Applications for profiling the schistosome transcriptome

Trends in Parasitology

Volumn 26, Issue 9, 2010, Pages 434-439

  Gobert, Geoffrey N ^a  

^a QIMR BERGHOFER MEDICAL RESEARCH INSTITUTE   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTOME;

ANCYLOSTOMA CANINUM; GENE EXPRESSION; GENOME; HOST PARASITE INTERACTION; HUMAN; IMMUNE RESPONSE; MICROARRAY ANALYSIS; NECATOR AMERICANUS; NEMATODE LIFE CYCLE STAGE; NONHUMAN; QUANTITATIVE ANALYSIS; REVIEW; SCHISTOSOMA JAPONICUM; SCHISTOSOMA MANSONI; SCHISTOSOMIASIS;

ANIMALS; BLOOD; FEMALE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; HELMINTH PROTEINS; HOST-PARASITE INTERACTIONS; HUMANS; LIFE CYCLE STAGES; MALE; MICE; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; SCHISTOSOMA; SCHISTOSOMA HAEMATOBIUM; SCHISTOSOMA MANSONI; SCHISTOSOMIASIS; SNAILS; SPECIES SPECIFICITY;

SCHISTOSOMA;

EID: 77955918416     PISSN: 14714922     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.pt.2010.04.009     Document Type: Review

References (72)

