메뉴 건너뛰기




Volumn 36, Issue 11, 2008, Pages 3579-3589

Structural and functional insights into human Tudor-SN, a key component linking RNA interference and editing

Author keywords

[No Author keywords available]

Indexed keywords

CITRIC ACID; PROTEIN P100; RIBONUCLEASE; RNA;

EID: 46349107531     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkn236     Document Type: Article
Times cited : (86)

References (47)
  • 1
    • 34547587566 scopus 로고    scopus 로고
    • Antiviral immunity directed by small RNAs
    • Ding,S.-W. and Voinnet,O. (2007) Antiviral immunity directed by small RNAs. Cell, 130, 413-426.
    • (2007) Cell , vol.130 , pp. 413-426
    • Ding, S.-W.1    Voinnet, O.2
  • 2
    • 4644336023 scopus 로고    scopus 로고
    • Revealing the world of RNA interference
    • Mello,C.C. and Conte,D.J. (2004) Revealing the world of RNA interference. Nature, 431, 338-342.
    • (2004) Nature , vol.431 , pp. 338-342
    • Mello, C.C.1    Conte, D.J.2
  • 4
    • 0035153939 scopus 로고    scopus 로고
    • (200l) The p100 coactivator is present in the nuclei of mammary epithelial cells and its abundance is increased in response to prolactin in culture and in mammary tissue during lactation
    • Broadhurst,M.K. and Wheeler,T.T. (200l) The p100 coactivator is present in the nuclei of mammary epithelial cells and its abundance is increased in response to prolactin in culture and in mammary tissue during lactation. J. Endocrinol., 171, 329-337.
    • J. Endocrinol , vol.171 , pp. 329-337
    • Broadhurst, M.K.1    Wheeler, T.T.2
  • 5
    • 0038393032 scopus 로고    scopus 로고
    • Two variants of zebrafish p100 are expressed during embryogenesis and regulated by nodal signaling
    • Zhao,C.T., Shi,K.H., Liang,L.Y., Yan,Y., Postlethwait,J. and Meng,A.M. (2003) Two variants of zebrafish p100 are expressed during embryogenesis and regulated by nodal signaling. FEBS Lett., 543, 190-195.
    • (2003) FEBS Lett , vol.543 , pp. 190-195
    • Zhao, C.T.1    Shi, K.H.2    Liang, L.Y.3    Yan, Y.4    Postlethwait, J.5    Meng, A.M.6
  • 6
    • 28244498739 scopus 로고    scopus 로고
    • Structural analysis of cDNAs coding for 4SNc-Tudor domain protein from fish and their expression in yellowtail organs
    • Abe,S., Wang,P.-L., Takahashi,F. and Sasaki,E. (2005) Structural analysis of cDNAs coding for 4SNc-Tudor domain protein from fish and their expression in yellowtail organs. Marine Biotechnol., 7 677-686.
    • (2005) Marine Biotechnol , vol.7 , pp. 677-686
    • Abe, S.1    Wang, P.-L.2    Takahashi, F.3    Sasaki, E.4
  • 8
    • 35348881050 scopus 로고    scopus 로고
    • Tudor nuclease genes and programmed DNA rearrangements in Tetrahymena thermophila
    • Howard-Till,R.A. and Yao,M.-C. (2007) Tudor nuclease genes and programmed DNA rearrangements in Tetrahymena thermophila. Eukaryot. Cell, 6, 1795-1804.
    • (2007) Eukaryot. Cell , vol.6 , pp. 1795-1804
    • Howard-Till, R.A.1    Yao, M.-C.2
  • 9
    • 0029131021 scopus 로고
    • The Epstein-Barr virus nuclear protein 2 acidic domain forms a complex with a novel cellular coactivator that can interact with TFIIE
    • Tong,X., Drapkin,R., Yalamanchili,R., Mosialos,G. and Kieff,E. (1995) The Epstein-Barr virus nuclear protein 2 acidic domain forms a complex with a novel cellular coactivator that can interact with TFIIE. Mol. Cell. Biol., 15, 4735-4744.
