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Volumn 5, Issue 9, 2010, Pages 851-861

Engineering a direct and inducible protein-RNA interaction to regulate RNA biology

Author keywords

[No Author keywords available]

Indexed keywords

APTAMER; LIGAND RESPONSIVE PROTEIN; PROTEIN; REPRESSOR PROTEIN; TETRACYCLINE; UNCLASSIFIED DRUG;

EID: 77956926288     PISSN: 15548929     EISSN: 15548937     Source Type: Journal    
DOI: 10.1021/cb100070j     Document Type: Article
Times cited : (23)

References (51)
  • 1
    • 56749096054 scopus 로고    scopus 로고
    • Translational control of localized mRNAs: Restricting protein synthesis in space and time
    • Besse, F. and Ephrussi, A. (2008) Translational control of localized mRNAs: restricting protein synthesis in space and time Nat. Rev. Mol. Cell Biol. 9, 971-980
    • (2008) Nat. Rev. Mol. Cell Biol. , vol.9 , pp. 971-980
    • Besse, F.1    Ephrussi, A.2
  • 2
    • 34249316905 scopus 로고    scopus 로고
    • RNA-binding proteins: Modular design for efficient function
    • Lunde, B. M., Moore, C., and Varani, G. (2007) RNA-binding proteins: modular design for efficient function Nat. Rev. Mol. Cell Biol. 8, 479-490
    • (2007) Nat. Rev. Mol. Cell Biol. , vol.8 , pp. 479-490
    • Lunde, B.M.1    Moore, C.2    Varani, G.3
  • 3
    • 5044229348 scopus 로고    scopus 로고
    • Molecular mechanisms of translational control
    • Gebauer, F. and Hentze, M. W. (2004) Molecular mechanisms of translational control Nat. Rev. Mol. Cell Biol. 5, 827-835
    • (2004) Nat. Rev. Mol. Cell Biol. , vol.5 , pp. 827-835
    • Gebauer, F.1    Hentze, M.W.2
  • 4
    • 60149086205 scopus 로고    scopus 로고
    • MRNA localization: Gene expression in the spatial dimension
    • Martin, K. C. and Ephrussi, A. (2009) mRNA localization: gene expression in the spatial dimension Cell 136, 719-730
    • (2009) Cell , vol.136 , pp. 719-730
    • Martin, K.C.1    Ephrussi, A.2
  • 5
    • 32544459316 scopus 로고    scopus 로고
    • Control of mRNA stability in eukaryotes
    • Newbury, S. F. (2006) Control of mRNA stability in eukaryotes Biochem. Soc. Trans. 34, 30-34
    • (2006) Biochem. Soc. Trans. , vol.34 , pp. 30-34
    • Newbury, S.F.1
  • 7
    • 0037133312 scopus 로고    scopus 로고
    • Forced engagement of a RNA/protein complex by a chemical inducer of dimerization to modulate gene expression
    • Harvey, I., Garneau, P., and Pelletier, J. (2002) Forced engagement of a RNA/protein complex by a chemical inducer of dimerization to modulate gene expression Proc. Natl. Acad. Sci. U.S.A. 99, 1882-1887
    • (2002) Proc. Natl. Acad. Sci. U.S.A. , vol.99 , pp. 1882-1887
    • Harvey, I.1    Garneau, P.2    Pelletier, J.3
  • 8
    • 26944474465 scopus 로고    scopus 로고
    • In vitro selection of RNA aptamers against a composite small molecule-protein surface
    • Plummer, K. A., Carothers, J. M., Yoshimura, M., Szostak, J. W., and Verdine, G. L. (2005) In vitro selection of RNA aptamers against a composite small molecule-protein surface Nucleic Acids Res. 33, 5602-5610
    • (2005) Nucleic Acids Res. , vol.33 , pp. 5602-5610
    • Plummer, K.A.1    Carothers, J.M.2    Yoshimura, M.3    Szostak, J.W.4    Verdine, G.L.5
  • 9
    • 0028070676 scopus 로고
    • Proteins binding to 5 untranslated region sites: A general mechanism for translational regulation of mRNAs in human and yeast cells
    • Stripecke, R., Oliveira, C. C., McCarthy, J. E., and Hentze, M. W. (1994) Proteins binding to 5 untranslated region sites: a general mechanism for translational regulation of mRNAs in human and yeast cells Mol. Cell. Biol. 14, 5898-5909
    • (1994) Mol. Cell. Biol. , vol.14 , pp. 5898-5909
