Chapter 6 Comparative molecular biology of visual pigments

Handbook of Biological Physics

Volumn 3, Issue C, 2000, Pages 257-296

  Yokoyama, S ^a   Yokoyama, R ^b  

^a SYRACUSE UNIVERSITY   (United States)

^b STATE UNIVERSITY OF NEW YORK   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 77956741303     PISSN: 13838121     EISSN: None     Source Type: Book Series    
DOI: 10.1016/S1383-8121(00)80009-3     Document Type: Article

References (199)

1. Cott H.B. Adaptive Coloration in Animals (1940), Methuen, London
2. Wickler W. Mimicry in Plants and Animals (1968), McGraw-Hill, New York
3. Hinton H.E. In: Gregory R.L., and Gombrich E.H. (Eds). Illusion in Nature and Art (1973), Duckworth, London 6-159
4. Ferrari M. Colors for Survival: Mimicry and Camouflage in Nature (1993), Thomasson-Grant, Charlottesville, VA
5. Fogden M., and Fogden P. Animals and their Colors (1974), Crown, New York
6. Yokoyama S., and Yokoyama R. Israel J. Chem. 35 (1996) 325-337
7. Strader C.D., Fong T.M., Tota M.R., and Underwood D. Ann. Rev. Biochem. 63 (1994) 101-132
8. Yokoyama S., and Starmer W.T. In: Jackson M., Strachan T., and Dover G. (Eds). Human Genome Evolution (1996), BIOS Scientific, Oxford 93-119
9. Wald G. J. Gen. Physiol. 19 (1935) 351-371
10. Wald G. Am. J. Ophthalmol. 40 (1955) 18-41
11. Bridges C.D.B. In: Dartnall H.J.A. (Ed). Handbook of Sensory Physiology VII/I (1972), Springer, Berlin 417-480
12. Harosi F.I. Vision Res. 34 (1994) 1359-1369
13. Whitmore A.V., and Bowmaker J.K. J. Comp. Physiol. A 166 (1989) 103-115
14. Vogt K., and Kirschfeld K. Naturwissenschaften 71 (1984) 211-212
15. Rao V.R., and Oprian D.D. Annu. Rev. Biophys. Biomol. Struct. 25 (1996) 287-314
16. Hargrave P.A., McDowell J.H., Curtis D.R., Wang J.K., Jaszczack E., Fong S.L., Rao J.K.M., and Argos P. Biophys. Struct. Mech. 9 (1983) 235-244
17. Baldwin J.M. Curr. Opn. Cell Biol. 6 (1994) 180-190
18. Schertler G.F.X., Villa C., and Henderson R. Nature 362 (1993) 770-772
19. Unger V.M., and Schertler G.F.X. Biophys. J. 68 (1995) 1776-1786
20. Unger V.M., Hargrave P.A., Baldwin J.M., and Schertler G.F.X. Nature 389 (1997) 203-206
21. Wang J.K., McDowell H., and Hargrave P.A. Biochemistry 19 (1980) 5111-5117
22. Fukuda M.N., Papermaster D.S., and Hargrave P.A. J. Biol. Chem. 254 (1979) 8201-8207
23. Ovchinnikov Y.A., Abdulaev N.G., and Bogachuk A.S. FEBS Lett. 230 (1988) 1-5
24. Karnik S.S., Sakmar T.P., Chen H.-B., and Khorana H.G. Proc. Natl. Acad. Sci. USA 85 (1988) 8459-8463
25. Weitz C.J., and Nathans J. Biochemistry 32 (1993) 14176-14182
26. Davidson F.F., Loewen P.C., and Khorana H.G. Proc. Natl. Acad. Sci. USA 91 (1994) 4029-4033
27. Sakmar T.P., Franke R.R., and Khorana H.G. Proc. Natl. Acad. Sci. USA 86 (1989) 8309-8313
28. Zhukovsky E.A., and Oprian D.D. Science 246 (1989) 928-930
29. Nathans J. Biochemistry 29 (1990) 9746-9752