    • (1995) Mol. Cell. Biol , vol.15 , pp. 4735-4744
    • Tong, X.1    Drapkin, R.2    Yalamanchili, R.3    Mosialos, G.4    Kieff, E.5
  • 11
    • 17644374227 scopus 로고    scopus 로고
    • The transcriptional ac-activator protein p100 recruits histone acetyltransferase activity to STAT6 and mediates interaction between the CREB-binding protein and STAT6
    • Valineva, T., Yang,J., Palovuori,R. and Silvennoinen,O. (2005) The transcriptional ac-activator protein p100 recruits histone acetyltransferase activity to STAT6 and mediates interaction between the CREB-binding protein and STAT6. J. Biol. Chem., 280, 14989-14996.
    • (2005) J. Biol. Chem , vol.280 , pp. 14989-14996
    • Valineva, T.1    Yang, J.2    Palovuori, R.3    Silvennoinen, O.4
  • 12
    • 33748556882 scopus 로고    scopus 로고
    • Characterization of RNA helicase A as component of STA T6-dependent enhancement
    • Valineva,T., Yang,J. and Sivernnoinen,O. (2006) Characterization of RNA helicase A as component of STA T6-dependent enhancement. Nucleic Acid Res., 34, 3938-3946.
    • (2006) Nucleic Acid Res , vol.34 , pp. 3938-3946
    • Valineva, T.1    Yang, J.2    Sivernnoinen, O.3
  • 13
    • 29744470060 scopus 로고    scopus 로고
    • Polycystin-1, STAT6, and p100 function in a pathway that transduces ciliary mechanosensation and it activated in polycystic kidney disease
    • Low,S.H., Vasanth,S., Larson,C.H., Mukherjee,S., Sharma,N., Kinter,M.T., Kane,M.E., Obara,T. and Weimbs,T. (2006) Polycystin-1, STAT6, and p100 function in a pathway that transduces ciliary mechanosensation and it activated in polycystic kidney disease. Develop. Cell, 10, 57-69.
    • (2006) Develop. Cell , vol.10 , pp. 57-69
    • Low, S.H.1    Vasanth, S.2    Larson, C.H.3    Mukherjee, S.4    Sharma, N.5    Kinter, M.T.6    Kane, M.E.7    Obara, T.8    Weimbs, T.9
  • 14
    • 0042835769 scopus 로고    scopus 로고
    • Tudor and nuclease-like domains containing protein p100 function as coactivators for signal transducer and activator of transcriptional 5
    • Paukku,K., Yang,J. and Silvennoinen,O. (2007) Tudor and nuclease-like domains containing protein p100 function as coactivators for signal transducer and activator of transcriptional 5. Mol. Endocrinol., 17, 1805-1814.
    • (2007) Mol. Endocrinol , vol.17 , pp. 1805-1814
    • Paukku, K.1    Yang, J.2    Silvennoinen, O.3
  • 15
    • 35148895851 scopus 로고    scopus 로고
    • SND1, a component of RNA-induced silencing complex, is up-regulated in human colon cancers and implicated in early stage colon carcinogenesis
    • Tsuchiya,N., Ochiai,M., Nakashima,K., Ubagai,T., Sugimura,T. and Nakagama,H. (2007) SND1, a component of RNA-induced silencing complex, is up-regulated in human colon cancers and implicated in early stage colon carcinogenesis. Cancer Res.; 67, 9568-9576.
    • (2007) Cancer Res , vol.67 , pp. 9568-9576
    • Tsuchiya, N.1    Ochiai, M.2    Nakashima, K.3    Ubagai, T.4    Sugimura, T.5    Nakagama, H.6
  • 16
    • 22144444302 scopus 로고    scopus 로고
    • The RISC subunit Tudor-SN binds to hyper-edited double-stranded RNA and promotes its cleavage
    • Scadden,A.D. (2005) The RISC subunit Tudor-SN binds to hyper-edited double-stranded RNA and promotes its cleavage. Nature Struct. Mol. Biol., 12, 489-496.