    • Stripecke, R.1    Oliveira, C.C.2    McCarthy, J.E.3    Hentze, M.W.4
  • 10
    • 0038644529 scopus 로고    scopus 로고
    • A GFP-based system to uncouple mRNA transport from translation in a single living neuron
    • Macchi, P., Hemraj, I., Goetze, B., Grunewald, B., Mallardo, M., and Kiebler, M. A. (2003) A GFP-based system to uncouple mRNA transport from translation in a single living neuron Mol. Biol. Cell 14, 1570-1582
    • (2003) Mol. Biol. Cell , vol.14 , pp. 1570-1582
    • MacChi, P.1    Hemraj, I.2    Goetze, B.3    Grunewald, B.4    Mallardo, M.5    Kiebler, M.A.6
  • 11
    • 33746361251 scopus 로고    scopus 로고
    • The role of iron regulatory proteins in mammalian iron homeostasis and disease
    • Rouault, T. A. (2006) The role of iron regulatory proteins in mammalian iron homeostasis and disease Nat. Chem. Biol. 2, 406-414
    • (2006) Nat. Chem. Biol. , vol.2 , pp. 406-414
    • Rouault, T.A.1
  • 13
    • 0026483891 scopus 로고
    • Contacts between Tet repressor and tet operator revealed by new recognition specificities of single amino acid replacement mutants
    • Baumeister, R., Helbl, V., and Hillen, W. (1992) Contacts between Tet repressor and tet operator revealed by new recognition specificities of single amino acid replacement mutants J. Mol. Biol. 226, 1257-1270
    • (1992) J. Mol. Biol. , vol.226 , pp. 1257-1270
    • Baumeister, R.1    Helbl, V.2    Hillen, W.3
  • 15
    • 0032519306 scopus 로고    scopus 로고
    • An activator/repressor dual system allows tight tetracycline-regulated gene expression in budding yeast
    • Belli, G., Gari, E., Piedrafita, L., Aldea, M., and Herrero, E. (1998) An activator/repressor dual system allows tight tetracycline-regulated gene expression in budding yeast Nucleic Acids Res. 26, 942-947
    • (1998) Nucleic Acids Res. , vol.26 , pp. 942-947
    • Belli, G.1    Gari, E.2    Piedrafita, L.3    Aldea, M.4    Herrero, E.5
  • 16
    • 0028030082 scopus 로고
    • Mechanisms underlying expression of Tn10 encoded tetracycline resistance
    • Hillen, W. and Berens, C. (1994) Mechanisms underlying expression of Tn10 encoded tetracycline resistance Annu. Rev. Microbiol. 48, 345-369
    • (1994) Annu. Rev. Microbiol. , vol.48 , pp. 345-369
    • Hillen, W.1    Berens, C.2
  • 18
    • 0034087676 scopus 로고    scopus 로고
    • Structural basis of gene regulation by the tetracycline inducible Tet repressor-operator system
    • Orth, P., Schnappinger, D., Hillen, W., Saenger, W., and Hinrichs, W. (2000) Structural basis of gene regulation by the tetracycline inducible Tet repressor-operator system Nat. Struct. Biol. 7, 215-219
    • (2000) Nat. Struct. Biol. , vol.7 , pp. 215-219
    • Orth, P.1    Schnappinger, D.2    Hillen, W.3    Saenger, W.4    Hinrichs, W.5
  • 19
    • 0025194307 scopus 로고
    • Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase
    • Tuerk, C. and Gold, L. (1990) Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase Science 249, 505-510
    • (1990) Science , vol.249 , pp. 505-510
    • Tuerk, C.1    Gold, L.2
  • 20
    • 0025074907 scopus 로고
    • In vitro selection of RNA molecules that bind specific ligands
    • Ellington, A. D. and Szostak, J. W. (1990) In vitro selection of RNA molecules that bind specific ligands Nature 346, 818-822
    • (1990) Nature , vol.346 , pp. 818-822
    • Ellington, A.D.1    Szostak, J.W.2
  • 22
    • 1342285086 scopus 로고    scopus 로고
    • Two mutations in the tetracycline repressor change the inducer anhydrotetracycline to a corepressor
    • Kamionka, A., Bogdanska-Urbaniak, J., Scholz, O., and Hillen, W. (2004) Two mutations in the tetracycline repressor change the inducer anhydrotetracycline to a corepressor Nucleic Acids Res. 32, 842-847