30. Franke R.R., Konig B., Sakmar T.P., Khorana H.G., and Hoffman K.P. Science 250 (1990) 123-125
31. Cohen G.B., Yang T., Robinson P.R., and Oprian D.D. Biochemistry 32 (1993) 6111-6115
32. Fahmy K., and Sakmar T.P. Biochemistry 32 (1993) 7229-7236
33. Nakayama T.A., and Khorana H.G. J. Biol. Chem. 266 (1991) 4269-4275
34. Weitz C.J., and Nathans J. Neuron 8 (1992) 465-472
35. Karnik S.S., Ridge K.D., Battacharya S., and Khorana H.G. Proc. Natl. Acad. Sci. USA 90 (1993) 40-44
36. Ohguro H., Palczewski K., Ericsson L.H., Walsh K.A., and Johnson R.S. Biochemistry 32 (1993) 5718-5724
37. Palczewski K., Buczylko J., Kaplan M.W., Polans A.S., and Crabb J.W. J. Biol. Chem. 266 (1991) 12949-12955
38. Shi W., Osawa S., Dickerson C.D., and Weiss E.R. J. Biol. Chem. 270 (1995) 2112-2119
39. Thurmond R.L., Czeuzenet C., Reeves P.J., and Khorana H.G. Proc. Natl. Acad. Sci. USA 94 (1997) 1715-1720
40. Resek J.F., Farahbakhsh Z.T., Hubbell W.L., and Khorana H.G. Biochemistry 32 (1993) 12025-12032
41. Farrens D.L., Altenbach C., Yang K., Hubbell W.L., and Khorana H.G. Science 274 (1996) 768-770
42. Yang K., Farrens D.L., Altenbach C., Farahbakhshy Z.T., Hubbell W.L., and Khorana H.G. Biochemistry 35 (1996) 14040-14046
43. Cai K., Langen R., Hubbell W.L., and Khorana H.G. Proc. Natl. Acad. Sci. USA 94 (1997) 14267-14272
44. Liu X., Garriga P., and Khorana H.G. Proc. Natl. Acad. Sci. USA 93 (1996) 4554-4559
45. Hwa J., Garriga P., Liu X., and Khorana H.G. Proc. Natl. Acad. Sci. USA 94 (1997) 10571-10576
46. Nathans J., Thomas D., and Hogness D.S. Science 232 (1986) 193-201
47. Deeb S.S., Lindsey D.T., Sanocki E., Winderickx J., Teller D.Y., and Motulsky A.G. Am. J. Hum. Genet. 51 (1992) 687-700
48. Neitz J., Neitz M., and Kainz P.M. Science 274 (1996) 801-803
49. Sun C.-H., Schneider B.G., Agarwal N., Papermaster D.S., and Nathans J. Proc. Natl. Acad. Sci. USA 88 (1991) 8840-8844
50. Sun C.-H., Davenport C.M., and Nathans J. J. Biol. Chem. 268 (1993) 26645-26649
51. Kaushal S., and Khorana H.G. Biochemistry 33 (1994) 6121-6128
52. Garriga P., Liu X., and Khorana H.G. Proc. Natl. Acad. Sci. USA 93 (1996) 4560-4564
53. Yokoyama S. Annu. Rev. Genet. 31 (1997) 315-336
54. Nathans J. Biochemistry 29 (1990) 937-942
55. Chan T., Lee M., and Sakmar T.P. J. Biol. Chem. 267 (1992) 9478-9480
56. Oprian D.D., Asenjo A.B., Lee N., and Pelletier S.L. Biochemistry 30 (1991) 11367-11372
57. Yokoyama R., Knox B.E., and Yokoyama S. Invest. Ophthalmol. Vis. Sci. 36 (1995) 939-945
58. Sun C., Macke J.P., and Nathans J. Proc. Natl. Acad. Sci. USA 94 (1997) 8860-8865
59. Fasick J.I., and Robinson P.R. Biochemistry 37 (1998) 432-438
60. Yokoyama S. Mol. Biol. Evol. 12 (1995) 53-61
61. Asenjo A.B., Rim J., and Oprian D.D. Neuron 12 (1994) 1131-1138
62. Merbs S.L., and Nathans J. Nature 356 (1992) 433-435
63. Merbs S.L., and Nathans J. Science 258 (1992) 464-466
