feng, J., Li, Y., Hashad, M., Schurr, E., Gros, P., Adams, L.G. and Templeton, J.W. (1996) Bovine natural resistance associated macro-phage protein 1 (Nramp1) gene. Genome Research 6, 956-964.
8. Gonda, M.G., Chang, Y.M., Shook, G.E., Collins, M.T. and Kirkpatrick, B.W. (2006) Genetic variation of Mycobacterium avium ssp. paratuberculosis infection in US Holsteins. Journal of Dairy Science 89, 1804-1812.
9. Gonda, M.G., Kirkpatrick, B.W., Shook, G.E. and Collins, M.T. (2007) Identification of a QTL on BTA20 affecting susceptibility to Mycobacterium avium ssp. paratuberculosis infection in US Holsteins. Animal Genetics 38, 389-396.
10. Hickey, S.M., Morris, C.A., Dobbie, J.L. and Lake, D.E. (2003) Heritability of Johne's disease and survival data from Romney and Merino sheep. Proceedings of the New Zealand Society of Animal Production 63, 179-182.
11. Hindorff, L.A., Junkins, H.A., Mehta, J.P. and Manolio, T.A. (2009) A catalog of published genome-wide association studies. Available at www.genome. gov/26525384 (accessed 6 February 2009).
12. Hinger, M., Brandt, H., Horner, S. and Erhardt, G. (2007) Association analysis of microsatellites and Mycobacterium avium subspecies paratuberculosis antibody response in German Holsteins. Journal of Dairy Science 90, 1957-1961.
13. Hinger, M., Brandt, H. and Erhardt, G. (2008) Heritability estimates for antibody response to Mycobacterium avium subspecies paratuberculosis in German Holstein cattle. Journal of Dairy Science 91, 3237-3244.
14. Hugot, J.P. (2006) CARD15/NOD2 mutations in Crohn's disease. Annals of the New York Academy of Science 1072, 9-18.
15. Kim, E.-S. and Kirkpatrick, B.W. (2009) Linkage disequilibrium in the North American Holstein population. Animal Genetics 40, 279-288.
16. Koets, A.P., Adugna, G., Janss, L.L.G., van Weering, H.J., Kalis, C.H.J., Wentink, G.H., Rutten, V.P.M.G. and Schukken, Y.H. (2000) Genetic variation of susceptibility to Mycobacterium avium subsp. paratuberculosis infection in dairy cattle. Journal of Dairy Science 83, 2702-2708.
17. Lettre, G. and Rioux, J.D. (2008) Autoimmune diseases: insights from genome-wide association studies. Human Molecular Genetics 17, R116-R121.
18. Libioulle, C., Louis, E., Hansoul, S., Sandor, C., Farnir, F., Franchimont, D., Vermeire, S., Dewit, O., de Vos, M., Dixon, A., Demarche, B., Gut, I., Heath, S., Foglio, M., Liang, L., Laukens, D., Mni, M., Zelenika, D., Van Gossum, A., Rutgeerts, P., Belaiche, J., Lathrop, M. and Georges, M. (2007) Novel Crohn's disease locus identified by genome-wide association maps to a gene desert on 5p13.1 and modulates expression of PTGER4. PLoS Genetics 3, e58.
19. Malo, D., Vogan, K., Vidal, S., Hu, J., Cellier, M., Schurr, E., Fuks, A., Bumstead, N., Morgan, K. and Grost, P. (1994) Haplotype mapping and sequence analysis of the mouse Nramp gene predicts susceptibility to infection with intracellular parasites. Genomics 23, 51-61.
20. Martinez, R., Dunner, S., Barrera, G. and Cañon, J. (2008) Novel variants within the coding regions of the Slc11A1 gene identified in Bos taurus and Bos indicus breeds. Journal of Animal Breeding and Genetics 125, 57-62.
21. Mortensen, H., Nielsen, S.S. and Berg, P. (2004) Genetic variation and heritability of the antibody response to Mycobacterium avium subspecies paratuberculosis in Danish Holstein cows. Journal of Dairy Science 87, 2108-2113.
22. Mucha, R., Bhide, M.R., Chakurkar, E.B., Novak, M. and Mikula, I., Sr (2009) Toll-like receptors TLR1, TLR2 and TLR4 gene mutations and natural resistance to Mycobacterium avium subsp. paratuberculosis infection in cattle. Veterinary Immunology and Immunopathology 128, 381-388.
23. Newman, B. and Siminovitch, K.A. (2005) Recent advances in the genetics of inflammatory bowel disease. Current Opinion in Gastroenterology 21, 401-407.
24. Nielsen, S.S., Grohn, Y.T., Quaas, R.L. and Agger, J.F. (2002) Paratuberculosis in dairy cattle: variation of the antibody response in offspring attributable to the dam. Journal of Dairy Science 85, 406-412.
25. Osterstock, J.B., Fosgate, G.T., Derr, J.N., Cohen, N.D. and Roussel, A.J. (2008) Assessing familial aggregation of paratuberculosis in beef cattle of unknown pedigree. Preventive Veterinary Medicine 84, 121-134.
26. Parkes, M., Barrett, J.C., Prescott, N.J., Tremelling, M., Anderson, C.A., Fisher, S.A., Roberts, R.G., Nimmo, E.R., Cummings, F.R., Soars, D., Drummond, H., Lees, C.W., Khawaja, S.A., Bagnall, R., Burke, D.A., Todhunter, C.E., Ahmad, T., Onnie, C.M., McArdle, W., Strachan, D., Bethel, G., Bryan, C., Lewis, C.M., Deloukas, P., Forbes, A., Sanderson, J., Jewell, D.P., Satsangi, J., Mansfield, J.C., Wellcome Trust Case Control Consortium, Cardon, L. and Mathew, C.G. (2007) Sequence variants in the autophagy gene IRGM and multiple other replicating loci contribute to Crohn's disease susceptibility. Nature Genetics 39, 830-832.
