SAGE and the quantitative analysis of gene expression in parasites

Trends in Parasitology

Volumn 21, Issue 7, 2005, Pages 322-326

  Knox, David P ^a   Skuce, Philip J ^a  

^a MOREDUN RESEARCH INSTITUTE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

DNA MICROARRAY; GENE EXPRESSION PROFILING; LARVAL DEVELOPMENT; NONHUMAN; PROTOZOAL GENETICS; QUANTITATIVE ANALYSIS; REVIEW; SERIAL ANALYSIS OF GENE EXPRESSION;

ANIMALIA;

EID: 20444390067     PISSN: 14714922     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.pt.2005.05.011     Document Type: Article

References (34)

1. J. Parkinson 400,000 nematode ESTs on the Net Trends Parasitol. 19 2003 283 286
2. D.P. Knox Technological advances and genomics in metazoan parasites Int. J. Parasitol. 34 2004 139 152
3. J. Parkinson NEMBASE: a resource for parasitic nematode ESTs Nucleic Acids Res. 32 2004 D427 D430
4. S. Verjovski-Almeida Transcriptome analysis of the acoelomate human parasite Schistosoma mansoni Nat. Genet. 35 2003 148 157
5. M.D. Cleary Toxoplasma gondii asexual development: identification of developmentally regulated genes and distinct patterns of gene expression Eukaryot. Cell 1 2002 329 340
6. L. Li Gene discovery in the Apicomplexa as revealed by EST sequencing and assembly of a comparative gene database Genome Res. 13 2003 443 454
7. V.E. Velculescu Analysing uncharted transcriptomes with SAGE Trends Genet. 16 2000 423 425
8. M. Yamamoto Use of serial analysis of gene expression (SAGE) technology J. Immunol. Methods 250 2001 45 66
9. B. Virlon Serial microanalysis of renal transcriptomes Proc. Natl. Acad. Sci. U. S. A. 96 1999 15286 15291
10. L. Neilson Molecular phenotype of the human oocyte by PCR-SAGE Genomics 63 2000 13 24
11. N.A. Datson MicroSAGE: a modified procedure for serial analysis of gene expression in limited amounts of tissue Nucleic Acids Res. 27 1999 1300 1307
12. M.S. Schober Serial analysis of gene expression in a single cell Biotechnology (N. Y.) 31 2001 1240 1242
13. M. Ishii Direct comparison of GeneChip and SAGE on the quantitative accuracy in transcript profiling analysis Genomics 68 2000 136 143
14. R. Nadon, and J. Shoemaker Statistical issues with microarrays: processing and analysis Trends Genet. 18 2002 265 271
15. V.E. Velculescu Seria1 analysis of gene expression Science 270 1995 484 487
16. W.D. Patino Serial analysis of gene expression: technical considerations and applications to cardiovascular biology Circ. Res. 91 2002 565 569
17. S. Saha Using the transcriptome to annotate the genome Nat. Biotechnol. 20 2002 508 512
18. E. Pleasance Assessment of SAGE in transcript identification Genome Res. 13 2003 1203 1215
19. D.G. Peters Comprehensive transcript analysis in small quantities of mRNA by SAGE-lite Nucleic Acids Res. 27 1999 e39
20. H. Matsumura SuperSAGE Cell. Microbiol. 7 2005 11 18
21. N.A. Datson MicroSAGE: a modified procedure for serial analysis of gene expression in limited amounts of tissue Nucleic Acids Res. 27 1999 1300 1307
22. S.Q. Ye miniSAGE: gene expression profiling using serial analysis of gene expression from 1 microgram total RNA Anal. Biochem. 287 2000 144 152
23. A. van den Berg Serial analysis of gene expression: rapid RT-PCR analysis of unknown SAGE tags Nucleic Acids Res. 27 1999 e17
24. R. Tuteja, and N. Tuteja Serial Analysis of Gene Expression: Applications in Human Studies J. Biomed. Biotechnol. 2004 2004 113 120
25. H. Chen Characterization of gene expression in resting and activated mast cells J. Exp. Med. 188 1998 1657 1668
26. D. Buzoni-Gatel Adoptive transfer of gut intraepithelial lymphocytes protects against murine infection with Toxoplasma gondii J. Immunol. 158 1997 5883 5889
27. J. Shires Biological insights into TCRgammadelta+ and TCRalphabeta+ intraepithelial lymphocytes provided by serial analysis of gene expression (SAGE) Immunity 15 2001 419 434
28. A. Munasinghe Serial analysis of gene expression (SAGE) in Plasmodium falciparum: application of the technique to AT rich genomes Mol. Biochem. Parasitol. 113 2001 23 34
29. S. Patankar Serial analysis of gene expression in Plasmodium falciparum reveals the global expression profile of erythrocytic stages and the presence of anti-sense transcripts in the malarial parasite Mol. Biol. Cell 12 2001 3114 3125
30. A.M. Gunasekera Drug-induced alterations in gene expression of the asexual blood forms of Plasmodium falciparum Mol. Microbiol. 50 2003 1229 1239
31. S.J. Jones Changes in gene expression associated with developmental arrest and longevity in Caenorhabditis elegans Genome Res. 11 2001 1346 1352
32. P.J. Skuce An evaluation of serial analysis of gene expression (SAGE) in the parasitic nematode, Haemonchus contortus Parasitology 130 2005 1 7
33. D.P. McManus Schistosome transcriptome analysis at the cutting edge Trends Parasitol. 20 2004 301 304
34. J.P. Semblat Laser capture microdissection of Plasmodium falciparum liver stages for mRNA analysis Mol. Biochem. Parasitol. 121 2002 179 183