64. Yokoyama S. Mol. Biol. Evol. 11 (1994) 32-39
65. Rosenfeld P.J., and Dryja T.P. In: Wiggis J.L. (Ed). Molecular Genetics of Ocular Disease (1995), Wiley-Lis, New York 99-126
66. Matthews K.G., Hubbard R., Brown P.K., and Wald G. J. Gen. Physiol. 47 (1963) 215-240
67. Inglese J., Freedman N.J., Koch W.J., and Lefkowitz R.J. J. Biol. Chem. 268 (1993) 23735-23738
68. Ohguro H., Johnson R.S., Ericsson L.H., Walsh K.A., and Palczewski K. Biochemistry 33 (1994) 1023-1028
69. Palczewski K., and Benovic J.L. Trends Biochem. Sci. 16 (1991) 387-391
70. Palczewski K., Rispoli G., and Detwiler P.B. Neuron 8 (1992) 117-126
71. Schleicher A., Kuhn H., and Hofmann K.P. Biochemistry 28 (1989) 1770-1775
72. Wilden U., Hall S.W., and Kuhn H. Proc. Natl. Acad. Sci. USA 83 (1986) 1174-1178
73. Nathans J. Annu. Rev. Neurosci. 10 (1987) 163-194
74. Nathans J., Piantanida T.P., Eddy T., Shows T.B., and Hogness D.S. Science 232 (1986) 203-210
75. Yau K.-W. Invest. Ophthal. Vis. Sci. 35 (1994) 9-32
76. Crescitelli F. In: Dartnall H.J.A. (Ed). Handbook of Sensory Physiology VII/1 (1972), Springer, Berlin 245-363
77. Locket N.A. In: Crescitelli F. (Ed). Handbook of Sensory Physiology VII/5 (1977), Springer, Berlin 67-192
78. Besharse J.C., Iuvone P.M., and Pierce M.E. Prog. Retinal Res. 7 (1988) 21-61
79. Lythgoe J.N. Vision Res. 24 (1984) 1539-1550
80. Partridge J.C., Shand J., Archer S.N., Lythgoe J.N., and van Groningen-Luyben W.A.H.M. J. Comp. Physiol. A 164 (1989) 513-529
81. Bowmaker J.K., Govardovskii V.I., Shukolyukov S.A., Zueva L., Hunt D.M., Sideleva V.G., and Smirnova O.G. Vision Res. 34 (1994) 591-606
82. Lythgoe J.N. The Ecology of Vision (1979), Clarendon Press, Oxford
83. Bowmaker J.K., and Knowles A. Vision Res. 17 (1977) 755-764
84. Nathans J., and Hogness D.S. Cell 34 (1983) 807-814
85. Fitzgibbon J., Hope A., Slobodyanyuk S.J., Bellingham J., Bowmaker J.K., and Hunt D.M. Gene 164 (1995) 273-277
86. Max M., McKinnon P.J., Seidenman K.J., Barrett R.K., Applebury M.L., Takahashi J.S., and Margolskee R.F. Science 267 (1995) 1502-1506
87. Kawamura S., and Yokoyama S. Gene 182 (1996) 213-214
88. Kawamura S., and Yokoyama S. Vision Res. 37 (1997) 1867-1871
89. Zhang H., and Yokoyama S. Gene 191 (1997) 1-6
90. Okano T., Kojima D., Fukada Y., Schichida Y., and Yoshizawa T. Proc. Natl. Acad. Sci. USA 89 (1992) 5932-5936
91. Yokoyama S. Genes Cells 1 (1996) 787-794
92. Ohno S. Evolution by Gene Duplication (1970), Springer, Berlin
93. Foster R.G., Garcia-Fernandez J.M., Provencio I., and DeGrip W.J. J. Comp. Physiol. A 172 (1993) 33-45
94. Groenendijk G.W.T., Jansen P.A.A., Bonting S.L., and Daemen F.J.M. Enzymol. 7 (1980) 203-220
95. Johnson R.L., Grant K.B., Zankel T.C., Boehm M.F., Merbs S.L., Nathans J., and Nakanishi K. Biochemistry 32 (1993) 208-214
96. Wang S.Z., Adler R., and Nathans J. Biochemistry 31 (1992) 3309-3315
