-
1
-
-
13044304179
-
Distinctive gene expression patterns in human mammary epithelial cells and breast cancers
-
10.1073/pnas.96.16.9212, 17759, 10430922
-
Perou CM, Jeffrey SS, van de Rijn M, Rees CA, Eisen MB, Ross DT, Pergamenschikov A, Williams CF, Zhu SX, Lee JC, et al. Distinctive gene expression patterns in human mammary epithelial cells and breast cancers. Proc Natl Acad Sci USA 1999, 96(16):9212-9217. 10.1073/pnas.96.16.9212, 17759, 10430922.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, Issue.16
, pp. 9212-9217
-
-
Perou, C.M.1
Jeffrey, S.S.2
van de Rijn, M.3
Rees, C.A.4
Eisen, M.B.5
Ross, D.T.6
Pergamenschikov, A.7
Williams, C.F.8
Zhu, S.X.9
Lee, J.C.10
-
2
-
-
0034680102
-
Molecular portraits of human breast tumours
-
10.1038/35021093, 10963602
-
Perou CM, Sorlie T, Eisen MB, van de Rijn M, Jeffrey SS, Rees CA, Pollack JR, Ross DT, Johnsen H, Akslen LA, et al. Molecular portraits of human breast tumours. Nature 2000, 406(6797):747-752. 10.1038/35021093, 10963602.
-
(2000)
Nature
, vol.406
, Issue.6797
, pp. 747-752
-
-
Perou, C.M.1
Sorlie, T.2
Eisen, M.B.3
van de Rijn, M.4
Jeffrey, S.S.5
Rees, C.A.6
Pollack, J.R.7
Ross, D.T.8
Johnsen, H.9
Akslen, L.A.10
-
3
-
-
41849084544
-
Gene expression profiling of breast cancer
-
10.1146/annurev.pathmechdis.3.121806.151505, 18039137
-
Cheang MC, van de Rijn M, Nielsen TO. Gene expression profiling of breast cancer. Annu Rev Pathol 2008, 3:67-97. 10.1146/annurev.pathmechdis.3.121806.151505, 18039137.
-
(2008)
Annu Rev Pathol
, vol.3
, pp. 67-97
-
-
Cheang, M.C.1
van de Rijn, M.2
Nielsen, T.O.3
-
4
-
-
57749115814
-
The role of molecular analysis in breast cancer
-
10.1080/00313020802563536, 19089743
-
Geyer FC, Marchio C, Reis-Filho JS. The role of molecular analysis in breast cancer. Pathology 2009, 41(1):77-88. 10.1080/00313020802563536, 19089743.
-
(2009)
Pathology
, vol.41
, Issue.1
, pp. 77-88
-
-
Geyer, F.C.1
Marchio, C.2
Reis-Filho, J.S.3
-
5
-
-
62449117641
-
Introducing molecular subtyping of breast cancer into the clinic?
-
10.1200/JCO.2008.20.6276, 19204193
-
Sorlie T. Introducing molecular subtyping of breast cancer into the clinic?. J Clin Oncol 2009, 27(8):1153-1154. 10.1200/JCO.2008.20.6276, 19204193.
-
(2009)
J Clin Oncol
, vol.27
, Issue.8
, pp. 1153-1154
-
-
Sorlie, T.1
-
6
-
-
60849097255
-
Gene-expression signatures in breast cancer
-
10.1056/NEJMra0801289, 19228622
-
Sotiriou C, Pusztai L. Gene-expression signatures in breast cancer. N Engl J Med 2009, 360(8):790-800. 10.1056/NEJMra0801289, 19228622.
-
(2009)
N Engl J Med
, vol.360
, Issue.8
, pp. 790-800
-
-
Sotiriou, C.1
Pusztai, L.2
-
7
-
-
42449097765
-
Reasons for breast cancer heterogeneity
-
10.1186/jbiol67, 2263121, 18304379
-
Bertucci F, Birnbaum D. Reasons for breast cancer heterogeneity. J Biol 2008, 7(2):6. 10.1186/jbiol67, 2263121, 18304379.
