Plasmodium falciparum Tudor Staphylococcal Nuclease interacting proteins suggest its role in nuclear as well as splicing processes

Gene

Volumn 468, Issue 1-2, 2010, Pages 48-57

  Hossain, Manzar J ^a   Korde, Reshma ^a   Singh, Prashant K ^a   Kanodia, Shivani ^a   Ranjan, Ravi ^a   Ram, Geeta ^a   Kalsey, Gaganjot Singh ^b   Singh, Rita ^b   Malhotra, Pawan ^a  

^a INTERNATIONAL CENTRE FOR GENETIC ENGINEERING AND BIOTECHNOLOGY   (Italy)

^b UNIVERSITY OF DELHI   (India)

Author keywords

Interaction; Malaria; Plasmodium falciparum; Tudor SN

Indexed keywords

DNA BINDING PROTEIN; PROTOZOAL PROTEIN; MICROCOCCAL NUCLEASE; PEPTIDE; PROTEIN BINDING;

ARTICLE; IMMUNOLOCALIZATION; MOLECULAR INTERACTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PLASMODIUM FALCIPARUM; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DOMAIN; PROTEIN FUNCTION; PROTEIN LOCALIZATION; AMINO ACID SEQUENCE; ANIMAL; CELL NUCLEUS; CHEMICAL STRUCTURE; CHEMISTRY; ENZYMOLOGY; GENE LIBRARY; GENETICS; GROWTH, DEVELOPMENT AND AGING; IMMUNOPRECIPITATION; LIFE CYCLE STAGE; METABOLISM; MOLECULAR GENETICS; PHYSIOLOGY; PROTEIN TERTIARY STRUCTURE; PROTEIN TRANSPORT; RNA SPLICING; SPLICEOSOME; TWO HYBRID SYSTEM; WESTERN BLOTTING;

AMINO ACID SEQUENCE; ANIMALS; BLOTTING, WESTERN; CELL NUCLEUS; GENE LIBRARY; IMMUNOPRECIPITATION; LIFE CYCLE STAGES; MICROCOCCAL NUCLEASE; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PEPTIDES; PLASMODIUM FALCIPARUM; PROTEIN BINDING; PROTEIN STRUCTURE, TERTIARY; PROTEIN TRANSPORT; PROTOZOAN PROTEINS; RNA SPLICING; SPLICEOSOMES; TWO-HYBRID SYSTEM TECHNIQUES;

BACTERIA (MICROORGANISMS); EUKARYOTA; PLASMODIUM (APICOMPLEXA); PLASMODIUM FALCIPARUM;

EID: 77957004259     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2010.08.004     Document Type: Article

References (44)