97. Kawamura S., and Yokoyama S. Vision Res. 38 (1998) 37-44
98. Kawamura S., and Yokoyama S. Gene 149 (1994) 267-270
99. Doi T., Molday R.S., and Khorana H.G. Proc. Natl. Acad. Sci. USA 87 (1990) 4991-4995
100. Phillips W.J., and Cerione R.A. J. Biol. Chem. 267 (1992) 17032-17039
101. Kleinschmidt J., and Harosi J. Proc. Natl. Acad. Sci. USA 89 (1992) 9181-9185
102. Jacobs G.H. Am. Zool. 342 (1992) 544-554
103. Burkhardt D. J. Comp. Physiol. A 164 (1989) 787-796
104. Harosi F.I. In: Fein A., and Levine J.S. (Eds). The Visual System (1985), Liss, New York 41-55
105. Fleishman L.J., Loew E.R., and Leal M. Nature 365 (1993) 397
106. Robinson J., Schmitt E.A., Harosi F.I., Reece R.J., and Dowling J.E. Proc. Natl. Acad. Sci. USA 90 (1993) 6009-6012
107. Hisatomi O., Satoh T., Barthel L.K., Stenkamp D.L., Raymond P., and Tokunaga F. Vision Res. 36 (1996) 933-939
108. Raymond P.A., Barthel L.K., and Stenkamp D.L. Invest. Ophthalmol. Vis. Sci. 37 (1996) 948-950
109. Schmitt E.A., Fadool J.M., and Dowling J.E. Invest. Ophthalmol. Vis. Sci. 37 (1996) 695
110. Yokoyama S., Radlwimmer F.B., and Kawamura S. FEBS Lett. 423 (1998) 155-158
111. Koller L.R. Ultraviolet Radiation (1965), Wileys, New York
112. Register E.A., Yokoyama R., and Yokoyama S. J. Mol. Evol. 39 (1994) 268-273
113. Aschoff J. Handbook of Behavioral Neurobiology. Vol. 4. Biological Rhythms (1981), Plenum, New York
114. Takahashi J.S., Murakami N., Nikaido S.S., Pratt B.L., and Robertson L.M. Rec. Prog. Horm. Res. 45 (1989) 279-352
115. Meijer J.H., and Rietveld W.J. Physiol. Rev. 69 (1989) 671-707
116. Cahill G.M., Grace M.S., and Besharse J.C. Cell Mol. Neurobiol. 11 (1991) 529-560
117. Tosini G., and Menaker M. Science 272 (1996) 419-421
118. Dunlap J. Ann. Rev. Genet. 30 (1996) 579-601
119. Yokoyama S., and Zhang H. Gene 202 (1997) 89-93
120. Okano T., Yoshizawa T., and Fukada Y. Nature 372 (1994) 94-97
121. Solessio E., and Engbreston G.A. Nature 364 (1993) 442-445
122. Kito Y., Suzuki T., Azuma M., and Sekoguchi Y. Nature 218 (1968) 955-957
123. Kropf A., and Hubbard R. Ann. NY Acad. Sci. 74 (1958) 266-280
124. Honig B., Dinur U., Nakanishi K., Balogh-Nair V., Gawinowicz M.A., Arnaboldi M., and Motto M.G. J. Am. Chem. Soc. 101 (1979) 7084-7086
125. Lin S.W., Sakmar T.P., Franke R.R., Khorana H.G., and Matthies R.A. Biochemistry 31 (1992) 5101-5111
126. Nei M., Zhang J., and Yokoyama S. Mol. Biol. Evol. 14 (1997) 611-618
127. Yokoyama R., and Yokoyama S. Proc. Natl. Acad. Sci. USA 87 (1990) 9315-9318
128. Neitz M., Neitz J., and Jacobs G.H. Science 252 (1991) 971-974
129. Baldwin J.M. EMBO J. 12 (1993) 1693-1703
130. Beppu Y., and Kakitani T.K. Photochem. Photobiol. 59 (1994) 66-69
131. Bowmaker J.K. In: Cronly-Dillon J.R., and Gregory R.L. (Eds). Evolution of the Eye and Visual Pigments (1991), CRC Press, Boca Raton, Florida 63-81