    • (2005) Nature Struct. Mol. Biol , vol.12 , pp. 489-496
    • Scadden, A.D.1
  • 17
    • 0035422052 scopus 로고    scopus 로고
    • Specific cleavage of hyper-edited dsRNAs
    • Scadden,A.D. and Smitb,C.W.J. (2001) Specific cleavage of hyper-edited dsRNAs. EMBO J., 20, 4243-4252.
    • (2001) EMBO J , vol.20 , pp. 4243-4252
    • Scadden, A.D.1    Smitb, C.W.J.2
  • 18
    • 34547629436 scopus 로고    scopus 로고
    • RNA editing of the microRNA-151 precusor blocks cleavage by the Dicer-TRBP complex
    • Kawahara,Y., Zinshteyn,B., Chendrimada,T.P., Shiekhattar,R. and Nishikura,K. (2007) RNA editing of the microRNA-151 precusor blocks cleavage by the Dicer-TRBP complex. EMBO Rep., 8, 763-769.
    • (2007) EMBO Rep , vol.8 , pp. 763-769
    • Kawahara, Y.1    Zinshteyn, B.2    Chendrimada, T.P.3    Shiekhattar, R.4    Nishikura, K.5
  • 19
    • 34547829272 scopus 로고    scopus 로고
    • Transcriptional co-activator protein p100 interacts with sn RNP proteins and facilitates the assembly of the spliceosome
    • Yang,J., Valineva,T., Hong,J., Bu,T., Yao,Z., Jensen,O.N., Frilander,M.J. and Silvennoinen,O. (2007) Transcriptional co-activator protein p100 interacts with sn RNP proteins and facilitates the assembly of the spliceosome. Nucleic Acid Res., 35, 4485-4494.
    • (2007) Nucleic Acid Res , vol.35 , pp. 4485-4494
    • Yang, J.1    Valineva, T.2    Hong, J.3    Bu, T.4    Yao, Z.5    Jensen, O.N.6    Frilander, M.J.7    Silvennoinen, O.8
  • 20
    • 0031027360 scopus 로고    scopus 로고
    • The human EBNA-2 coactivator p100: Multidomain orginization and relationship to the staphylococcal nuclease fold and t the tudor protein involved in Drosophila melanogaster development
    • Callebaut,I. and Mornon,J.P. (1997) The human EBNA-2 coactivator p100: multidomain orginization and relationship to the staphylococcal nuclease fold and t the tudor protein involved in Drosophila melanogaster development. Biochem. J., 321, 125-132.
    • (1997) Biochem. J , vol.321 , pp. 125-132
    • Callebaut, I.1    Mornon, J.P.2
  • 21
    • 0031055371 scopus 로고    scopus 로고
    • P100, a transcriptional coactivator, is a human homologue of staphylococcal nuclease
    • Ponting,C.P. (1997) P100, a transcriptional coactivator, is a human homologue of staphylococcal nuclease. Protein Sci., 6, 459-463.
    • (1997) Protein Sci , vol.6 , pp. 459-463
    • Ponting, C.P.1
  • 22
    • 0000261801 scopus 로고
    • Stalphylococcal nuclease: Proposed mechanism of action based on structure of enzyme-thymidine 3′,5′-bisphosphate-calcium ion complex at 1.5-Angstrom resolution
    • Cotton,F.A., Hazen,E.E.J. and Legg,M.J. (1979) Stalphylococcal nuclease: proposed mechanism of action based on structure of enzyme-thymidine 3′,5′-bisphosphate-calcium ion complex at 1.5-Angstrom resolution. Proc. Natl Acad. Sci.USA, 76, 2551-2555.