-
(2008)
J Biol
, vol.7
, Issue.2
, pp. 6
-
-
Bertucci, F.1
Birnbaum, D.2
-
8
-
-
34250217011
-
Expression genomics in breast cancer research: microarrays at the crossroads of biology and medicine
-
10.1186/bcr1662, 1868923, 17397520
-
Miller LD, Liu ET. Expression genomics in breast cancer research: microarrays at the crossroads of biology and medicine. Breast Cancer Res 2007, 9(2):206. 10.1186/bcr1662, 1868923, 17397520.
-
(2007)
Breast Cancer Res
, vol.9
, Issue.2
, pp. 206
-
-
Miller, L.D.1
Liu, E.T.2
-
9
-
-
0035845511
-
Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications
-
Sorlie T, Perou C, Tibshirani R, Aas T, Geisler S, Johnsen H, Hastie T, Eisen M, van de Rijn M, Jeffrey S. Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications. Proceedings of the National Academy of Sciences 2001, 98(19):10869.
-
(2001)
Proceedings of the National Academy of Sciences
, vol.98
, Issue.19
, pp. 10869
-
-
Sorlie, T.1
Perou, C.2
Tibshirani, R.3
Aas, T.4
Geisler, S.5
Johnsen, H.6
Hastie, T.7
Eisen, M.8
van de Rijn, M.9
Jeffrey, S.10
-
10
-
-
0036856374
-
Methods for assessing reproducibility of clustering patterns observed in analyses of microarray data
-
Oxford Univ Press
-
McShane L, Radmacher M, Freidlin B, Yu R, Li M, Simon R. Methods for assessing reproducibility of clustering patterns observed in analyses of microarray data. 2002, 18:1462-1469. Oxford Univ Press.
-
(2002)
, vol.18
, pp. 1462-1469
-
-
McShane, L.1
Radmacher, M.2
Freidlin, B.3
Yu, R.4
Li, M.5
Simon, R.6
-
11
-
-
33745612095
-
Pvclust: an R package for assessing the uncertainty in hierarchical clustering
-
10.1093/bioinformatics/btl117, 16595560
-
Suzuki R, Shimodaira H. Pvclust: an R package for assessing the uncertainty in hierarchical clustering. Bioinformatics 2006, 22(12):1540-1542. 10.1093/bioinformatics/btl117, 16595560.
-
(2006)
Bioinformatics
, vol.22
, Issue.12
, pp. 1540-1542
-
-
Suzuki, R.1
Shimodaira, H.2
-
12
-
-
33748578365
-
Molecular classification of breast cancer: limitations and potential
-
10.1634/theoncologist.11-8-868, 16951390
-
Pusztai L, Mazouni C, Anderson K, Wu Y, Symmans WF. Molecular classification of breast cancer: limitations and potential. Oncologist 2006, 11(8):868-877. 10.1634/theoncologist.11-8-868, 16951390.
-
(2006)
Oncologist
, vol.11
, Issue.8
, pp. 868-877
-
-
Pusztai, L.1
Mazouni, C.2
Anderson, K.3
Wu, Y.4
Symmans, W.F.5
-
15
-
-
0004185151
-
Clustering algorithms
-
New York,: Wiley
-
Hartigan JA. Clustering algorithms. 1975, New York,: Wiley.
-
(1975)
-
-
Hartigan, J.A.1
-
17
-
-
0242690489
-
Discovering local structure in gene expression data: the order-preserving submatrix problem
-
10.1089/10665270360688075, 12935334
-
Ben-Dor A, Chor B, Karp R, Yakhini Z. Discovering local structure in gene expression data: the order-preserving submatrix problem. Journal of Computational Biology 2003, 10(3-4):373-384. 10.1089/10665270360688075, 12935334.
