Risk haplotype analysis for bovine paratuberculosis

Mammalian Genome

Volumn 20, Issue 2, 2009, Pages 124-129

  Pinedo, Pablo J ^a   Wang, Chenguang ^b   Li, Yao ^b,c   Rae, D Owen ^a   Wu, Rongling ^b,c,d  

^a University of Florida College of Veterinary Medicine   (United States)

^b Pennsylvania State College of Medicine ^*  (United States)

^c PENN STATE COLLEGE OF MEDICINE   (United States)

^d PENNSYLVANIA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CASPASE RECRUITMENT DOMAIN PROTEIN 15; GAMMA INTERFERON; TOLL LIKE RECEPTOR 4;

ALLELE; ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; BOVINE TUBERCULOSIS; CARD15 GENE; DISEASE PREDISPOSITION; GENE; GENETIC ASSOCIATION; GENETIC RISK; HAPLOTYPE; HEREDITY; IFNG GENE; INFECTION RESISTANCE; NONHUMAN; PREDICTION; SINGLE NUCLEOTIDE POLYMORPHISM; TLR4 GENE;

ANIMALS; CATTLE; CATTLE DISEASES; GENETIC PREDISPOSITION TO DISEASE; HAPLOTYPES; MYCOBACTERIUM AVIUM SUBSP. PARATUBERCULOSIS; NOD2 SIGNALING ADAPTOR PROTEIN; PARATUBERCULOSIS; POLYMORPHISM, SINGLE NUCLEOTIDE;

BOVINAE; MYCOBACTERIUM AVIUM SUBSP. PARATUBERCULOSIS;

EID: 59649127331     PISSN: 09388990     EISSN: 14321777     Source Type: Journal    
DOI: 10.1007/s00335-008-9167-0     Document Type: Article

References (37)

