Specific replication origins promote DNA amplification in fission yeast

Journal of Cell Science

Volumn 123, Issue 18, 2010, Pages 3047-3051

  Kiang, Lee ^a   Heichinger, Christian ^a,b,d   Watt, Stephen ^c,e   Bähler, Jürg ^c,f   Nurse, Paul ^a  

^a ROCKEFELLER UNIVERSITY   (United States)

^b IMPERIAL CANCER RESEARCH FUND   (United Kingdom)

^c WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

^d Institute of Plant Biology   (Switzerland)

^e CANCER RESEARCH UK CAMBRIDGE RESEARCH INSTITUTE   (United Kingdom)

^f UNIVERSITY COLLEGE LONDON   (United Kingdom)

Author keywords

Cell cycle; DNA amplification; DNA replication; Fission yeast; Replication origin

Indexed keywords

CELL CYCLE PROTEIN 6; REPLICATION LICENSING FACTOR CDT1;

ARTICLE; CELL CYCLE S PHASE; DNA REPLICATION; GENE AMPLIFICATION; MICROARRAY ANALYSIS; NONHUMAN; PRIORITY JOURNAL; PROTEIN EXPRESSION; YEAST;

DNA REPLICATION; REPLICATION ORIGIN; S PHASE; SCHIZOSACCHAROMYCES; SCHIZOSACCHAROMYCES POMBE PROTEINS;

EUKARYOTA; SCHIZOSACCHAROMYCETACEAE;

EID: 77956933572     PISSN: 00219533     EISSN: None     Source Type: Journal    
DOI: 10.1242/jcs.067470     Document Type: Article

References (32)