-
(2003)
Journal of Computational Biology
, vol.10
, Issue.3-4
, pp. 373-384
-
-
Ben-Dor, A.1
Chor, B.2
Karp, R.3
Yakhini, Z.4
-
18
-
-
11244306358
-
Discovering statistically significant biclusters in gene expression data
-
Tanay A, Sharan R, Shamir R. Discovering statistically significant biclusters in gene expression data. Bioinformatics 2002, 18(Suppl 1):S136-S144.
-
(2002)
Bioinformatics
, vol.18
, Issue.SUPPL 1
-
-
Tanay, A.1
Sharan, R.2
Shamir, R.3
-
21
-
-
0003603813
-
Computers and Intractability: A Guide to the Theory of NP-Completeness
-
San Francisco: WH Freeman
-
Garey M, Johnson D. Computers and Intractability: A Guide to the Theory of NP-Completeness. 1979, San Francisco: WH Freeman.
-
(1979)
-
-
Garey, M.1
Johnson, D.2
-
23
-
-
33751208636
-
Analysis of oncogenic signaling networks in glioblastoma identifies ASPM as a molecular target
-
Horvath S, Zhang B, Carlson M, Lu K, Zhu S, Felciano R, Laurance M, Zhao W, Qi S, Chen Z. Analysis of oncogenic signaling networks in glioblastoma identifies ASPM as a molecular target. Proceedings of the National Academy of Sciences 2006, 103(46):17402.
-
(2006)
Proceedings of the National Academy of Sciences
, vol.103
, Issue.46
, pp. 17402
-
-
Horvath, S.1
Zhang, B.2
Carlson, M.3
Lu, K.4
Zhu, S.5
Felciano, R.6
Laurance, M.7
Zhao, W.8
Qi, S.9
Chen, Z.10
-
24
-
-
0037137519
-
A gene-expression signature as a predictor of survival in breast cancer
-
10.1056/NEJMoa021967, 12490681
-
van de Vijver MJ, He YD, van't Veer LJ, Dai H, Hart AA, Voskuil DW, Schreiber GJ, Peterse JL, Roberts C, Marton MJ, et al. A gene-expression signature as a predictor of survival in breast cancer. N Engl J Med 2002, 347(25):1999-2009. 10.1056/NEJMoa021967, 12490681.
-
(2002)
N Engl J Med
, vol.347
, Issue.25
, pp. 1999-2009
-
-
van de Vijver, M.J.1
He, Y.D.2
van't Veer, L.J.3
Dai, H.4
Hart, A.A.5
Voskuil, D.W.6
Schreiber, G.J.7
Peterse, J.L.8
Roberts, C.9
Marton, M.J.10
-
25
-
-
26444546442
-
An expression signature for p53 status in human breast cancer predicts mutation status, transcriptional effects, and patient survival
-
10.1073/pnas.0506230102, 1197273, 16141321
-
Miller LD, Smeds J, George J, Vega VB, Vergara L, Ploner A, Pawitan Y, Hall P, Klaar S, Liu ET, et al. An expression signature for p53 status in human breast cancer predicts mutation status, transcriptional effects, and patient survival. Proc Natl Acad Sci USA 2005, 102(38):13550-13555. 10.1073/pnas.0506230102, 1197273, 16141321.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, Issue.38
, pp. 13550-13555
-
-
Miller, L.D.1
Smeds, J.2
George, J.3
Vega, V.B.4
Vergara, L.5
Ploner, A.6
Pawitan, Y.7
Hall, P.8
Klaar, S.9
Liu, E.T.10
-
26
-
-
9444225935
-
Java Treeview--extensible visualization of microarray data
-
10.1093/bioinformatics/bth349, 15180930
-
Saldanha AJ. Java Treeview--extensible visualization of microarray data. Bioinformatics 2004, 20(17):3246-3248. 10.1093/bioinformatics/bth349, 15180930.
