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Volumn 36, Issue 14, 2008, Pages 4768-4777

In vitro selection of small RNA-cleaving deoxyribozymes that cleave pyrimidine-pyrimidine junctions

Author keywords

[No Author keywords available]

Indexed keywords

CYTOSINE; DEOXYRIBOZYME; RNA CLEAVING DEOXYRIBOZYME; THYMINE; URACIL;

EID: 49249091384     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkn396     Document Type: Article
Times cited : (44)

References (32)
  • 1
    • 23644453112 scopus 로고    scopus 로고
    • DNA catalysis: Potential, limitations, open questions
    • Peracchi,A. (2005) DNA catalysis: Potential, limitations, open questions. Chembiochem., 6, 1316-1322.
    • (2005) Chembiochem , vol.6 , pp. 1316-1322
    • Peracchi, A.1
  • 3
    • 28544448500 scopus 로고    scopus 로고
    • In vitro selection, characterization, and application of deoxyribozymes that cleave RNA
    • Silverman,S.K. (2005) In vitro selection, characterization, and application of deoxyribozymes that cleave RNA. Nucleic Acids Res., 33, 6151-6163.
    • (2005) Nucleic Acids Res , vol.33 , pp. 6151-6163
    • Silverman, S.K.1
  • 4
    • 33847779647 scopus 로고    scopus 로고
    • A catalytic beacon sensor for uranium with parts-per-trillion sensitivity and millionfold selectivity
    • Liu,J., Brown,A.K., Meng,X., Cropek,D.M., Istok,J.D., Watson,D.B. and Lu,Y. (2007) A catalytic beacon sensor for uranium with parts-per-trillion sensitivity and millionfold selectivity. Proc. Natl Acad. Sci. USA, 104, 2056-2061.
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , pp. 2056-2061
    • Liu, J.1    Brown, A.K.2    Meng, X.3    Cropek, D.M.4    Istok, J.D.5    Watson, D.B.6    Lu, Y.7
  • 5
    • 34547865703 scopus 로고    scopus 로고
    • A DNAzyme catalytic beacon sensor for paramagnetic Cu2+ ions in aqueous solution with high sensitivity and selectivity
    • Liu,J. and Lu,Y. (2007) A DNAzyme catalytic beacon sensor for paramagnetic Cu2+ ions in aqueous solution with high sensitivity and selectivity. J. Am. Chem. Soc., 129, 9838-9839.
    • (2007) J. Am. Chem. Soc , vol.129 , pp. 9838-9839
    • Liu, J.1    Lu, Y.2
  • 6
    • 0038209225 scopus 로고    scopus 로고
    • A colorimetric lead biosensor using DNAzyme-directed assembly of gold nanoparticles
    • Liu,J. and Lu,Y. (2003) A colorimetric lead biosensor using DNAzyme-directed assembly of gold nanoparticles. J. Am. Chem. Soc. 125, 6642-6643.
    • (2003) J. Am. Chem. Soc , vol.125 , pp. 6642-6643
    • Liu, J.1    Lu, Y.2
  • 7
    • 33846913441 scopus 로고    scopus 로고
    • Efficient signaling platforms built from a small catalytic DNA and doubly labeled fluorogenic substrates
    • Chiuman,W. and Li,Y. (2007) Efficient signaling platforms built from a small catalytic DNA and doubly labeled fluorogenic substrates. Nucleic Acids Res., 35, 401-405.
    • (2007) Nucleic Acids Res , vol.35 , pp. 401-405
    • Chiuman, W.1    Li, Y.2
  • 10
    • 4544365768 scopus 로고    scopus 로고
    • An autonomous DNA nanomotor powered by a DNA enzyme
    • Chen,Y., Wang,M. and Mao,C. (2004) An autonomous DNA nanomotor powered by a DNA enzyme. Angew. Chem. Int. Ed. Engl., 43, 3554-3557.
    • (2004) Angew. Chem. Int. Ed. Engl , vol.43 , pp. 3554-3557
    • Chen, Y.1    Wang, M.2    Mao, C.3
  • 11
    • 39749165700 scopus 로고    scopus 로고
    • DNAzyme technology and cancer therapy: Cleave and let die
    • Dass,C.R., Choong,P.F. and Khachigian,L.M. (2008) DNAzyme technology and cancer therapy: Cleave and let die. Mol. Cancer Ther., 7, 243-251.
    • (2008) Mol. Cancer Ther , vol.7 , pp. 243-251
    • Dass, C.R.1    Choong, P.F.2    Khachigian, L.M.3
  • 12
    • 0033709117 scopus 로고    scopus 로고
    • Catalytic DNAs as potential therapeutic agents and sequence-specific molecular tools to dissect biological function