1. Arentson, E., Faloon, P., Seo, J., Moon, E., Studt, J. M., Fremont, D. H. and Choi, K. (2001). Oncogenic potential of the DNA replication licensing protein CDT1. Oncogene 21, 1150-1158.
2. Arias, E. E. and Walter, J. C. (2007). Strength in numbers: preventing rereplication via multiple mechanisms in eukaryotic cells. Genes Dev. 21, 497-518.
3. Bähler, J., Wu, J.-Q., Longtine, M. S., Shah, N. G., McKenzie, A., III, Steever, A. B., Wach, A., Philippsen, P. and Pringle, J. R. (1998). Heterologous modules for efficient and versatile PCR-based gene targeting in Schizosaccharomyces pombe. Yeast 14, 943-951.
4. Bell, S. P. and Dutta, A. (2002). DNA replication in eukaryotic cells. Annu. Rev. Biochem. 71, 333.
5. Claycomb, J. M. and Orr-Weaver, T. (2005). Developmental gene amplification: insights into DNA replication and gene expression. Trends Genet. 21, 149-162. (Pubitemid 40269854)
6. Conrad, B. and Antonarakis, S. E. (2007). Gene duplication: a drive for phenotypic diversity and cause of human disease. Annu. Rev. Genomics Hum. Genet. 8, 17.
7. Dai, J., Chuang, R.-Y. and Kelly, T. J. (2005). DNA replication origins in the Schizosaccharomyces pombe genome. Proc. Natl. Acad. Sci. USA 102, 337-342.
8. de Cicco, D. V. and Spradling, A. C. (1984). Localization of a cis-acting element responsible for the developmentally regulated amplification of drosophila chorion genes. Cell 38, 45-54.
9. Dunham, M. J., Badrane, H., Ferea, T., Adams, J., Brown, P. O., Rosenzweig, F. and Botstein, D. (2002). Characteristic genome rearrangements in experimental evolution of Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 99, 16144-16149.
10. Field, Y., Kaplan, N., Fondufe-Mittendorf, Y., Moore, I. K., Sharon, E., Lubling, Y., Widom, J. and Segal, E. (2008). Distinct modes of regulation by chromatin encoded through nucleosome positioning signals. PLoS Comput. Biol. 4, e1000216.
11. Gonzalez, M. A., Tachibana, K. E., Adams, D. J., van der Weyden, L., Hemberger, M., Coleman, N., Bradley, A. and Laskey, R. A. (2006). Geminin is essential to prevent endoreduplication and to form pluripotent cells during mammalian development. Genes Dev. 20, 1880-1884.
12. Gopalakrishnan, V., Simancek, P., Houchens, C., Snaith, H. A., Frattini, M. G., Sazer, S. and Kelly, T. J. (2001). Redundant control of rereplication in fission yeast. Proc. Natl. Acad. Sci. USA 98, 13114-13119.
13. Hayashi, M., Katou, Y., Itoh, T., Tazumi, A., Yamada, Y., Takahashi, T., Nakagawa, T., Shirahige, K. and Masukata, H. (2007). Genome-wide localization of pre-RC sites and identification of replication origins in fission yeast. EMBO J. 26, 1327-1339.
14. Heichinger, C., Penkett, C. J., Bähler, J. and Nurse, P. (2006). Genome-wide characterization of fission yeast DNA replication origins. EMBO J. 25, 5171-5179. (Pubitemid 44658534)
15. Kelly, T. J., Martin, G. S., Forsburg, S. L., Stephen, R. J., Russo, A. and Nurse, P. (1993). The fission yeast cdc18+ gene product couples S phase to START and mitosis. Cell 74, 371-382.
16. Kiang, L., Heichinger, C., Watt, S., Bahler, J. and Nurse, P. (2009). Cyclin-dependent kinase inhibits reinitiation of a normal S-phase program during G2 in fission yeast. Mol. Cell. Biol. 29, 4025-4032.
17. Koszul, R., Caburet, S., Dujon, B. and Fischer, G. (2004). Eucaryotic genome evolution through the spontaneous duplication of large chromosomal segments. EMBO J. 23, 234-243.
18. Lantermann, A. B., Straub, T., Stralfors, A., Yuan, G.-C., Ekwall, K. and Korber, P. (2010). Schizosaccharomyces pombe genome-wide nucleosome mapping reveals positioning mechanisms distinct from those of Saccharomyces cerevisiae. Nat. Struct. Mol. Biol. 17, 251-257.
19. Melixetian, M., Ballabeni, A., Masiero, L., Gasparini, P., Zamponi, R., Bartek, J., Lukas, J. and Helin, K. (2004). Loss of Geminin induces rereplication in the presence of functional p53. J. Cell Biol. 165, 473-482.
20. Mickle, K., Oliva, A., Huberman, J. and Leatherwood, J. (2007). Checkpoint effects and telomere amplification during DNA re-replication in fission yeast. BMC Mol. Biol. 8, 119. (Pubitemid 351356786)
21. Mihaylov, I. S., Kondo, T., Jones, L., Ryzhikov, S., Tanaka, J., Zheng, J., Higa, L. A., Minamino, N., Cooley, L. and Zhang, H. (2002). Control of DNA replication and chromosome ploidy by geminin and cyclin A. Mol. Cell. Biol. 22, 1868-1880.
22. Moreno, S., Klar, A. and Nurse, P. (1991). Molecular genetic analysis of fission yeast Schizosaccharomyces pombe. Methods Enzymol. 194, 795-823.
23. Nishitani, H. and Nurse, P. (1995). p65cdc18 plays a major role controlling the initiation of DNA replication in fission yeast. Cell 83, 397-405.
24. Nishitani, H., Lygerou, Z., Nishimoto, T. and Nurse, P. (2000). The Cdt1 protein is required to license DNA for replication in fission yeast. Nature 404, 625-628.
25. Ohno, S. (1970). Evolution by Gene Duplication. Berlin: Springer-Verlag.
26. Schimke, R. T., Sherwood, S. W., Hill, A. B. and Johnston, R. N. (1986). Overreplication and recombination of DNA in higher eukaryotes: potential consequences and biological implications. Proc. Natl. Acad. Sci. USA 83, 2157-2161.
27. Segurado, M., de Luis, A. and Antequera, F. (2003). Genome-wide distribution of DNA replication origins at A+T islands in Schizosaccharomyces pombe. EMBO rep. 4, 1048-1053. (Pubitemid 37527422)
28. Seo, J., Chung, Y. S., Sharma, G. G., Moon, E., Burack, W. R., Pandita, T. K. and Choi, K. (2005). Cdt1 transgenic mice develop lymphoblastic lymphoma in the absence of p53. Oncogene 24, 8176-8186.
29. Sivakumar, S., Porter-Goff, M., Patel, P. K., Benoit, K. and Rhind, N. (2004). In vivo labeling of fission yeast DNA with thymidine and thymidine analogs. Methods 33, 213-219.
30. Varshavsky, A. (1981). On the possibility of metabolic control of replicon "misfiring": relationship to emergence of malignant phenotypes in mammalian cell lineages. Proc. Natl. Acad. Sci. USA 78, 3673-3677.
31. Vaziri, C., Saxena, S., Jeon, Y., Lee, C., Murata, K., Machida, Y., Wagle, N., Hwang, D. S. and Dutta, A. (2003). A p53-dependent checkpoint pathway prevents rereplication. Mol. Cell 11, 997-1008.
32. Yanow, S. K., Lygerou, Z. and Nurse, P. (2001). Expression of Cdc18/Cdc6 and Cdt1 during G2 phase induces initiation of DNA replication. EMBO J. 20, 4648-4656. (Pubitemid 32848618)