    • (1979) Proc. Natl Acad. Sci.USA , vol.76 , pp. 2551-2555
    • Cotton, F.A.1    Hazen, E.E.J.2    Legg, M.J.3
  • 24
    • 9244252580 scopus 로고    scopus 로고
    • Huyen,Y., Zgheib,O., DiTullio,R.A.J., Gorgoulis,V.G., Zacharatos,P., Petty,T.J., Sheston,E.A., Mellert,H.S., Stavridi.E.S. and Halazonetis,T.D. (2004) Methylated lysine 79 of histone H3 targets 53BP1 to DNA double-strand breaks. Nature, 432, 406-411.
    • Huyen,Y., Zgheib,O., DiTullio,R.A.J., Gorgoulis,V.G., Zacharatos,P., Petty,T.J., Sheston,E.A., Mellert,H.S., Stavridi.E.S. and Halazonetis,T.D. (2004) Methylated lysine 79 of histone H3 targets 53BP1 to DNA double-strand breaks. Nature, 432, 406-411.
  • 25
    • 23344444863 scopus 로고    scopus 로고
    • Tudor domains bind symmetrical dimethylated arginines
    • Cote,J. and Richard,S. (2005) Tudor domains bind symmetrical dimethylated arginines. J. Biol. Chem., 280, 28476-28483.
    • (2005) J. Biol. Chem , vol.280 , pp. 28476-28483
    • Cote, J.1    Richard, S.2
  • 27
    • 0042525860 scopus 로고    scopus 로고
    • DNA binding and cleavage by the periplasmic nuclease Vvn: A novel structure with a known active site
    • Li,C.L., Hor,L.I., Chang,Z.F., Tsai,L.C., Yang,W.Z. and Yuan,H.S. (2003) DNA binding and cleavage by the periplasmic nuclease Vvn: A novel structure with a known active site. EMBO J., 22, 4014-4025.
    • (2003) EMBO J , vol.22 , pp. 4014-4025
    • Li, C.L.1    Hor, L.I.2    Chang, Z.F.3    Tsai, L.C.4    Yang, W.Z.5    Yuan, H.S.6
  • 28
    • 0031059866 scopus 로고    scopus 로고
    • Processing of X-ray diffraction data collected in oscillation mode
    • Otwinowski,Z. and Minor,W. (1997) Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol., 276, 307-326.
    • (1997) Methods Enzymol , vol.276 , pp. 307-326
    • Otwinowski, Z.1    Minor, W.2
  • 30
    • 13244281317 scopus 로고    scopus 로고
    • Coot: Model-building tools for molecular graphics
    • Emsley,P. and Cowtan,K. (2004) Coot: Model-building tools for molecular graphics. Acta Crystallogr. D., 60, 2126-2132.
    • (2004) Acta Crystallogr. D , vol.60 , pp. 2126-2132
    • Emsley, P.1    Cowtan, K.2
  • 32
  • 34
    • 0034692902 scopus 로고    scopus 로고
    • Increasing the thermostability of staphylococcal nuclease: Implications for the origin of protein thermostability
    • Chen,J., Lu,Z., Sakon,J. and Stites,W.E. (2000) Increasing the thermostability of staphylococcal nuclease: Implications for the origin of protein thermostability. J. Mol. Biol., 303, 125-130.
    • (2000) J. Mol. Biol , vol.303 , pp. 125-130
    • Chen, J.1    Lu, Z.2    Sakon, J.3    Stites, W.E.4
  • 35
    • 0028337364 scopus 로고
    • Crystal structures of the binary Ca2 + and pdTp complexes and the ternary complex of the Asp21→Glu mutant of staphylococcal nuclease. Implications for catalysis and ligand binding
    • Libson,A.M., Gittis,A.G. and Lattman,E.E. (1994) Crystal structures of the binary Ca2 + and pdTp complexes and the ternary complex of the Asp21→Glu mutant of staphylococcal nuclease. Implications for catalysis and ligand binding. Biochemistry, 33, 8007-8016.