-
(2004)
Bioinformatics
, vol.20
, Issue.17
, pp. 3246-3248
-
-
Saldanha, A.J.1
-
27
-
-
3142756502
-
Open source clustering software
-
10.1093/bioinformatics/bth078, 14871861
-
de Hoon M, Imoto S, Nolan J, Miyano S. Open source clustering software. Bioinformatics 2004, 20(9):1453. 10.1093/bioinformatics/bth078, 14871861.
-
(2004)
Bioinformatics
, vol.20
, Issue.9
, pp. 1453
-
-
de Hoon, M.1
Imoto, S.2
Nolan, J.3
Miyano, S.4
-
28
-
-
34447632167
-
Gene expression profiling spares early breast cancer patients from adjuvant therapy: derived and validated in two population-based cohorts
-
10.1186/bcr1325, 16280042
-
Pawitan Y, Bjohle J, Amler L, Borg A, Egyhazi S, Hall P, Han X, Holmberg L, Huang F, Klaar S. Gene expression profiling spares early breast cancer patients from adjuvant therapy: derived and validated in two population-based cohorts. Breast Cancer Res 2005, 7(6):R953-R964. 10.1186/bcr1325, 16280042.
-
(2005)
Breast Cancer Res
, vol.7
, Issue.6
-
-
Pawitan, Y.1
Bjohle, J.2
Amler, L.3
Borg, A.4
Egyhazi, S.5
Hall, P.6
Han, X.7
Holmberg, L.8
Huang, F.9
Klaar, S.10
-
29
-
-
13844310310
-
Gene-expression profiles to predict distant metastasis of lymph-node-negative primary breast cancer
-
Wang Y, Klijn J, Zhang Y, Sieuwerts A, Look M, Yang F, Talantov D, Timmermans M, Meijer-van Gelder M, Yu J. Gene-expression profiles to predict distant metastasis of lymph-node-negative primary breast cancer. The Lancet 2005, 365(9460):671-679.
-
(2005)
The Lancet
, vol.365
, Issue.9460
, pp. 671-679
-
-
Wang, Y.1
Klijn, J.2
Zhang, Y.3
Sieuwerts, A.4
Look, M.5
Yang, F.6
Talantov, D.7
Timmermans, M.8
Meijer-van Gelder, M.9
Yu, J.10
-
30
-
-
34250652449
-
Strong time dependence of the 76-gene prognostic signature for node-negative breast cancer patients in the TRANSBIG multicenter independent validation series
-
10.1158/1078-0432.CCR-06-2765, 17545524
-
Desmedt C, Piette F, Loi S, Wang Y, Lallemand F, Haibe-Kains B, Viale G, Delorenzi M, Zhang Y, d'Assignies MS, et al. Strong time dependence of the 76-gene prognostic signature for node-negative breast cancer patients in the TRANSBIG multicenter independent validation series. Clin Cancer Res 2007, 13(11):3207-3214. 10.1158/1078-0432.CCR-06-2765, 17545524.
-
(2007)
Clin Cancer Res
, vol.13
, Issue.11
, pp. 3207-3214
-
-
Desmedt, C.1
Piette, F.2
Loi, S.3
Wang, Y.4
Lallemand, F.5
Haibe-Kains, B.6
Viale, G.7
Delorenzi, M.8
Zhang, Y.9
d'Assignies, M.S.10
-
31
-
-
77956556294
-
-
Gene expression omnibus (GEO)
-
Gene expression omnibus (GEO) Gene expression omnibus (GEO)., http://www.ncbi.nlm.nih.gov/geo/
-
-
-
-
32
-
-
20144386127
-
Robustness, scalability, and integration of a wound-response gene expression signature in predicting breast cancer survival
-
Website companion for, 10.1073/pnas.0409462102, 15701700
-
Chang HY, Nuyten DS, Sneddon JB, Hastie T, Tibshirani R, Sorlie T, Dai H, He YD, van't Veer LJ, Bartelink H, et al. Robustness, scalability, and integration of a wound-response gene expression signature in predicting breast cancer survival. Proc Natl Acad Sci USA 2005, 102(10):3738-3743. Website companion for, 10.1073/pnas.0409462102, 15701700., http://microarray-pubs.stanford.edu/wound_NKI/
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, Issue.10
, pp. 3738-3743
-
-
Chang, H.Y.1
Nuyten, D.S.2
Sneddon, J.B.3
Hastie, T.4
Tibshirani, R.5
Sorlie, T.6
Dai, H.7
He, Y.D.8
van't Veer, L.J.9
Bartelink, H.10
-
33
-
-
19344363035
-
Gene expression signature of fibroblast serum response predicts human cancer progression: similarities between tumors and wounds
-
10.1371/journal.pbio.0020007, 314300, 14737219
-
Chang HY, Sneddon JB, Alizadeh AA, Sood R, West RB, Montgomery K, Chi JT, van de Rijn M, Botstein D, Brown PO. Gene expression signature of fibroblast serum response predicts human cancer progression: similarities between tumors and wounds. PLoS Biol 2004, 2(2):E7. 10.1371/journal.pbio.0020007, 314300, 14737219.