1. Adyshev D.M., Kolosova I.A., Verin A.D. Potential protein partners for the human TIMAP revealed by bacterial two-hybrid screening. Mol. Biol. Rep. 2006, 33:83-89.
2. Amikura R., Hanyu K., Kashikawa M., Kobayashi S. Tudor protein is essential for the localization of mitochondrial RNAs in polar granules of Drosophila embryos. Mech. Dev. 2001, 107:97-104.
3. Balu B., Shoue D.A., Fraser M.J., Adams J.H. High-efficiency transformation of Plasmodium falciparum by the lepidopteran transposable element piggy-Bac. Proc. Natl. Acad. Sci. U. S. A. 2005, 102:16391-16396.
4. Bischoff E., Vaquero C. In silico and biological survey of transcription-associated proteins implicated in the transcriptional machinery during the erythrocytic development of Plasmodium falciparum. BMC Genomics 2010, 11:34-38.
5. Buhler D., Raker V., Luhrmann R., Fischer U. Essential role of SMN in spliceosomal U snRNP assembly: implications for spinal muscular atrophy. Hum. Mol. Genet. 1999, 8:2351-2357.
6. Callebaut I., Mornon J.P. The human EBNA-2 coactivator p100: multidomain organization and relationship to the staphylococcal nuclease fold and to the tudor protein involved in Drosophila melanogaster development. Biochem. J. 1997, 321:125-132.
7. Caudy A.A., Ketting R.F., Hammond S.M., Denli A.M., Bathoorn A.M., Tops B.B., Silva J.M., Myers M.M., Hannon G.J., Plasterk R.H. A micrococcal nuclease homologue in RNAi effector complexes. Nature 2003, 425:411-414.
8. Corden J.L., Patturajan N. A CTD function linking transcription to splicing. Trends Biochem. Sci. 1997, 22:413-416.
9. Coulson R.M.R., Hall N., Ouzounis C.A. Comparative genomics of transcriptional control in human malaria parasite Plasmodium falciparum. Genome Res. 2004, 14:1548-1554.
10. Cui L., Miao J. Chromatin-mediated epigenetic regulation in the malaria parasite Plasmodium falciparum. Euk Cell. PMID: 20453074 2010.
11. Dash A.B., Orrico F.C., Ness S.A. The EVES motif mediates both intermolecular and intramolecular regulation of c-Myb. Genes Dev. 1996, 10:1858-1869.
12. Friberg A., Corsini L., Mourão A., Sattler M. Structure and ligand binding of the extended Tudor domain of D. melanogaster Tudor-SN. J. Mol. Biol. 2009, 387:921-934.
13. Gill G. SUMO and ubiquitin in the nucleus: different functions, similar mechanisms?. Genes Dev. 2004, 18:2046-2059.
14. Hall N., Karras M., Raine J.D., Carlton J.M., Kooij T.W., Berriman M., Florens L., Janssen C.S., Pain A., Christophides G.K., James K., Rutherford K., Harris B., Harris D., Churcher C., Quail M.A., Ormond D., Doggett J., Trueman H.E., Mendoza J., Bidwell S.L., Rajandream M.A., Carucci D.J., Yates J.R., Kafatos F.C., Janse C.J., Barrell B., Turner C.M., Waters A.P., Sinden R.E. A comprehensive survey of the Plasmodium life cycle by genomic, transcriptomic, and proteomic analysis. Science 2005, 307:82-86.
15. Hossain M.J., Korde R., Singh S., Mohmmed A., Dasaradhi P.V.N., Chauhan V.S., Malhotra P. Tudor domain proteins in protozoan parasites and characterization of Plasmodium falciparum Tudor Staphylococcal Nuclease. Int. J. Parasitol. 2008, 38:513-526.
16. Jirage D., Chen Y., Caridha D., O'Neil M.T., Eyase F., Witola W.H., Mamoun C.B., Waters N.C. The malarial CDK Pfmrk and its effector PfMAT1 phosphorylate DNA replication proteins and co-localize in the nucleus. Mol. Biochem. Parasitol. 2010, 172:9-18.
17. Kelley L.A., MacCallum R.M., Sternberg M.J.E. Enhanced genome annotation using structural profiles in the program 3D-PSSM. J. Mol. Biol. 2000, 299:499-520.
18. LaCount D.J., Vignali M., Chettier R., Phansalkar A., Bell R., Hesselberth J.R., Schoenfeld L.W., Ota I., Sahasrabudhe S., Kurschner C., Fields S., Hughes R.E. A protein interaction network of the malaria parasite Plasmodium falciparum. Nature 2005, 438:103-107.
19. Lanzer M., De Bruin D., Ravetch J.V. Transcription mapping of a 100kb locus of Plasmodium falciparum identifies an intergenic region in which transcription terminates and reinitiates. EMBO J. 1992, 11:1949-1955.
20. Leverson J.D., Koskinen P.J., Orrico F.C., Rainio E.M., Jalkanen K.J., Dash A.B., Eisenman R.N., Ness S.A. Pim-1 kinase and p100 cooperate to enhance c-Myb activity. Mol. Cell 1998, 2:417-425.
21. Li C.L., Yang W.Z., Chen Y.P., Yuan H.S. Structural and functional insights into human Tudor-SN, a key component linking RNA interference and editing. Nucleic Acids Res. 2008, 36:3579-3589.
22. Liu S., Jia J., Gao Y., Zhang B., Han Y. The AtTudor2, a protein with SN-Tudor domains, is involved in control of seed germination in Arabidopsis. Planta 2010, 232:197-207.