132. Jacobs G.H. Comparative Color Vision (1981), Academic Press, New York
133. Jacobs G.H. Biol. Rev. 68 (1993) 413-471
134. Mollon J. In: Cronly-Dillon J.R., and Gregory R.L. (Eds). Evolution of the Eye and Visual Pigments (1991), CRC Press, Boca Raton, Florida 306-319
135. Yokoyama R., and Yokoyama S. Vision Res. 30 (1990) 807-816
136. Yokoyama S., and Radlwimmer F.B. Mol. Biol. Evol. 15 (1998) 560-567
137. Jacobs G.H., Neitz M., Deegan J.F., and Neitz J. Nature 382 (1996) 156-158
138. Windericks J., Lindsey D.T., Sanocki E., Teller D.Y., Motulsky A.G., and Deeb S.S. Nature 356 (1992) 431-433
139. Shyue S.-K., Hewitt-Emmert D., Sperling H.G., Hunt D.M., Bowmaker J.K., Mollon J.D., and Li W.-H. Science 269 (1995) 1265-1267
140. Drummond-Borg M., Deeb S.S., and Motulsky A.G. Proc. Natl. Acad Sci. USA 86 (1989) 983-987
141. Jorgensen A.L., Deeb S.S., and Motulsky A.G. Proc. Natl. Acad. Sci. USA 87 (1990) 6512-6516
142. Neitz J., Neitz M., and Jacobs G.H. Nature 342 (1989) 679-682
143. Neitz M., Neitz J., and Grishok A. Vision Res. 35 (1995) 2395-2407
144. Neitz M., and Neitz J. Science 267 (1995) 1013-1016
145. Bowmaker J.K., Jacobs G.H., and Mollon J.D. Proc. Roy. Soc. Lond. B 231 (1987) 382-390
146. Heckenlively J.R. Retinitis Pigmentosa (1988), Lippincott, Philadelphia
147. Berson E.L. Proc. Natl. Acad. Sci. USA 93 (1996) 4526-4528
148. Shastry B.S. Cell. Mol. Life Sci. 53 (1997) 419-429
149. Bok D. Invest. Ophthalmol. Vis. Sci. 29 (1985) 494-498
150. Lythgoe J.N. In: Dartnall H.J.A. (Ed). Handbook of Sensory Physiology VII 1 (1972), Springer, Berlin 566-603
151. Nathans J., and Hogness D.S. Proc. Natl. Acad. Sci. USA 81 (1984) 4851-4855
152. Applebury M.L. Nature 343 (1990) 316-317
153. Kaushal S.K., Ridge K.D., and Khorana H.G. Proc. Natl. Acad. Sci. USA 91 (1994) 4024-4028
154. Franke R.R., Sakmar T.P., Graham R.M., and Khorana H.G. J. Biol. Chem. 267 (1992) 14767-14774
155. Kim J.-M., Altenbach C., Thurmond R.L., Khorana H.G., and Hubbell W.L. Proc. Natl. Acad. Sci. USA 94 (1997) 14273-14278
156. Yang K., Farrens D.L., Hubbell W.L., and Khorana H.G. Biochemistry 35 (1996) 12464-12469
157. Hisatomi O., Iwasa T., Tokunaga F., and Yasui A. Biochem. Biophys. Res. Commu. 174 (1991) 1125-1132
158. Harosi F.I., and Kleinschmidt J. Vis. Neurosci. 10 (1993) 711-715
159. Cornwall M.C., Ripps H., Chappell R.L., and Jones G.J. J. Gen. Physiol. 94 (1989) 633-647
160. Archer S.N., Hope A.J., and Partridge J.C. Proc. R. Soc. Lond. B 262 (1996) 289-295
161. Archer S.N., and Hirano J. Proc. R. Soc. Lond. B 263 (1996) 761-777
162. Crescitelli F., and Dartnall H.J.A. J. Physiol. 125 (1954) 607-627
163. Dartnall H.J.A., and Lythgoe J.N. Vision. Res. 5 (1965) 81-100
164. Archer S.N., Lythgoe J.N., and Hall L. Proc. R. Soc. Lond. B 248 (1992) 19-25
165. Schwanzara S.A. Vision Res. 7 (1967) 121-148
166. Archer S.N., and Hirano J. J. Fish Biol. 51 (1997) 215-219