27. Pence, M., Baldwin, C. and Black, C.C., 3rd (2003) The seroprevalence of Johne's disease in Georgia beef and dairy cull cattle. Journal of Veterinary Diagnostic Investigation 15, 475-477.
28. Pinedo, P.J., Buergelt, C.D., Donovan, G.A., Melendez, P., Morel, L., Wu, R., Langaee, T.Y., and Rae, D.O. (2009a) Association between CARD15/NOD2 gene polymorphisms and paratuberculosis infection in cattle. Veterinary Microbiology 134, 346-352.
29. Pinedo, P.J., Wang, C., Li, Y., Rae, D.O. and Wu, R. (2009b) Risk haplotype analysis for bovine paratuberculosis. Mammalian Genome 20, 124-129.
30. Radford-Smith, G. and Pandeya, N. (2006) Associations between NOD2/CARD15 genotype and phenotype in Crohn's disease-are we there yet? World Journal of Gastroenterology 12, 7097-7103.
31. Raelson, J.V., Little, R.D., Ruether, A., Fournier, H., Paquin, B., Van Eerdewegh, P., Bradley, W.E., Croteau, P., Nguyen-Huu, Q., Segal, J., Debrus, S., Allard, R., Rosenstiel, P., Franke, A., Jacobs, G., Nikolaus, S., Vidal, J.M., Szego, P., Laplante, N., Clark, H.F., Paulussen, R.J., Hooper, J.W., Keith, T.P., Belouchi, A. and Schreiber, S. (2007) Genome-wide association study for Crohn's disease in the Quebec Founder Population identifies multiple validated disease loci. Proceedings of the National Academy of Sciences of the USA 104, 14747-14752.
32. Reddacliff, L.A., Beh, K., McGregor, H. and Whittington, R.J. (2005) A preliminary study of possible genetic influences on the susceptibility of sheep to Johne's disease. Australian Veterinary Journal 83, 435-441.
33. Rioux, J.D., Xavier, R.J., Taylor, K.D., Silverberg, M.S., Goyette, P., Huett, A., Green, T., Kuballa, P., Barmada, M.M., Datta, L.W., Shugart, Y.Y., Griffiths, A.M., Targan, S.R., Ippoliti, A.F., Bernard, E.J., Mei, L., Nicolae, D.L., Regueiro, M., Schumm, L.P., Steinhart, A.H., Rotter, J.I., Duerr, R.H., Cho, J.H., Daly, M.J. and Brant, S.R. (2007) Genome-wide association study identifies new susceptibility loci for Crohn's disease and implicates autophagy in disease pathogenesis. Nature Genetics 39, 596-604.
34. Roupie, V., Rosseels, V., Piersoel, V., Zinniel, D.K., Barletta, R.G. and Huygen, K. (2008) Genetic resistance of mice to Mycobacterium paratuberculosis is influenced by Slc11a1 at the early but not at the late stage of infection. Infection and Immunity 76, 2099-2105.
35. Roussel, A.J., Libal, M.C., Whitlock, R.L., Hairgrove, T.B., Barling, K.S. and Thompson, J.A. (2005) Prevalence of and risk factors for paratuberculosis in purebred beef cattle. Journal of the American Veterinary Medical Association 226, 773-778.
36. Russell, R.K., Nimmo, E.R. and Satsangi, J. (2004) Molecular genetics of Crohn's disease. Current Opinion in Genetics and Development 14, 264-270.
37. Sargolzaei, M., Schenkel, F.S., Jansen, G.B. and Schaeffer, L.R. (2008) Extent of linkage disequilibrium in Holstein cattle in North America. Journal of Dairy Science 91, 2106-2117.
38. Schmidt, P., Kühn, C., Maillard, J.C., Pitra, C., Tiemann, U., Weikard, R. and Schwerin, M. (2002) A comprehensive survey for polymorphisms in the bovine IFN-gamma gene reveals a highly polymorphic intronic DNA sequence allowing improved genotyping of Bovinae. Journal of Interferon and Cytokine Research 22, 923-934.
39. Sonstegard, T.S., Garrett, W.M., Bennett, G.L., Kappes, S.M., Zarlenga, D.S. and Gasbarre, L.C. (2000) Mapping of seven bovine cytokine genes involved in T-lymphocyte growth, differentiation and immune response. Animal Genetics 31, 406-408.
40. Stone, R.T., Pulido, J.C., Duyk, G.M., Kappes, S.M., Keele, J.W. and Beattie, C.W. (1995) A smallinsert bovine genomic library highly enriched for microsatellite repeat sequences. Mammalian Genome 6, 714-724.
41. Taylor, K.H., Taylor, J.F., White, S.N. and Womack, J.E. (2006) Identification of genetic variation and putative regulatory regions in bovine CARD15. Mammalian Genome 17, 892-901.
42. Wellcome Trust Case Control Consortium (2007) Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls. Nature 447, 661-683.
43. White, S.N., Taylor, K.H., Abbey, C.A., Gill, C.A. and Womack, J.E. (2003) Haplotype variation in bovine Toll-like receptor 4 and computational prediction of a positively selected ligand-binding domain. Proceedings of the National Academy of Sciences of the USA 100, 10364-10369.
44. Zhang, H., Massey, D., Tremelling, M. and Parkes, M. (2008) Genetics of inflammatory bowel disease: clues to pathogenesis. British Medical Bulletin 87, 17-30.