23. Low S.H., Vasanth S., Larson C.H., Mukherjee S., Sharma N., Kinter M.T., Kane M.E., Obara T., Weimbs T. Polycystin-1, STAT6, and P100 function in a pathway that transduces ciliary mechanosensation and is activated in polycystic kidney disease. Dev. Cell 2006, 10:57-69.
24. Miao J., Fan Q., Cui L., Li J., Cui L. The malaria parasite Plasmodium falciparum histones: organization, expression and acetylation. Gene 2006, 369:53-65.
25. Millhouse S., Manley J.L. The C-terminal domain of RNA polymerase II functions as a phosphorylation dependent splicing activator in a heterologous protein. Mol. Cell. Biol. 2005, 25:533-544.
26. Nourani A., Robert F., Winston F. Evidence that Spt2/Sin1, an HMG-like factor plays roles in transcription elongation, chromatin structure and genome stability in Saccharomyces cerevisiae. Mol. Cell. Biol. 2006, 26:1496-1509.
27. Paukku K., Yang J., Silvennoinen O. Tudor and nuclease-like domains containing protein p100 function as coactivators for signal transducer and activator of transcription 5. Mol. Endocrinol. 2003, 17:1805-1814.
28. Paukku K., Kalkinnen N., Silvennoinen O., Kontula K.K., Lahtonen J.Y.A. P100 increases AT1R expression through interaction with AT1R 3'-UTR. Nucleic Acid Res. 2008, 36:4474-4487.
29. Pellicena-Palle A., Salz H.K. The putative Drosophila NMDARA1 gene is located on the second chromosome and is ubiquitously expressed in embryogenesis. Biochim. Biophys. Acta 1995, 1261:301-303.
30. Pettersen E.F., Goddard T.D., Huang C.C., Couch G.S., Greenblatt D.M., Meng E.C., Ferrin T.E., et al. UCSF Chimera - a visualization system for exploratory research and analysis. J. Comput. Chem. 2004, 25:1605-1612.
31. Santos L., Frickey T., Peters J., Baumeister W., Lupas A., Zwickl P. Thermoplasma acidophilum TAA43 is an archaeal member of the eukaryotic meiotic branch of AAA ATPases. Biol. Chem. 2004, 385:1105-1111.
32. Selenko P., Sprangers R., Stier G., Buhler D., Fischer U., Sattler M. SMN tudor domain structure and its interaction with the Sm proteins. Nat. Struct. Biol. 2001, 8:27-31.
33. Shaw N., Zhao M., Cheng C., Xu H., Saarikettu J., Li Y., Da Y., Yao Z., Silvennoinen O., Yang J., Liu Z.J., Wamg B.C., Rao Z. The multifunctional human p100 protein 'hooks' methylated ligands. Nat. Struct. Mol. Biol. 2007, 14:779-784.
34. Shuai K. Modulation of STAT signaling by STAT interacting proteins. Oncogene 2000, 19:2638-2644.
35. Sunil S., Hossain M.J., Ramasamy G., Malhotra P. Transient silencing of Plasmodium falciparum Tudor Staphylococcal Nuclease suggests an essential role for the protein. Biochem. Biophys. Res. Commun. 2008, 2008:373-378.
36. Suthram S., Sittler T., Ideker T. The Plasmodium protein network diverges from those of other eukaryotes. Nature 2005, 438:108-112.
37. Tong X., Drapkin R., Yalamanchili R., Mosialos G., Kieff E. The Epstein-Barr virus nuclear protein 2 acidic domain forms a complex with a novel cellular coactivator that can interact with TFIIE. Mol. Cell. Biol. 1995, 15:4735-4744.
38. Trager W., Jensen J.B. Human malaria parasite in continuous culture. Science 1976, 193:673-675.
39. Tsuchiya N., Ochiai M., Nakashima K., Ubagai T., Sugimura T., Nakagama H. SND1, a component of RNA-induced silencing complex, is up-regulated in human colon cancers and implicated in early stage colon carcinogenesis. Cancer Res. 2007, 67:9568-9576.
40. Valineva T., Yang J., Palovuori R., Silvennoinen O. The transcriptional co-activator protein p100 recruits histone acetyltransferase activity to STAT6 and mediates interaction between the CREB-binding protein and STAT6. J. Biol. Chem. 2005, 280:14989-14996.
41. Valineva T., Yang J., Silvennoinnen Characterization of RNA helicase A as a component of STAT6 enhancement. Nucleic Acid Res. 2006, 34:3938-3946.
42. Yang J., Aittomaki S., Pesu M., Carter K., Saarinen J., Kalkkinen N., Kieff E., Silvennoinen O. Identification of p100 as a coactivator for STAT6 that bridges STAT6 with RNA polymerase II. EMBO J. 2002, 21:4950-4958.
43. Yang J., Välineva T., Hong J., Bu T., Yao Z., Jensen O.N., Frilander M.J., Silvennoinen O. Transcriptional co-activator protein p100 interacts with snRNP proteins and facilitates the assembly of the spliceosome. Nucleic Acids Res. 2007, 35:4485-4494.
44. Yang W., Chendrimada T.P., Wang Q., Higuchi M., Seeburg P.H., Shiekhattar R., Nishikura K. Modulation of microRNA processing and expression through RNA editing by ADAR deaminases. Nat. Struct. Mol. Biol. 2006, 13:13-21.