Catalytic molecular beacons

ChemBioChem

Volumn 2, Issue 6, 2001, Pages 411-415

  Stojanovic, Milan N ^a   De Prada, Paloma ^a   Landry, Donald W ^a  

^a Columbia University ^*  (United States)

Author keywords

Deoxyribozymes; DNA recognition; Fluorescence spectroscopy; Molecular beacons; Nucleic acids

Indexed keywords

DEOXYRIBOZYME; FLUORESCENT DYE; OLIGONUCLEOTIDE;

ARTICLE; CATALYSIS; CHEMISTRY; CONFORMATION; METABOLISM; SPECTROFLUOROMETRY;

CATALYSIS; DNA, CATALYTIC; FLUORESCENT DYES; NUCLEIC ACID CONFORMATION; OLIGONUCLEOTIDES; SPECTROMETRY, FLUORESCENCE;

EID: 0035383109     PISSN: 14394227     EISSN: None     Source Type: Journal    
DOI: 10.1002/1439-7633(20010601)2:6<411::AID-CBIC411>3.0.CO;2-I     Document Type: Article

References (21)

1. a) A. J. Schafer, J. R. Hawkins, Nat. Biotechnol. 1998, 16, 33-39;
2. b) W. E. Evans, J. R. Hawkins, Science 1999, 286, 487-491.
3. For representative homogenous assays based on PCR amplification prior to fluorescence detection see: a) TaqMan™: P. M. Holland, R. D. Abramson, R. Watson, D. H. Gelfand, Proc. Natl. Acad. Sci. USA 1991, 88, 7276-7280;
4. b) molecular beacons: L. G. Kostrikis, S. Tyagi, M. M. Mlanga, D. D. Ho, F. R. Kramer, Science 1998, 279, 1228-1229;
5. c) "sunrise" primers: I. A. Nazarenko, S. K. Bhatnagar, R. J. Hohman, Nucleic Acids Res. 1997, 25, 2516-2521;
6. d) ligation assays : X. Chen, K. J. Livak, P.-Y. Kwok, Genome Res. 1998, 8, 549-556.
7. For recent methods for detection of single-stranded nucleic acids without PCR amplification see: a)colorimetric detection: J. J. Storhoff, R. Elghanian, R. C. Mucic, C. A. Mirkin, R. L. Letsinger, J. Am. Chem. Soc. 1998, 120, 1959-1964;
8. b) microgravimetric heterogeneous system: F. Patolsky, A. Lichtenstein, I. Willner, J. Am. Chem. Soc. 2000, 122, 418-419;
9. c) scanometric DNA array detection: T. A. Taton, C. A. Mirkin, R. L. Letsinger, Science 2000, 289, 1757-1760;
10. d) chemical tagging: D. M. John, K. M. Weeks, Chem. Biol. 2000, 7, 405-410.
11. a) S. Tyagi, D. P. Bratu, F. R. Kramer, Nat. Biotechnol. 1998, 16, 49-53;
12. b) G. Bonnet, S. Tyagi, A. Libchaber, F. R. Kramer, Proc. Natl. Acad. Sci. USA 1999, 90, 6171-6176.
13. a) H. Porta, P. M. Lizardi, Biotechnology 1995, 13, 161-164;
14. b) M. P. Roberson, A. D. Ellington, Nat. Biotechnol. 1999, 17, 62-66.
15. G. A. Soukup, R. R. Breaker, Trends Biotechnol. 1999, 17, 469-476.
16. R. R. Breaker, G. F. Joyce, Chem. Biol. 1995, 2, 655-660.
17. J. R. Sampson, M. E. Saks, Methods Mol. Biol. 1996, 267, 384-410.
18. B. R. Kelemen, T. A. Klink, M. A. Behlke, S. R. Eubanks, P. A. Leland, R. T. Raines, Nucleic Acids Res. 1999, 27, 3696-3701.
19. a) K. K. Singh, R. Parwaresch, G. Krupp, RNA 1999, 5, 1348-1356;
20. b) A. Jenne, W. Gmelin, N. Raffler, M. Famulok, Angew. Chem. 1999, 111, 1383-1386;
21. Angew. Chem. Int. Ed. 1999, 38, 1300-1303.