1. J Akey L Jin M Xiong 2001 Haplotypes vs. single marker linkage disequilibrium tests: what do we gain? Eur J Hum Genet 9 291 300
2. JS Bader 2001 The relative power of SNPs and haplotype as genetic markers for association tests Pharmacogenomics 2 11 24
3. RJ Chiodini HJ Van Kruiningen RS Merkal 1984 Ruminant paratuberculosis (Johne's disease): the current status and future prospects Cornell Vet 74 218 262
4. FS Collins MS Guyer A Charkravarti 1997 Variations on a theme: cataloging human DNA sequence variation Science 278 1580 1581
5. PM Coussens 2004 Model for immune responses to Mycobacterium avium subspecies paratuberculosis in cattle Rev Infect Immunol 72 3089 3096
6. YH Cui W Fu KL Sun R Romero R Wu 2007 Mapping nucleotide sequences that encode complex binary disease traits with HapMap Curr Genomics 8 307 322
7. G Ferwerda BJ Kullberg DJ de Jong SE Girardin DM Langenberg 2007 Mycobacterium paratuberculosis is recognized by Toll-like receptors and NOD2 J Leukoc Biol 82 1011 1018
8. T Fishbein G Novitskiy L Mishra C Matsumoto S Kaufman 2007 Nod2-expressing bone marrow-derived cells appear to regulate epithelial innate immunity of the transplanted human small intestine Gut 57 323 330
9. Gonda MG, Shook GE, Kirkpatrick BW, Collins MT (2005) Mapping quantitative trait loci affecting Mycobacterium paratuberculosis infection in cattle. Proceedings of the XIVth Plant and Animal Genome Conference, San Diego, CA, p 234 [abstract]
10. MG Gonda YM Chang GE Shook MT Collins BW Kirkpatrick 2006 Genetic variation of Mycobacterium avium ssp. paratuberculosis infection in US Holsteins J Dairy Sci 89 1804 1812
11. M Hinger H Brant S Horner G Erhardt 2007 Association analysis of microsatellites and Mycobacterium avium subspecies paratuberculosis antibody response in German Holsteins J Dairy Sci 90 1957 1961
12. S Huang W Hendriks A Althage S Hemmi H Bluethmann 1993 Immune response in mice that lack the interferon-gamma receptor Science 259 1742 1745
13. JP Hugot 2006 CARD15 mutations in Crohn's disease Ann N Y Acad Sci 1072 9 18
14. AP Koets G Adugna LL Janss HJ van Weering CH Kalis 2000 Genetic variation of susceptibility to Mycobacterium avium subsp. paratuberculosis infection in dairy cattle J Dairy Sci 83 2702 2708
15. R Judson JC Stephens A Windemuth 2000 The predictive power of haplotypes in clinical response Pharmacogenomics 1 15 26
16. PL Lakatos S Fischer L Lakatos I Gal J Papp 2006 Current concept on the pathogenesis of inflammatory bowel disease-crosstalk between genetic and microbial factors: pathogenic bacteria and altered bacterial sensing or changes in mucosal integrity take "toll"? World J Gastroenterol 12 1829 1841
17. T Langaee M Ronaghi 2005 Genetic variation analyses by pyrosequencing Mutat Res 573 96 102
18. T Liu JA Johnson J Casella R Wu 2004 Sequencing complex diseases with HapMap Genetics 168 503 511
19. S Maeda LC Hsu H Liu LA Bankston M Iimura 2005 NOD2 mutation in Crohn's disease potentiates NF-kappa B activity and IL-10 processing Science 307 734 738
20. RW Morris NL Kaplan 2002 On the advantage of haplotype analysis in the presence of multiple disease susceptibility alleles Genet Epidemiol 23 221 233
21. H Mortensen SS Nielsen P Berg 2004 Genetic variation and heritability of the antibody response to Mycobacterium avium subspecies paratuberculosis in Danish Holstein cows J Dairy Sci 87 2108 2113
22. NRC Committee on Diagnosis, Control of Johne's Disease (2003) Diagnosis and control of Johne's disease. National Research Council, Ottawa, Ontario, Canada, pp 104-120
23. Y Ogura N Inohara A Benito FF Chen S Yamaoka 2001 NOD2, a NOD1/Apaf-1 family member that is restricted to monocytes and activates NF-kappa B J Biol Chem 276 4812 4818
24. Pinedo P, Buergelt CD, Donovan GA, Melendez P, Morel L et al (2008a) Association between CARD15/NOD2 gene polymorphisms and paratuberculosis infection in cattle. Vet Microbiol (in press)
25. Pinedo PJ, Buergelt CD, Donovan GA, Melendez P, Morel L et al (2008b) Analysis of the association between three candidate genes (BoIFNG, TLR4, SLC11A1) polymorphisms and paratuberculosis infection in cattle. Vet Microbiol
26. V Quesniaux C Fremond M Jacobs S Parida D Nicolle 2004 Toll-like receptor pathways in the immune responses to mycobacteria Microbes Infect 6 946 959
27. SY Rha HC Jeung YH Choi WI Yang JH Yoo 2007 An association between RRM1 haplotype and gemcitabine-induced neutropenia in breast cancer patients Oncologist 12 622 630
28. DJ Schaid 2004 Evaluating associations of haplotypes with traits Genet Epidemiol 27 348 364
29. P Schmidt C Kuhn JC Maillard C Pitra U Tiemann 2002 A comprehensive survey for polymorphisms in the bovine IFN-gamma gene reveals a highly polymorphic intronic DNA sequence allowing improved genotyping of Bovinae J Interferon Cytokine Res 22 923 934
30. R Shtrichman CE Samuel 2001 The role of gamma interferon in antimicrobial immunity Curr Opin Microbiol 4 251 259
31. W Strober PJ Murray A Kitani T Watanabe 2006 Signalling pathways and molecular interactions of NOD1 and NOD2 Nat Rev Immunol 6 9 20
32. K Taylor J Taylor S White JE Womack 2006 Identification of genetic variation and putative regulatory regions in bovine CARD15 Mamm Genome 17 892 901
33. C Wang Y Cheng T Liu Q Li RB Fillingim 2008 A computational model for sex-specific genetic architecture of complex traits in humans: implications for mapping pain sensitivity Mol Pain 16 4 13
34. DJ Weiss CD Souza OA Evanson M Sanders M Rutherford 2007 Bovine monocyte TLR2 receptors differentially regulate the intracellular fate of Mycobacterium avium subsp. paratuberculosis and Mycobacterium avium subsp. avium J Leukoc Biol 83 48 55
35. SN White KH Taylor CA Abbey CA Gill JE Womack 2003 Haplotype variation in bovine Toll-like receptor 4 and computational prediction of a positively selected ligand-binding domain Proc Natl Acad Sci USA 100 10364 10369
36. M Yadav JS Schorey 2006 The β-glucan receptor Dectin-1 functions together with TLR2 to mediate macrophage activation by mycobacteria Blood 108 3168 3175
37. DV Zaykin PH Westfall SS Young MA Karnoub MJ Wagner 2002 Testing association of statistically inferred haplotypes with discrete and continuous traits in samples of unrelated individuals Hum Hered 53 79 91