    • Khachigian,L.M. (2000) Catalytic DNAs as potential therapeutic agents and sequence-specific molecular tools to dissect biological function. J. Clin. Invest, 106, 1189-1195.
    • (2000) J. Clin. Invest , vol.106 , pp. 1189-1195
    • Khachigian, L.M.1
  • 13
    • 1642458402 scopus 로고    scopus 로고
    • Prospects for antiviral ribozymes and deoxyribozymes
    • Peracchi,A. (2004) Prospects for antiviral ribozymes and deoxyribozymes. Rev. Med. Virol., 14, 47-64.
    • (2004) Rev. Med. Virol , vol.14 , pp. 47-64
    • Peracchi, A.1
  • 14
    • 0034047698 scopus 로고    scopus 로고
    • Using DNAzymes to cut, process, and map RNA molecules for structural studies or modification
    • Pyle,A.M., Chu,V.T., Jankowsky,E. and Boudvillain,M. (2000). Using DNAzymes to cut, process, and map RNA molecules for structural studies or modification. Methods Enzymol., 317, 140-146.
    • (2000) Methods Enzymol , vol.317 , pp. 140-146
    • Pyle, A.M.1    Chu, V.T.2    Jankowsky, E.3    Boudvillain, M.4
  • 16
    • 1142281951 scopus 로고    scopus 로고
    • Dinucleotide junction cleavage versatility of 8-17 deoxyribozyme
    • Cruz,R.P., Withers,J.B. and Li,Y. (2004) Dinucleotide junction cleavage versatility of 8-17 deoxyribozyme. Chem. Biol., 11, 57-67.
    • (2004) Chem. Biol , vol.11 , pp. 57-67
    • Cruz, R.P.1    Withers, J.B.2    Li, Y.3
  • 17
    • 0037930729 scopus 로고    scopus 로고
    • Optimisation of the 10-23 DNAzyme-substrate pairing interactions enhanced RNA cleavage activity at purine-cytosine target sites
    • Cairns,M.J., King,A. and Sun,L.Q. (2003) Optimisation of the 10-23 DNAzyme-substrate pairing interactions enhanced RNA cleavage activity at purine-cytosine target sites. Nucleic Acids Res., 31, 2883-2889.
    • (2003) Nucleic Acids Res , vol.31 , pp. 2883-2889
    • Cairns, M.J.1    King, A.2    Sun, L.Q.3
  • 18
    • 0035914482 scopus 로고    scopus 로고
    • A new and efficient DNA enzyme for the sequence-specific cleavage of RNA
    • Feldman,A.R. and Sen,D. (2001) A new and efficient DNA enzyme for the sequence-specific cleavage of RNA. J. Mol. Biol., 313, 283-294.
    • (2001) J. Mol. Biol , vol.313 , pp. 283-294
    • Feldman, A.R.1    Sen, D.2
  • 19
    • 41149095145 scopus 로고    scopus 로고
    • Sequence-function relationships provide new insight into the cleavage site selectivity of the 8-17 RNA-cleaving deoxyribozyme
    • Schlosser,K., Gu,J., Sule,L. and Li,Y. (2008) Sequence-function relationships provide new insight into the cleavage site selectivity of the 8-17 RNA-cleaving deoxyribozyme. Nucleic Acids Res., 36, 1472-1481.
    • (2008) Nucleic Acids Res , vol.36 , pp. 1472-1481
    • Schlosser, K.1    Gu, J.2    Sule, L.3    Li, Y.4
  • 20
    • 0033575087 scopus 로고    scopus 로고
    • Kinetics for specific base catalysis of RNA degradation by transestcerification involving the 2-hydroxyl group
    • Li,Y. and Breaker,R.R. (1999) Kinetics for specific base catalysis of RNA degradation by transestcerification involving the 2-hydroxyl group. J. Am. Chem. Soc., 121, 5364-5372.
    • (1999) J. Am. Chem. Soc , vol.121 , pp. 5364-5372
    • Li, Y.1    Breaker, R.R.2
  • 21
    • 24644514250 scopus 로고    scopus 로고
    • Peracchi,A., Bonaccio,M. and Clerici.M. (2005) A mutational analysis of the 8-17 deoxyribozyme core. J. Mol. Biol., 352, 793-794.
    • Peracchi,A., Bonaccio,M. and Clerici.M. (2005) A mutational analysis of the 8-17 deoxyribozyme core. J. Mol. Biol., 352, 793-794.
  • 22
    • 0031215119 scopus 로고    scopus 로고
    • Evidence for the metal-cofactor independence of an RNA phosphodiester-cleaving DNA enzyme
    • Geyer,C.R. and Sen,D. (1997) Evidence for the metal-cofactor independence of an RNA phosphodiester-cleaving DNA enzyme. Chem. Biol., 4, 579-593.