    • (2004) Nucleic Acids Res. , vol.32 , pp. 842-847
    • Kamionka, A.1    Bogdanska-Urbaniak, J.2    Scholz, O.3    Hillen, W.4
  • 23
    • 0033537675 scopus 로고    scopus 로고
    • Selection and characterization of an RNA decoy for transcription factor NF-kappa B
    • Lebruska, L. L. and Maher, L. J., 3rd (1999) Selection and characterization of an RNA decoy for transcription factor NF-kappa B Biochemistry 38, 3168-3174
    • (1999) Biochemistry , vol.38 , pp. 3168-3174
    • Lebruska, L.L.1    Maher III, L.J.2
  • 24
    • 2342585280 scopus 로고    scopus 로고
    • Probing TBP interactions in transcription initiation and reinitiation with RNA aptamers that act in distinct modes
    • Fan, X., Shi, H., Adelman, K., and Lis, J. T. (2004) Probing TBP interactions in transcription initiation and reinitiation with RNA aptamers that act in distinct modes Proc. Natl. Acad. Sci. U.S.A. 101, 6934-6939
    • (2004) Proc. Natl. Acad. Sci. U.S.A. , vol.101 , pp. 6934-6939
    • Fan, X.1    Shi, H.2    Adelman, K.3    Lis, J.T.4
  • 25
    • 33748755193 scopus 로고    scopus 로고
    • An RNA aptamer that interferes with the DNA binding of the HSF transcription activator
    • Zhao, X., Shi, H., Sevilimedu, A., Liachko, N., Nelson, H. C., and Lis, J. T. (2006) An RNA aptamer that interferes with the DNA binding of the HSF transcription activator Nucleic Acids Res. 34, 3755-3761
    • (2006) Nucleic Acids Res. , vol.34 , pp. 3755-3761
    • Zhao, X.1    Shi, H.2    Sevilimedu, A.3    Liachko, N.4    Nelson, H.C.5    Lis, J.T.6
  • 26
    • 0028685490 scopus 로고
    • Fitting a mixture model by expectation maximization to discover motifs in biopolymers
    • Bailey, T. L. and Elkan, C. (1994) Fitting a mixture model by expectation maximization to discover motifs in biopolymers Proc. Int. Conf. Intell. Syst. Mol. Biol. 2, 28-36
    • (1994) Proc. Int. Conf. Intell. Syst. Mol. Biol. , vol.2 , pp. 28-36
    • Bailey, T.L.1    Elkan, C.2
  • 27
    • 33747823564 scopus 로고    scopus 로고
    • MEME: Discovering and analyzing DNA and protein sequence motifs
    • Bailey, T. L., Williams, N., Misleh, C., and Li, W. W. (2006) MEME: discovering and analyzing DNA and protein sequence motifs Nucleic Acids Res. 34, W369-373
    • (2006) Nucleic Acids Res. , vol.34 , pp. 369-373
    • Bailey, T.L.1    Williams, N.2    Misleh, C.3    Li, W.W.4
  • 28
    • 0033591465 scopus 로고    scopus 로고
    • Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
    • Mathews, D. H., Sabina, J., Zuker, M., and Turner, D. H. (1999) Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure J. Mol. Biol. 288, 911-940
    • (1999) J. Mol. Biol. , vol.288 , pp. 911-940
    • Mathews, D.H.1    Sabina, J.2    Zuker, M.3    Turner, D.H.4
  • 29
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker, M. (2003) Mfold web server for nucleic acid folding and hybridization prediction Nucleic Acids Res. 31, 3406-3415
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3406-3415
    • Zuker, M.1
  • 30
    • 6044261460 scopus 로고    scopus 로고
    • Genetic screens and selections for small molecules based on a synthetic riboswitch that activates protein translation
    • Desai, S. K. and Gallivan, J. P. (2004) Genetic screens and selections for small molecules based on a synthetic riboswitch that activates protein translation J. Am. Chem. Soc. 126, 13247-13254
    • (2004) J. Am. Chem. Soc. , vol.126 , pp. 13247-13254
    • Desai, S.K.1    Gallivan, J.P.2
  • 31
    • 0021155247 scopus 로고
    • Regulation of the synthesis of ribosomes and ribosomal components
    • Nomura, M., Gourse, R., and Baughman, G. (1984) Regulation of the synthesis of ribosomes and ribosomal components Annu. Rev. Biochem. 53, 75-117