-
(2004)
PLoS Biol
, vol.2
, Issue.2
-
-
Chang, H.Y.1
Sneddon, J.B.2
Alizadeh, A.A.3
Sood, R.4
West, R.B.5
Montgomery, K.6
Chi, J.T.7
van de Rijn, M.8
Botstein, D.9
Brown, P.O.10
-
34
-
-
20144386127
-
Robustness, scalability, and integration of a wound-response gene expression signature in predicting breast cancer survival
-
10.1073/pnas.0409462102, 548329, 15701700
-
Chang HY, Nuyten DS, Sneddon JB, Hastie T, Tibshirani R, Sorlie T, Dai H, He YD, van't Veer LJ, Bartelink H, et al. Robustness, scalability, and integration of a wound-response gene expression signature in predicting breast cancer survival. Proc Natl Acad Sci USA 2005, 102(10):3738-3743. 10.1073/pnas.0409462102, 548329, 15701700.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, Issue.10
, pp. 3738-3743
-
-
Chang, H.Y.1
Nuyten, D.S.2
Sneddon, J.B.3
Hastie, T.4
Tibshirani, R.5
Sorlie, T.6
Dai, H.7
He, Y.D.8
van't Veer, L.J.9
Bartelink, H.10
-
35
-
-
0034960264
-
Missing value estimation methods for DNA microarrays
-
Oxford Univ Press
-
Troyanskaya O, Cantor M, Sherlock G, Brown P, Hastie T, Tibshirani R, Botstein D, Altman R. Missing value estimation methods for DNA microarrays. 2001, 17:520-525. Oxford Univ Press.
-
(2001)
, vol.17
, pp. 520-525
-
-
Troyanskaya, O.1
Cantor, M.2
Sherlock, G.3
Brown, P.4
Hastie, T.5
Tibshirani, R.6
Botstein, D.7
Altman, R.8
-
36
-
-
0037478605
-
Repeated observation of breast tumor subtypes in independent gene expression data sets
-
Sorlie T, Tibshirani R, Parker J, Hastie T, Marron J, Nobel A, Deng S, Johnsen H, Pesich R, Geisler S. Repeated observation of breast tumor subtypes in independent gene expression data sets. Proceedings of the National Academy of Sciences 2003, 100(14):8418-8423.
-
(2003)
Proceedings of the National Academy of Sciences
, vol.100
, Issue.14
, pp. 8418-8423
-
-
Sorlie, T.1
Tibshirani, R.2
Parker, J.3
Hastie, T.4
Marron, J.5
Nobel, A.6
Deng, S.7
Johnsen, H.8
Pesich, R.9
Geisler, S.10
-
37
-
-
0042838307
-
Breast cancer classification and prognosis based on gene expression profiles from a population-based study
-
Sotiriou C, Neo S, McShane L, Korn E, Long P, Jazaeri A, Martiat P, Fox S, Harris A, Liu E. Breast cancer classification and prognosis based on gene expression profiles from a population-based study. Proceedings of the National Academy of Sciences 2003, 100(18):10393-10398.