    • (1997) Chem. Biol , vol.4 , pp. 579-593
    • Geyer, C.R.1    Sen, D.2
  • 23
    • 0014413528 scopus 로고
    • The interaction of nucleosides in aqueous solution
    • Solie,T.N. and Schellman,J.A. (1968) The interaction of nucleosides in aqueous solution. J. Mol. Biol., 33, 61-77.
    • (1968) J. Mol. Biol , vol.33 , pp. 61-77
    • Solie, T.N.1    Schellman, J.A.2
  • 24
    • 0014930798 scopus 로고
    • Molecular interactions of pyrimidines, purines, and some other heteroaromatic compounds in aqueous media
    • Nakano,N.I. and Igarashi,S.J. (1970) Molecular interactions of pyrimidines, purines, and some other heteroaromatic compounds in aqueous media. Biochemistry, 9, 577-583.
    • (1970) Biochemistry , vol.9 , pp. 577-583
    • Nakano, N.I.1    Igarashi, S.J.2
  • 26
    • 0030498356 scopus 로고    scopus 로고
    • The Ca2+ ion as a cofactor for a novel RNA-cleaving deoxyribozyme
    • Faulhammer,D. and Famulok,M. (1996) The Ca2+ ion as a cofactor for a novel RNA-cleaving deoxyribozyme. Angew. Chem. Int. Ed. Engl., 35, 2809-2813.
    • (1996) Angew. Chem. Int. Ed. Engl , vol.35 , pp. 2809-2813
    • Faulhammer, D.1    Famulok, M.2
  • 27
    • 0034650291 scopus 로고    scopus 로고
    • In vitro selection and characterization of a highly efficient Zn(II)-dependent RNA-cleaving deoxyribozyme
    • Li,J., Zheng,W., Kwon,A.H. and Lu,Y. (2000) In vitro selection and characterization of a highly efficient Zn(II)-dependent RNA-cleaving deoxyribozyme. Nucleic Acids Res., 28, 481-488.
    • (2000) Nucleic Acids Res , vol.28 , pp. 481-488
    • Li, J.1    Zheng, W.2    Kwon, A.H.3    Lu, Y.4
  • 28
    • 0034697291 scopus 로고    scopus 로고
    • Preferential activation of the 8-17 deoxyribozyme by Ca(2 +) ions. Evidence for the identity of 8-17 with the catalytic domain of the Mg5 deoxyribozyme
    • Peracchi,A. (2000) Preferential activation of the 8-17 deoxyribozyme by Ca(2 +) ions. Evidence for the identity of 8-17 with the catalytic domain of the Mg5 deoxyribozyme. J. Biol. Chem., 275, 11693-11697.
    • (2000) J. Biol. Chem , vol.275 , pp. 11693-11697
    • Peracchi, A.1
  • 29
    • 0030898510 scopus 로고    scopus 로고
    • A general purpose RNA-cleaving DNA enzyme
    • Santoro,S.W. and Joyce,G.F. (1997) A general purpose RNA-cleaving DNA enzyme. Proc. Natl Acad. Sci. USA, 94, 4262 -4266.
    • (1997) Proc. Natl Acad. Sci. USA , vol.94 , pp. 4262-4266
    • Santoro, S.W.1    Joyce, G.F.2
  • 30
    • 3342955521 scopus 로고    scopus 로고
    • Tracing sequence diversity change of RNA-cleaving deoxyribozymes under increasing selection pressure during in vitro selection
    • Schlosser,K. and Li,Y. (2004) Tracing sequence diversity change of RNA-cleaving deoxyribozymes under increasing selection pressure during in vitro selection. Biochemistry, 43, 9695-9707.
    • (2004) Biochemistry , vol.43 , pp. 9695-9707
    • Schlosser, K.1    Li, Y.2
  • 31
    • 1142277795 scopus 로고    scopus 로고
    • Assessing the likelihood of recurrence during RNA evolution in vitro
    • Lehman,N. (2004) Assessing the likelihood of recurrence during RNA evolution in vitro. Artif. Life, 10, 1-22.
    • (2004) Artif. Life , vol.10 , pp. 1-22
    • Lehman, N.1
  • 32
    • 24744435998 scopus 로고    scopus 로고
    • Diverse evolutionary trajectories characterize a community of RNA-cleaving deoxyribozymes: A case study into the population dynamics of in vitro selection
    • Schlosser,K. and Li,Y. (2005) Diverse evolutionary trajectories characterize a community of RNA-cleaving deoxyribozymes: A case study into the population dynamics of in vitro selection. J. Mol. Evol., 61, 192-206.
    • (2005) J. Mol. Evol , vol.61 , pp. 192-206
    • Schlosser, K.1    Li, Y.2


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