    • (1994) Biochemistry , vol.33 , pp. 8007-8016
    • Libson, A.M.1    Gittis, A.G.2    Lattman, E.E.3
  • 36
    • 0032535613 scopus 로고    scopus 로고
    • Molecular basis of double-stranded RNA- protein interactions: Structure of a dsRNA-binding domain complexed with dsRNA
    • Ryter,J.M. and Schultz,S.C. (1999) Molecular basis of double-stranded RNA- protein interactions: Structure of a dsRNA-binding domain complexed with dsRNA. EMBO J., 17, 7505-7513.
    • (1999) EMBO J , vol.17 , pp. 7505-7513
    • Ryter, J.M.1    Schultz, S.C.2
  • 37
    • 27744581854 scopus 로고    scopus 로고
    • Cleavage of dsRNAs hyper-edited by ADARs occurs at preferred editing sites
    • Scadden,A.D.J. and O'Connell,M.A. (2005) Cleavage of dsRNAs hyper-edited by ADARs occurs at preferred editing sites. Nucleic Acid Res., 33, 5954-5964.
    • (2005) Nucleic Acid Res , vol.33 , pp. 5954-5964
    • Scadden, A.D.J.1    O'Connell, M.A.2
  • 38
    • 3042693157 scopus 로고    scopus 로고
    • Pronouced instability of tandem IU base pairs in RNA
    • Serra,M.J., Smolter,P.E. and Westhof,E. (2004) Pronouced instability of tandem IU base pairs in RNA. Nucleic Acid Res., 32, 1824-1828.
    • (2004) Nucleic Acid Res , vol.32 , pp. 1824-1828
    • Serra, M.J.1    Smolter, P.E.2    Westhof, E.3
  • 39
    • 33644768174 scopus 로고    scopus 로고
    • Control of translation and mRNA degradation by miRNAs and siRNAs
    • Valencia-Sanchez,M.A., Liu,J., Hannon,G.J. and Parker,R. (2007) Control of translation and mRNA degradation by miRNAs and siRNAs. Genes Dev. 20, 515-524.
    • (2007) Genes Dev , vol.20 , pp. 515-524
    • Valencia-Sanchez, M.A.1    Liu, J.2    Hannon, G.J.3    Parker, R.4
  • 40
    • 12344300804 scopus 로고    scopus 로고
    • Widespread A-to-I RNA editing of Alu-containing mRNAs in the human transcriptosome
    • Athanasiadis,A., Rich,A. and Maas,S. (2004) Widespread A-to-I RNA editing of Alu-containing mRNAs in the human transcriptosome. PLoS Biol., 2, e391.
    • (2004) PLoS Biol , vol.2
    • Athanasiadis, A.1    Rich, A.2    Maas, S.3
  • 44
    • 33845315229 scopus 로고    scopus 로고
    • Editor meets silencer: Crosstalk between RNA editing and RNA interference
    • Nishikura,K. (2006) Editor meets silencer: Crosstalk between RNA editing and RNA interference. Nat. Rev. Mol. Cell. Biol., 7, 919-931.
    • (2006) Nat. Rev. Mol. Cell. Biol , vol.7 , pp. 919-931
    • Nishikura, K.1
  • 45
    • 0029164692 scopus 로고
    • Expression and regulation by interferon of a double-stranded-RNA-specific adenosine deaminase from human cells: Evidence for two forms of the deaminase
    • Patterson,J.B. and Samuel,C.E. (1995) Expression and regulation by interferon of a double-stranded-RNA-specific adenosine deaminase from human cells: Evidence for two forms of the deaminase. Mol. Cell. Biol., 15, 5376-5388.
    • (1995) Mol. Cell. Biol , vol.15 , pp. 5376-5388
    • Patterson, J.B.1    Samuel, C.E.2
  • 46
    • 33744476400 scopus 로고    scopus 로고
    • Is RNA interference involved in intrinsic antiviral immunity in mammals?
    • Cullen,B.R. (2006) Is RNA interference involved in intrinsic antiviral immunity in mammals? Nat. Immunol., 7, 563-567.
    • (2006) Nat. Immunol , vol.7 , pp. 563-567
    • Cullen, B.R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.