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Volumn 17, Issue 5, 1999, Pages 480-486

Target site selection for an RNA-cleaving catalytic DNA

Author keywords

Deoxyribozyme; DNAzyme; Oligonucleotide; RNA accessibility; Secondary structure

Indexed keywords

DEOXYRIBOZYME; DNA; ENZYME; OLIGONUCLEOTIDE; UNCLASSIFIED DRUG;

EID: 0032912701     PISSN: 10870156     EISSN: None     Source Type: Journal    
DOI: 10.1038/8658     Document Type: Article
Times cited : (139)

References (20)
  • 1
    • 0030898510 scopus 로고    scopus 로고
    • A general purpose RNA-cleaving DNA enzyme
    • Santoro, S.W. & Joyce, G.F. A general purpose RNA-cleaving DNA enzyme. Proc. Natl. Acad. Sci. USA 94, 4262-4266 (1997).
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 4262-4266
    • Santoro, S.W.1    Joyce, G.F.2
  • 2
    • 0030902471 scopus 로고    scopus 로고
    • Selecting effective antisense reagents on combinatorial oligonucleotide arrays
    • Milner, N., Mir, K.U. & Southern, E.M. Selecting effective antisense reagents on combinatorial oligonucleotide arrays. Nat. Biotechnol. 15, 537-541 (1997).
    • (1997) Nat. Biotechnol. , vol.15 , pp. 537-541
    • Milner, N.1    Mir, K.U.2    Southern, E.M.3
  • 3
    • 0031032603 scopus 로고    scopus 로고
    • Combinatorial screening and rational optimization for hybridization to folded hepatitis C virus RNA of oligonucleotides with biological antisense activity
    • Lima, W.F., Brown-Driver, V., Fox, M., Hanecak, R. & Bruice, T.W. Combinatorial screening and rational optimization for hybridization to folded hepatitis C virus RNA of oligonucleotides with biological antisense activity. J. Biol. Chem. 272, 626-638 (1997).
    • (1997) J. Biol. Chem. , vol.272 , pp. 626-638
    • Lima, W.F.1    Brown-Driver, V.2    Fox, M.3    Hanecak, R.4    Bruice, T.W.5
  • 4
    • 0030952735 scopus 로고    scopus 로고
    • Probing accessible sites for ribozymes on human acetylcholinesterase RNA
    • Birikh, K.R., Berlin, Y.A, Soreq, H. & Eckstein, F. Probing accessible sites for ribozymes on human acetylcholinesterase RNA. RNA 3, 429-437 (1997).
    • (1997) RNA , vol.3 , pp. 429-437
    • Birikh, K.R.1    Berlin, Y.A.2    Soreq, H.3    Eckstein, F.4
  • 5
    • 0029938209 scopus 로고    scopus 로고
    • Potent antisense oligonucleotides to the human multidrug resistance-1 mRNA are rationally selected by mapping RNA-accessible sites with oligonucleotide libraries
    • Ho, S.P. et al. Potent antisense oligonucleotides to the human multidrug resistance-1 mRNA are rationally selected by mapping RNA-accessible sites with oligonucleotide libraries. Nucleic Acids Res. 24, 1901-1907 (1996).
    • (1996) Nucleic Acids Res. , vol.24 , pp. 1901-1907
    • Ho, S.P.1
  • 6
    • 0003038882 scopus 로고    scopus 로고
    • Mapping of RNA accessible sites for antisense experiments with oligonucleotide libraries
    • Ho, S.P. et al. Mapping of RNA accessible sites for antisense experiments with oligonucleotide libraries. Nat. Biotechnol. 16, 59-63 (1998).
    • (1998) Nat. Biotechnol. , vol.16 , pp. 59-63
    • Ho, S.P.1
  • 7
    • 0031574209 scopus 로고    scopus 로고
    • A rapid in vitro method for obtaining RNA accessibility patterns for complementary DNA probes: Correlation with an intracellular pattern and known RNA structures
    • Matveeva, O., Felden, B., Audlin, S., Gesteland, R.F. & Atkins, J.F. A rapid in vitro method for obtaining RNA accessibility patterns for complementary DNA probes: correlation with an intracellular pattern and known RNA structures. Nucleic Acids Res. 25, 5010-5016 (1997).
    • (1997) Nucleic Acids Res. , vol.25 , pp. 5010-5016
    • Matveeva, O.1    Felden, B.2    Audlin, S.3    Gesteland, R.F.4    Atkins, J.F.5
  • 8
    • 0028943217 scopus 로고
    • Selection of efficient cleavage sites in target RNAs by using a ribozyme expression library
    • Lieber, A. & Strauss, M. Selection of efficient cleavage sites in target RNAs by using a ribozyme expression library. Mol. Cell Biol. 15, 540-55 (1995).
    • (1995) Mol. Cell Biol. , vol.15 , pp. 540-555
    • Lieber, A.1    Strauss, M.2
  • 9
    • 0029348716 scopus 로고
    • Identification of ribozymes within a ribozyme library that efficiently cleave a long substrate RNA
    • Campbell, T.B. & Cech, T.R. Identification of ribozymes within a ribozyme library that efficiently cleave a long substrate RNA. RNA 1, 598-609 (1995).
    • (1995) RNA , vol.1 , pp. 598-609
    • Campbell, T.B.1    Cech, T.R.2
  • 10
    • 0029134549 scopus 로고
    • Thermodynamic parameters to predict stability of RNA/DNA hybrid duplexes
    • Sugimoto, N. et al. Thermodynamic parameters to predict stability of RNA/DNA hybrid duplexes. Biochemistry 34, 11211-11216 (1995).