-
(2003)
Proceedings of the National Academy of Sciences
, vol.100
, Issue.18
, pp. 10393-10398
-
-
Sotiriou, C.1
Neo, S.2
McShane, L.3
Korn, E.4
Long, P.5
Jazaeri, A.6
Martiat, P.7
Fox, S.8
Harris, A.9
Liu, E.10
-
38
-
-
11144355581
-
Identification and validation of an ERBB2 gene expression signature in breast cancers
-
10.1038/sj.onc.1207361, 14743203
-
Bertucci F, Borie N, Ginestier C, Groulet A, Charafe-Jauffret E, Adelaide J, Geneix J, Bachelart L, Finetti P, Koki A, et al. Identification and validation of an ERBB2 gene expression signature in breast cancers. Oncogene 2004, 23(14):2564-2575. 10.1038/sj.onc.1207361, 14743203.
-
(2004)
Oncogene
, vol.23
, Issue.14
, pp. 2564-2575
-
-
Bertucci, F.1
Borie, N.2
Ginestier, C.3
Groulet, A.4
Charafe-Jauffret, E.5
Adelaide, J.6
Geneix, J.7
Bachelart, L.8
Finetti, P.9
Koki, A.10
-
39
-
-
33144462268
-
Gene expression profiling in breast cancer: understanding the molecular basis of histologic grade to improve prognosis
-
10.1093/jnci/djj052, 16478745
-
Sotiriou C, Wirapati P, Loi S, Harris A, Fox S, Smeds J, Nordgren H, Farmer P, Praz V, Haibe-Kains B, et al. Gene expression profiling in breast cancer: understanding the molecular basis of histologic grade to improve prognosis. J Natl Cancer Inst 2006, 98(4):262-272. 10.1093/jnci/djj052, 16478745.
-
(2006)
J Natl Cancer Inst
, vol.98
, Issue.4
, pp. 262-272
-
-
Sotiriou, C.1
Wirapati, P.2
Loi, S.3
Harris, A.4
Fox, S.5
Smeds, J.6
Nordgren, H.7
Farmer, P.8
Praz, V.9
Haibe-Kains, B.10
-
40
-
-
20144374709
-
A cell proliferation signature is a marker of extremely poor outcome in a subpopulation of breast cancer patients
-
10.1158/0008-5472.CAN-04-3953, 15899795
-
Dai H, van't Veer L, Lamb J, He YD, Mao M, Fine BM, Bernards R, van de Vijver M, Deutsch P, Sachs A, et al. A cell proliferation signature is a marker of extremely poor outcome in a subpopulation of breast cancer patients. Cancer Res 2005, 65(10):4059-4066. 10.1158/0008-5472.CAN-04-3953, 15899795.
-
(2005)
Cancer Res
, vol.65
, Issue.10
, pp. 4059-4066
-
-
Dai, H.1
van't Veer, L.2
Lamb, J.3
He, Y.D.4
Mao, M.5
Fine, B.M.6
Bernards, R.7
van de Vijver, M.8
Deutsch, P.9
Sachs, A.10
-
41
-
-
33749644703
-
Metallothionein as a prognostic biomarker in breast cancer
-
Bay BH, Jin R, Huang J, Tan PH. Metallothionein as a prognostic biomarker in breast cancer. Exp Biol Med (Maywood) 2006, 231(9):1516-1521.
-
(2006)
Exp Biol Med (Maywood)
, vol.231
, Issue.9
, pp. 1516-1521
-
-
Bay, B.H.1
Jin, R.2
Huang, J.3
Tan, P.H.4
-
42
-
-
62849095868
-
Over-expression of metallothionein predicts chemoresistance in breast cancer
-
10.1002/path.2489, 19116991
-
Yap X, Tan HY, Huang J, Lai Y, Yip GW, Tan PH, Bay BH. Over-expression of metallothionein predicts chemoresistance in breast cancer. J Pathol 2009, 217(4):563-570. 10.1002/path.2489, 19116991.