1. King C.H., et al. Reassessment of the cost of chronic helminthic infection: a meta-analysis of disability-related outcomes in endemic schistosomiasis. Lancet 2005, 365:1561-1569.
2. Ross A.G., et al. Schistosomiasis. N. Engl. J. Med. 2002, 346:1212-1220.
3. Hu W., et al. Evolutionary and biomedical implications of a Schistosoma japonicum complementary DNA resource. Nat. Genet. 2003, 35:139-147.
4. Verjovski-Almeida S., et al. Transcriptome analysis of the acoelomate human parasite Schistosoma mansoni. Nat. Genet. 2003, 35:148-157.
5. Irimia D., et al. Genome-wide transcriptome analysis of 150 cell samples. Integr. Biol. (Camb) 2009, 1:99-107. PMID: 20023796.
6. Taniguchi K., et al. Quantitative analysis of gene expression in a single cell by qPCR. Nat. Methods 2009, 6:U503-U550.
7. Tang F.C., et al. mRNA-Seq whole-transcriptome analysis of a single cell. Nat. Methods 2009, 6:U377-U386.
8. Brindley P.J., Pearce E.J. Genetic manipulation of schistosomes. Int. J. Parasitol. 2007, 37:465-473.
9. Ranjit N., et al. A survey of the intestinal transcriptomes of the hookworms, Necator americanus and Ancylostoma caninum, using tissues isolated by laser microdissection microscopy. Int. J. Parasitol. 2006, 36:701-710.
10. Gobert G.N., et al. Tissue specific profiling of females of Schistosoma japonicum by Integrated laser microdissection microscopy and microarray analysis. PLoS Negl. Trop. Dis. 2009, 3:e469.
11. Gobert G.N., et al. The ultrastructural architecture of the adult Schistosoma japonicum tegument. Int. J. Parasitol. 2003, 33:1561-1575.
12. Gobert G.N. The role of microscopy in the investigation of paramyosin as a vaccine candidate against Schistosoma japonicum. Parasitol. Today 1998, 14:115-118.
13. Jones M.K., et al. The cytoskeleton and motor proteins of human schistosomes and their roles in surface maintenance and host-parasite interactions. Bioessays 2004, 26:752-765.
14. Braschi S., Wilson R.A. Proteins exposed at the adult schistosome surface revealed by biotinylation. Mol. Cell Proteomics 2006, 5:347-356.
15. Braschi S., et al. Proteomic analysis of the schistosome tegument and its surface membranes. Mem. Inst. Oswaldo Cruz 2006, 101(Suppl 1):205-212.
16. Jones M.K., et al. Towards tissue specific transcriptomics and expression pattern analysis in schistosomes using laser microdissection microscopy. Exp. Parasitol. 2007, 117:259-266.
17. Gobert G.N., et al. Microarrays: new tools to unravel parasite transcriptomes. Parasitology 2005, 131:439-448.
18. Churchill G.A. Fundamentals of experimental design for cDNA microarrays. Nat. Genet. 2002, 32(Suppl.):490-495.
19. Hoffmann K.F., et al. Identification of Schistosoma mansoni gender-associated gene transcripts by cDNA microarray profiling. Genome Biol. 2002, 3. RESEARCH0041. Epub 2002 Jul 25. PMID: 12186648.
20. Hoffmann K.F., Fitzpatrick J.M. Gene expression studies using self-fabricated parasite cDNA microarrays. Methods Mol. Biol. 2004, 270:219-236.
21. Fitzpatrick J.M., et al. An oligonucleotide microarray for transcriptome analysis of Schistosoma mansoni and its application/use to investigate gender-associated gene expression. Mol. Biochem. Parasitol. 2005, 141:1-13.
22. Moertel L., et al. Oligonucleotide microarray analysis of strain- and gender-associated gene expression in the human blood fluke, Schistosoma japonicum. Mol. Cell. Probes 2006, 20:280-289.
23. Chai M., et al. Transcriptome profiling of lung schistosomula, in vitro cultured schistosomula and adult Schistosoma japonicum. Cell. Mol. Life Sci. 2006, 63:919-929.
24. Bickle Q.D. Radiation-attenuated schistosome vaccination-a brief historical perspective. Parasitology 2009, 136:1621-1632.
25. Dillon G.P., et al. Altered patterns of gene expression underlying the enhanced immunogenicity of radiation-attenuated schistosomes. PLoS Negl. Trop. Dis. 2008, 2:e240.
26. Jolly E.R., et al. Gene expression patterns during adaptation of a helminth parasite to different environmental niches. Genome Biol. 2007, 8:R65.
27. Dillon G.P., et al. Microarray analysis identifies genes preferentially expressed in the lung schistosomulum of Schistosoma mansoni. Int. J. Parasitol. 2006, 36:1-8.
28. Gobert G.N., et al. Developmental gene expression profiles of the human pathogen Schistosoma japonicum. BMC Genomics 2009, 10:128.
29. Fitzpatrick J.M., et al. Anti-schistosomal intervention targets identified by lifecycle transcriptomic analyses. PLoS Negl. Trop. Dis. 2009, 3:e543.
30. Liu F., et al. SjTPdb: integrated transcriptome and proteome database and analysis platform for Schistosoma japonicum. BMC Genomics 2008, 9:304.
31. Zerlotini A., et al. SchistoDB: a Schistosoma mansoni genome resource. Nucleic Acids Res. 2009, 37:D579-582.
32. Knox D.P., Skuce P.J. SAGE and the quantitative analysis of gene expression in parasites. Trends Parasitol. 2005, 21:322-326.
33. Ojopi E.P., et al. A quantitative view of the transcriptome of Schistosoma mansoni adult-worms using SAGE. BMC Genomics 2007, 8:186.
34. Williams D.L., et al. Profiling Schistosoma mansoni development using serial analysis of gene expression (SAGE). Exp. Parasitol. 2007, 117:246-258.
35. Liu F., et al. The Schistosoma japonicum genome reveals features of host-parasite interplay. Nature 2009, 460:345-351.
36. Berriman M., et al. The genome of the blood fluke Schistosoma mansoni. Nature 2009, 460:352-358.
37. Burke M.L., et al. Immunopathogenesis of human schistosomiasis. Parasite Immunol. 2009, 31:163-176.
38. Hoffmann K.F., et al. Disease fingerprinting with cDNA microarrays reveals distinct gene expression profiles in lethal type 1 and type 2 cytokine-mediated inflammatory reactions. FASEB J. 2001, 15:2545-2547.