167. Chen N., Ma J.-X., Corson D.W., Hazard E.S., and Crouch R.K. Invest. Ophthalmol. Vis. Sci. 37 (1996) 1907-1913
168. Batni S., Scalzetti L., Moody S.A., and Knox B.E. J. Biol. Chem. 271 (1996) 3179-3186
169. Pitller S.J., Fliesler S.J., and Baehr W. FEBS Lett. 313 (1992) 103-108
170. Kayada S., Hisatomi O., and Tokunaga F. Comp. Biochem. Physiol. 110B (1995) 599-604
171. Crescitelli F. J. Gen. Physiol. 40 (1956) 217-231
172. Oprian D.D., Molday R.S., Kaufman R.J., and Khorana H.G. Proc. Natl. Acad. Sci. USA 84 (1987) 8874-8878
173. Jacobs G.H., Deegan J.F., Crognale M.A., and Fenwick J.A. Vis. Neurosci. 10 (1993) 173-180
174. Bridges C.D.B. Nature 184 (1959) 1727-1728
175. Crescitelli F., and Dartnall H.J.A. Nature 172 (1953) 195-196
176. Bowmaker J.K., Dartnall H.J., and Mollon J.D. J. Physiol. 298 (1980) 131-143
177. Kojima D., Okano T., Fukada Y., Shichida Y., Yoshizawa T., and Ebrey T.G. Proc. Natl. Acad. Sci. USA 89 (1992) 6841-6845
178. Starace D.M., and Knox B.E. J. Biol. Chem. 272 (1997) 1095-1100
179. Travis D.S., Bowmaker J.K., and Mollon J.D. Vision Res. 28 (1988) 481-490
180. Besharse J.C., and Witkovsky P. Vis. Neurosci. 8 (1992) 243-249
181. Radlwimmer F.B., and Yokoyama S. Gene 198 (1997) 211-215
182. Radlwimmer F.B., and Yokoyama S. Gene 218 (1998) 103-109
183. Pu G.A., and Dowling J.E. J. Neurophysiol. 46 (1981) 1018-1038
184. O'Tousa J.E., Baehr W., Martin R.L., Hirsh J., Pak W.L., and Applebury M.L. Cell 40 (1985) 839-850
185. Zuker C.S., Cowman A.F., and Rubin G.M. Cell 40 (1985) 851-858
186. Carulli J.P., Chen D.-M., Stark W.S., and Hartl D. J. Mol. Evol. 38 (1994) 250-262
187. Stavenga D.G., Zantema A., and Kuiper J.W. In: Langer H. (Ed). Biochemistry and Physiology of Visual Pigments (1973), Springer, Berlin 175-180
188. Cowman A., Zuker C.S., and Rubin G.M. Cell 44 (1986) 705-710
189. Pollock J.A., and Benzer S. Nature 333 (1988) 779-782
190. Cronin T.W., and Goldsmith T.H. Photochem. Photobiol. 36 (1982) 447-554
191. Smith W.C., Price D.A., Greenberg R.M., and Battelle B.-A. Proc. Natl. Acad. Sci. USA 90 (1993) 6150-6154
192. Townson S.M., Chang B.S., Salcedo E., Chadwell L.V., and Britt S.G. J. Neurosci. 18 (1998) 2412-2422
193. Sakamoto K., Hisatomi O., Tokunaga F., and Eguchi E. J. Exp. Biol. 199 (1996) 441-450
194. Zuker C.S., Montell C., Jones K., Laverty T., and Rubin G.M. J. Neurosci. 7 (1987) 1550-1557
195. Feiler R., Bjornson R., Kirschfeld K., Mismer D., Rubin G.M., Smith D.P., Socolich M., and Zuker C.S. J. Neurosci. 12 (1992) 3862-3868
196. Fryxell K.J., and Meyerowitz E.M. EMBO J. 6 (1987) 443-451
197. Montell C., Jones K., Zuker C., and Rubin G. J. Neurosci. 7 (1987) 1558-1566
198. Hara T., and Hara R. In: Dartnall H.J.A. (Ed). Handbook of Sensory Physiology Vol. VII/1 (1972), Springer, Berlin 720-746
199. Naito T., Nashima-Hayama K., Ohtsu K., and Kito Y. Vision Res. 21 (1981) 935-941