    • (1995) Biochemistry , vol.34 , pp. 11211-11216
    • Sugimoto, N.1
  • 11
    • 0028246149 scopus 로고
    • Antisense proliferating cell nuclear antigen oligonucleotides inhibit intimal hyperplasia in a rat carotid artery injury model
    • Simons, M., Edelman, E.R. & Rosenberg, R.D. Antisense proliferating cell nuclear antigen oligonucleotides inhibit intimal hyperplasia in a rat carotid artery injury model. J. Clin. Invest. 93, 2351-2356 (1994).
    • (1994) J. Clin. Invest. , vol.93 , pp. 2351-2356
    • Simons, M.1    Edelman, E.R.2    Rosenberg, R.D.3
  • 12
    • 0026621339 scopus 로고
    • Implication of RNA structure on antisense oligonucleotide hybridisation kinetics
    • Lima, W.F., Monia, B.P., Ecker, D.J. & Freier, S.M. Implication of RNA structure on antisense oligonucleotide hybridisation kinetics. Biochemistry 31, 12055-12061 (1992).
    • (1992) Biochemistry , vol.31 , pp. 12055-12061
    • Lima, W.F.1    Monia, B.P.2    Ecker, D.J.3    Freier, S.M.4
  • 13
    • 0028318228 scopus 로고
    • Sequence specific thermodynamic and structural properties for DNA·RNA duplexes
    • Ratmeyer, L., Vinayak, R., Zhong, Y.Y., Zon, G. & Wilson, W.D. Sequence specific thermodynamic and structural properties for DNA·RNA duplexes. Biochemistry 33, 5298-5304 (1994).
    • (1994) Biochemistry , vol.33 , pp. 5298-5304
    • Ratmeyer, L.1    Vinayak, R.2    Zhong, Y.Y.3    Zon, G.4    Wilson, W.D.5
  • 14
    • 0032488608 scopus 로고    scopus 로고
    • Solution structures of DNA·RNA hybrids with purine-rich and pyrimidine rich strands: Comparison with homologous DNA and RNA duplexes
    • Gyi, J.I., Lane, A.N., Conn, G.L. & Brown, T. Solution structures of DNA·RNA hybrids with purine-rich and pyrimidine rich strands: Comparison with homologous DNA and RNA duplexes. Biochemistry 37, 73-80 (1998).
    • (1998) Biochemistry , vol.37 , pp. 73-80
    • Gyi, J.I.1    Lane, A.N.2    Conn, G.L.3    Brown, T.4
  • 15
    • 0023651145 scopus 로고
    • Synthesis and hybridization studies on two complementary nona(2′-O-methyl)ribonucleotides
    • Inoue, H. et al. Synthesis and hybridization studies on two complementary nona(2′-O-methyl)ribonucleotides. Nucleic Acids Res, 15, 6131-6148 (1987).
    • (1987) Nucleic Acids Res , vol.15 , pp. 6131-6148
    • Inoue, H.1
  • 16
    • 0032077477 scopus 로고    scopus 로고
    • Advantages of 2′-O-methylribonucleotide probes for detecting RNA targets
    • Majlessi, M., Nelson, N.C. & Becker, M.M. Advantages of 2′-O-methylribonucleotide probes for detecting RNA targets. Nucleic Acids Res. 26, 2224-2229 (1998).
    • (1998) Nucleic Acids Res. , vol.26 , pp. 2224-2229
    • Majlessi, M.1    Nelson, N.C.2    Becker, M.M.3
  • 17
    • 0029945799 scopus 로고    scopus 로고
    • Regulation of in vitro gene expression using antisense oligonucleotides or antisense expression plasmids transfected using starburst PAMAM dendrimers
    • Bielinska, A., Kukowska-Latallo, J.F., Johnson, J., Tomalia, D.A. & Baker, J.R. Jr. Regulation of in vitro gene expression using antisense oligonucleotides or antisense expression plasmids transfected using starburst PAMAM dendrimers. Nucleic Acids Res. 24, 2176-2182 (1996).
    • (1996) Nucleic Acids Res. , vol.24 , pp. 2176-2182
    • Bielinska, A.1    Kukowska-Latallo, J.F.2    Johnson, J.3    Tomalia, D.A.4    Baker J.R., Jr.5
  • 18
    • 0032524406 scopus 로고    scopus 로고
    • Selective inhibition of cell-free translation by oligonucleotides targeted to a mRNA hairpin structure
    • Le Tinevez, R., Mishra, R.K. & Toulme, J.J. Selective inhibition of cell-free translation by oligonucleotides targeted to a mRNA hairpin structure. Nucleic Acids Res. 26, 2273-2278 (1998).
    • (1998) Nucleic Acids Res. , vol.26 , pp. 2273-2278
    • Le Tinevez, R.1    Mishra, R.K.2    Toulme, J.J.3
  • 19
    • 0039001059 scopus 로고
    • Improved double-stranded DNA sequencing using the linear polymerase chain reaction
    • Murray, V. Improved double-stranded DNA sequencing using the linear polymerase chain reaction. Nucleic Acids Res. 17, 8889 (1989).
    • (1989) Nucleic Acids Res. , vol.17 , pp. 8889
    • Murray, V.1
  • 20
    • 0026439909 scopus 로고
    • A ribozyme with DNA in the hybridising arms displays enhanced cleavage ability
    • Hendry, P., McCall, M.J., Santiago, F.S. & Jennings, P.A. A ribozyme with DNA in the hybridising arms displays enhanced cleavage ability. Nucleic Acids Res. 21, 5737-5741 (1992).
    • (1992) Nucleic Acids Res. , vol.21 , pp. 5737-5741
    • Hendry, P.1    McCall, M.J.2    Santiago, F.S.3    Jennings, P.A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.