-
(2009)
J Pathol
, vol.217
, Issue.4
, pp. 563-570
-
-
Yap, X.1
Tan, H.Y.2
Huang, J.3
Lai, Y.4
Yip, G.W.5
Tan, P.H.6
Bay, B.H.7
-
43
-
-
33748082671
-
Prognosis and gene expression profiling of 20q13-amplified breast cancers
-
10.1158/1078-0432.CCR-05-2339, 16899599
-
Ginestier C, Cervera N, Finetti P, Esteyries S, Esterni B, Adelaide J, Xerri L, Viens P, Jacquemier J, Charafe-Jauffret E, et al. Prognosis and gene expression profiling of 20q13-amplified breast cancers. Clin Cancer Res 2006, 12(15):4533-4544. 10.1158/1078-0432.CCR-05-2339, 16899599.
-
(2006)
Clin Cancer Res
, vol.12
, Issue.15
, pp. 4533-4544
-
-
Ginestier, C.1
Cervera, N.2
Finetti, P.3
Esteyries, S.4
Esterni, B.5
Adelaide, J.6
Xerri, L.7
Viens, P.8
Jacquemier, J.9
Charafe-Jauffret, E.10
-
44
-
-
33646253192
-
Combined cDNA array comparative genomic hybridization and serial analysis of gene expression analysis of breast tumor progression
-
10.1158/0008-5472.CAN-05-4083, 16618726
-
Yao J, Weremowicz S, Feng B, Gentleman RC, Marks JR, Gelman R, Brennan C, Polyak K. Combined cDNA array comparative genomic hybridization and serial analysis of gene expression analysis of breast tumor progression. Cancer Res 2006, 66(8):4065-4078. 10.1158/0008-5472.CAN-05-4083, 16618726.
-
(2006)
Cancer Res
, vol.66
, Issue.8
, pp. 4065-4078
-
-
Yao, J.1
Weremowicz, S.2
Feng, B.3
Gentleman, R.C.4
Marks, J.R.5
Gelman, R.6
Brennan, C.7
Polyak, K.8
-
45
-
-
0037738856
-
Genome amplification of chromosome 20 in breast cancer
-
10.1023/A:1023085825042, 12755492
-
Hodgson JG, Chin K, Collins C, Gray JW. Genome amplification of chromosome 20 in breast cancer. Breast Cancer Res Treat 2003, 78(3):337-345. 10.1023/A:1023085825042, 12755492.
-
(2003)
Breast Cancer Res Treat
, vol.78
, Issue.3
, pp. 337-345
-
-
Hodgson, J.G.1
Chin, K.2
Collins, C.3
Gray, J.W.4
-
46
-
-
21244499405
-
GAPDH as a housekeeping gene: analysis of GAPDH mRNA expression in a panel of 72 human tissues
-
10.1152/physiolgenomics.00025.2005, 15769908
-
Barber RD, Harmer DW, Coleman RA, Clark BJ. GAPDH as a housekeeping gene: analysis of GAPDH mRNA expression in a panel of 72 human tissues. Physiol Genomics 2005, 21(3):389-395. 10.1152/physiolgenomics.00025.2005, 15769908.
-
(2005)
Physiol Genomics
, vol.21
, Issue.3
, pp. 389-395
-
-
Barber, R.D.1
Harmer, D.W.2
Coleman, R.A.3
Clark, B.J.4
-
47
-
-
19944422061
-
A multigene assay to predict recurrence of tamoxifen-treated, node-negative breast cancer
-
10.1056/NEJMoa041588, 15591335
-
Paik S, Shak S, Tang G, Kim C, Baker J, Cronin M, Baehner FL, Walker MG, Watson D, Park T, et al. A multigene assay to predict recurrence of tamoxifen-treated, node-negative breast cancer. N Engl J Med 2004, 351(27):2817-2826. 10.1056/NEJMoa041588, 15591335.