    • (1984) Annu. Rev. Biochem. , vol.53 , pp. 75-117
    • Nomura, M.1    Gourse, R.2    Baughman, G.3
  • 32
    • 0025635930 scopus 로고
    • Escherichia coli threonyl-tRNA synthetase and tRNA(Thr) modulate the binding of the ribosome to the translational initiation site of the thrS mRNA
    • Moine, H., Romby, P., Springer, M., Grunberg-Manago, M., Ebel, J. P., Ehresmann, B., and Ehresmann, C. (1990) Escherichia coli threonyl-tRNA synthetase and tRNA(Thr) modulate the binding of the ribosome to the translational initiation site of the thrS mRNA J. Mol. Biol. 216, 299-310
    • (1990) J. Mol. Biol. , vol.216 , pp. 299-310
    • Moine, H.1    Romby, P.2    Springer, M.3    Grunberg-Manago, M.4    Ebel, J.P.5    Ehresmann, B.6    Ehresmann, C.7
  • 33
    • 0034194572 scopus 로고    scopus 로고
    • Hfq (HF1) stimulates ompA mRNA decay by interfering with ribosome binding
    • Vytvytska, O., Moll, I., Kaberdin, V. R., von Gabain, A., and Blasi, U. (2000) Hfq (HF1) stimulates ompA mRNA decay by interfering with ribosome binding Genes Dev. 14, 1109-1118
    • (2000) Genes Dev. , vol.14 , pp. 1109-1118
    • Vytvytska, O.1    Moll, I.2    Kaberdin, V.R.3    Von Gabain, A.4    Blasi, U.5
  • 34
    • 20344405462 scopus 로고    scopus 로고
    • CsrA post-transcriptionally represses pgaABCD, responsible for synthesis of a biofilm polysaccharide adhesin of Escherichia coli
    • Wang, X., Dubey, A. K., Suzuki, K., Baker, C. S., Babitzke, P., and Romeo, T. (2005) CsrA post-transcriptionally represses pgaABCD, responsible for synthesis of a biofilm polysaccharide adhesin of Escherichia coli Mol. Microbiol. 56, 1648-1663
    • (2005) Mol. Microbiol. , vol.56 , pp. 1648-1663
    • Wang, X.1    Dubey, A.K.2    Suzuki, K.3    Baker, C.S.4    Babitzke, P.5    Romeo, T.6
  • 35
    • 0036665592 scopus 로고    scopus 로고
    • Optimizing aptamer activity for gene therapy applications using expression cassette SELEX
    • Martell, R. E., Nevins, J. R., and Sullenger, B. A. (2002) Optimizing aptamer activity for gene therapy applications using expression cassette SELEX Mol. Ther. 6, 30-34
    • (2002) Mol. Ther. , vol.6 , pp. 30-34
    • Martell, R.E.1    Nevins, J.R.2    Sullenger, B.A.3
  • 36
    • 0025188193 scopus 로고
    • Overexpression of TAR sequences renders cells resistant to human immunodeficiency virus replication
    • Sullenger, B. A., Gallardo, H. F., Ungers, G. E., and Gilboa, E. (1990) Overexpression of TAR sequences renders cells resistant to human immunodeficiency virus replication Cell 63, 601-608
    • (1990) Cell , vol.63 , pp. 601-608
    • Sullenger, B.A.1    Gallardo, H.F.2    Ungers, G.E.3    Gilboa, E.4
  • 37
    • 0026470178 scopus 로고
    • RNA and DNA binding zinc fingers in Xenopus TFIIIA
    • Theunissen, O., Rudt, F., Guddat, U., Mentzel, H., and Pieler, T. (1992) RNA and DNA binding zinc fingers in Xenopus TFIIIA Cell 71, 679-690
    • (1992) Cell , vol.71 , pp. 679-690
    • Theunissen, O.1    Rudt, F.2    Guddat, U.3    Mentzel, H.4    Pieler, T.5
  • 38
    • 0030059840 scopus 로고    scopus 로고
    • RNA recognition and translational regulation by a homeodomain protein
    • Dubnau, J. and Struhl, G. (1996) RNA recognition and translational regulation by a homeodomain protein Nature 379, 694-699
    • (1996) Nature , vol.379 , pp. 694-699
    • Dubnau, J.1    Struhl, G.2
  • 40
    • 27144527479 scopus 로고    scopus 로고
    • Regulation of bacterial gene expression by riboswitches
    • Winkler, W. C. and Breaker, R. R. (2005) Regulation of bacterial gene expression by riboswitches Annu. Rev. Microbiol. 59, 487-517
    • (2005) Annu. Rev. Microbiol. , vol.59 , pp. 487-517