39. Sandler N.G., et al. Global gene expression profiles during acute pathogen-induced pulmonary inflammation reveal divergent roles for Th1 and Th2 responses in tissue repair. J. Immunol. 2003, 171:3655-3667.
40. Edungbola L.D., et al. Granuloma formation around exogenous eggs of Schistosoma mansoni and Schistosoma japonicum in mice. Afr. J. Med. Med. Sci. 1982, 11:75-79.
41. Burke M.L., et al. Temporal Expression of Chemokines Dictates the Hepatic Inflammatory Infiltrate in a Murine Model of Schistosomiasis. PLoS Negl. Trop. Dis. 2010, 4:e598.
42. Vermeire J.J., et al. Differential gene expression and the effects of Biomphalaria glabrata embryonic (Bge) cell factors during larval Schistosoma mansoni development. Mol. Biochem. Parasitol. 2004, 135:153-157.
43. Vermeire J.J., et al. Schistosoma mansoni: DNA microarray gene expression profiling during the miracidium-to-mother sporocyst transformation. Mol. Biochem. Parasitol. 2006, 147:39-47.
44. Taft A.S., et al. Transcriptome analysis of Schistosoma mansoni larval development using serial analysis of gene expression (SAGE). Parasitology 2009, 136:469-485.
45. Yang W., et al. Oral vaccination of mice with recombinant Schistosoma japonicum proteins induces specific anti-parasite antibodies and damage to adult worms after a challenge infection. Int. J. Parasitol. 1997, 27:843-853.
46. You H., et al. Transcriptional profiles of adult male and female Schistosoma japonicum in response to insulin reveal increased expression of genes involved in growth and development. Int. J. Parasitol. 2009, 39:1551-1559.
47. Gobert G.N., et al. Transcriptional changes in Schistosoma mansoni during early schistosomula development and in the presence of erythrocytes. PLOS Negl. Trop. Dis. 2010, 4:e600.
48. Aragon A.D., et al. Towards an understanding of the mechanism of action of praziquantel. Mol. Biochem. Parasitol. 2009, 164:57-65.
49. Aragon A.D., et al. Microarray based analysis of temperature and oxidative stress induced messenger RNA in Schistosoma mansoni. Mol. Biochem. Parasitol. 2008, 162:134-141.
50. Gobert G.N., Jones M.K. Discovering new schistosome drug targets: the role of transcriptomics. Curr. Drug Targets 2008, 9:922-930.
51. Fitzpatrick J.M., et al. Gender-associated gene expression in two related strains of Schistosoma japonicum. Mol. Biochem. Parasitol. 2004, 136:191-209.
52. Le T.H., et al. Revisiting the question of limited genetic variation within Schistosoma japonicum. Ann. Trop. Med. Parasitol. 2002, 96:155-164.
53. Hope M., et al. A biological and immunological comparison of Chinese and Philippine Schistosoma japonicum. Int. J. Parasitol. 1996, 26:325-332.
54. Gobert G.N., et al. Transcriptomics tool for the human Schistosoma blood flukes using microarray gene expression profiling. Exp. Parasitol. 2006, 114:160-172.
55. Rennie C., et al. Strong position-dependent effects of sequence mismatches on signal ratios measured using long oligonucleotide microarrays. BMC Genomics 2008, 9:317.
56. Hughes T.R., et al. Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer. Nat. Biotechnol. 2001, 19:342-347.
57. Krautz-Peterson G., et al. RNA interference in schistosomes: machinery and methodology. Parasitology 2009, 137:1-11.
58. Correnti J.M., et al. Long-term suppression of cathepsin B levels by RNA interference retards schistosome growth. Mol. Biochem. Parasitol. 2005, 143:209-215.
59. Morales M.E., et al. RNA interference of Schistosoma mansoni cathepsin D, the apical enzyme of the hemoglobin proteolysis cascade. Mol. Biochem. Parasitol. 2008, 157:160-168.
60. Faghiri Z., Skelly P.J. The role of tegumental aquaporin from the human parasitic worm, Schistosoma mansoni, in osmoregulation and drug uptake. FASEB J 2009, 23:2780-2789.
61. Rinaldi G., et al. RNA interference targeting leucine aminopeptidase blocks hatching of Schistosoma mansoni eggs. Mol. Biochem. Parasitol. 2009, 167:118-126.
62. Alger H.M., Williams D.L. The disulfide redox system of Schistosoma mansoni and the importance of a multifunctional enzyme, thioredoxin glutathione reductase. Mol. Biochem. Parasitol. 2002, 121:129-139.
63. Mourao Mde M., et al. Role of the endogenous antioxidant system in the protection of Schistosoma mansoni primary sporocysts against exogenous oxidative stress. PLoS Negl. Trop. Dis. 2009, 3:e550.
64. Geldhof P., et al. RNA interference in parasitic helminths: current situation, potential pitfalls and future prospects. Parasitology 2007, 134:609-619.
65. DeMarco R., Verjovski-Almeida S. Schistosomes-proteomics studies for potential novel vaccines and drug targets. Drug Discov. Today 2009, 14:472-478.
66. Mulvenna J., et al. Exposed proteins of the Schistosoma japonicum tegument. Int. J. Parasitol. 2009, 40:543-554.
67. Yang L.L., et al. Schistosoma japonicum: proteomics analysis of differentially expressed proteins from ultraviolet-attenuated cercariae compared to normal cercariae. Parasitol. Res. 2009, 105:237-248.
68. Cai P., et al. Molecular characterization of Schistosoma japonicum tegument protein tetraspanin-2: sequence variation and possible implications for immune evasion. Biochem. Biophys. Res. Commun. 2008, 372:197-202.
69. Metzker M.L. Sequencing technologies - the next generation. Nat. Rev. Genet. 2010, 11:31-46.
70. Kines K.J., et al. Transduction of Schistosoma mansoni by vesicular stomatitis virus glycoprotein-pseudotyped Moloney murine leukemia retrovirus. Exp. Parasitol. 2006, 112:209-220.
71. Kines K.J., et al. Integration of reporter transgenes into Schistosoma mansoni chromosomes mediated by pseudotyped murine leukemia virus. FASEB J. 2008, 22:2936-2948.
72. Morales M.E., et al. piggyBac transposon mediated transgenesis of the human blood fluke, Schistosoma mansoni. FASEB. J. 2007, 21:3479-3489.