    • Winkler, W.C.1    Breaker, R.R.2
  • 41
    • 0022515311 scopus 로고
    • Genetic definition of the translational operator of the threonine-tRNA ligase gene in Escherichia coli
    • Springer, M., Graffe, M., Butler, J. S., and Grunberg-Manago, M. (1986) Genetic definition of the translational operator of the threonine-tRNA ligase gene in Escherichia coli Proc. Natl. Acad. Sci. U.S.A. 83, 4384-4388
    • (1986) Proc. Natl. Acad. Sci. U.S.A. , vol.83 , pp. 4384-4388
    • Springer, M.1    Graffe, M.2    Butler, J.S.3    Grunberg-Manago, M.4
  • 42
    • 72949113632 scopus 로고    scopus 로고
    • Diarylpropane-1,3-dione derivatives as TetR-inducing tetracycline mimetics: Synthesis and biological investigations
    • Kormann, C., Pimenta, I., Lober, S., Wimmer, C., Lanig, H., Clark, T., Hillen, W., and Gmeiner, P. (2009) Diarylpropane-1,3-dione derivatives as TetR-inducing tetracycline mimetics: Synthesis and biological investigations ChemBioChem 10, 2924-2933
    • (2009) ChemBioChem , vol.10 , pp. 2924-2933
    • Kormann, C.1    Pimenta, I.2    Lober, S.3    Wimmer, C.4    Lanig, H.5    Clark, T.6    Hillen, W.7    Gmeiner, P.8
  • 43
    • 0026720075 scopus 로고
    • Tight control of gene expression in mammalian cells by tetracycline-responsive promoters
    • Gossen, M. and Bujard, H. (1992) Tight control of gene expression in mammalian cells by tetracycline-responsive promoters Proc. Natl. Acad. Sci. U.S.A. 89, 5547-5551
    • (1992) Proc. Natl. Acad. Sci. U.S.A. , vol.89 , pp. 5547-5551
    • Gossen, M.1    Bujard, H.2
  • 44
  • 46
    • 0038376482 scopus 로고    scopus 로고
    • Live imaging of endogenous RNA reveals a diffusion and entrapment mechanism for nanos mRNA localization in Drosophila
    • Forrest, K. M. and Gavis, E. R. (2003) Live imaging of endogenous RNA reveals a diffusion and entrapment mechanism for nanos mRNA localization in Drosophila Curr. Biol. 13, 1159-1168
    • (2003) Curr. Biol. , vol.13 , pp. 1159-1168
    • Forrest, K.M.1    Gavis, E.R.2
  • 47
    • 0034257926 scopus 로고    scopus 로고
    • CaMKIIalpha 3 untranslated region-directed mRNA translocation in living neurons: Visualization by GFP linkage
    • Rook, M. S., Lu, M., and Kosik, K. S. (2000) CaMKIIalpha 3 untranslated region-directed mRNA translocation in living neurons: visualization by GFP linkage J. Neurosci. 20, 6385-6393
    • (2000) J. Neurosci. , vol.20 , pp. 6385-6393
    • Rook, M.S.1    Lu, M.2    Kosik, K.S.3
  • 48
    • 0027991544 scopus 로고
    • In vitro transcription: Preparative RNA yields in analytical scale reactions
    • Pokrovskaya, I. D. and Gurevich, V. V. (1994) In vitro transcription: preparative RNA yields in analytical scale reactions Anal. Biochem. 220, 420-423
    • (1994) Anal. Biochem. , vol.220 , pp. 420-423
    • Pokrovskaya, I.D.1    Gurevich, V.V.2
  • 50
    • 0141682757 scopus 로고    scopus 로고
    • A microbead-based system for identifying and characterizing RNA-protein interactions by flow cytometry
    • Brodsky, A. S. and Silver, P. A. (2002) A microbead-based system for identifying and characterizing RNA-protein interactions by flow cytometry Mol. Cell. Proteomics 1, 922-929
    • (2002) Mol. Cell. Proteomics , vol.1 , pp. 922-929
    • Brodsky, A.S.1    Silver, P.A.2
  • 51
    • 26244437476 scopus 로고    scopus 로고
    • A novel binding assay to assess specificity of monoclonal antibodies
    • Warren, H. S. and Bettadapura, J. (2005) A novel binding assay to assess specificity of monoclonal antibodies J. Immunol. Methods 305, 33-38
    • (2005) J. Immunol. Methods , vol.305 , pp. 33-38
    • Warren, H.S.1    Bettadapura, J.2


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