-
(2004)
N Engl J Med
, vol.351
, Issue.27
, pp. 2817-2826
-
-
Paik, S.1
Shak, S.2
Tang, G.3
Kim, C.4
Baker, J.5
Cronin, M.6
Baehner, F.L.7
Walker, M.G.8
Watson, D.9
Park, T.10
-
48
-
-
34447132081
-
Development and clinical utility of a 21-gene recurrence score prognostic assay in patients with early breast cancer treated with tamoxifen
-
10.1634/theoncologist.12-6-631, 17602054
-
Paik S. Development and clinical utility of a 21-gene recurrence score prognostic assay in patients with early breast cancer treated with tamoxifen. Oncologist 2007, 12(6):631-635. 10.1634/theoncologist.12-6-631, 17602054.
-
(2007)
Oncologist
, vol.12
, Issue.6
, pp. 631-635
-
-
Paik, S.1
-
49
-
-
0037168127
-
Novel candidate tumor marker genes for lung adenocarcinoma
-
10.1038/sj.onc.1205953, 12386823
-
Wang KK, Liu N, Radulovich N, Wigle DA, Johnston MR, Shepherd FA, Minden MD, Tsao MS. Novel candidate tumor marker genes for lung adenocarcinoma. Oncogene 2002, 21(49):7598-7604. 10.1038/sj.onc.1205953, 12386823.
-
(2002)
Oncogene
, vol.21
, Issue.49
, pp. 7598-7604
-
-
Wang, K.K.1
Liu, N.2
Radulovich, N.3
Wigle, D.A.4
Johnston, M.R.5
Shepherd, F.A.6
Minden, M.D.7
Tsao, M.S.8
-
50
-
-
0343619342
-
Glyceraldehyde-3-phosphate dehydrogenase gene expression in human breast cancer
-
10.1016/S0959-8049(00)00051-4, 10885609
-
Revillion F, Pawlowski V, Hornez L, Peyrat JP. Glyceraldehyde-3-phosphate dehydrogenase gene expression in human breast cancer. Eur J Cancer 2000, 36(8):1038-1042. 10.1016/S0959-8049(00)00051-4, 10885609.
-
(2000)
Eur J Cancer
, vol.36
, Issue.8
, pp. 1038-1042
-
-
Revillion, F.1
Pawlowski, V.2
Hornez, L.3
Peyrat, J.P.4
-
51
-
-
33744795451
-
The effect of bisphosphonates on gene expression: GAPDH as a housekeeping or a new target gene?
-
10.1186/1471-2407-6-49, 1473200, 16515701
-
Valenti MT, Bertoldo F, Dalle Carbonare L, Azzarello G, Zenari S, Zanatta M, Balducci E, Vinante O, Lo Cascio V. The effect of bisphosphonates on gene expression: GAPDH as a housekeeping or a new target gene?. BMC Cancer 2006, 6:49. 10.1186/1471-2407-6-49, 1473200, 16515701.
-
(2006)
BMC Cancer
, vol.6
, pp. 49
-
-
Valenti, M.T.1
Bertoldo, F.2
Dalle Carbonare, L.3
Azzarello, G.4
Zenari, S.5
Zanatta, M.6
Balducci, E.7
Vinante, O.8
Lo Cascio, V.9
-
52
-
-
34447632167
-
Gene expression profiling spares early breast cancer patients from adjuvant therapy: derived and validated in two population-based cohorts
-
10.1186/bcr1325, 1410752, 16280042
-
Pawitan Y, Bjohle J, Amler L, Borg AL, Egyhazi S, Hall P, Han X, Holmberg L, Huang F, Klaar S, et al. Gene expression profiling spares early breast cancer patients from adjuvant therapy: derived and validated in two population-based cohorts. Breast Cancer Res 2005, 7(6):R953-964. 10.1186/bcr1325, 1410752, 16280042.
-
(2005)
Breast Cancer Res
, vol.7
, Issue.6
-
-
Pawitan, Y.1
Bjohle, J.2
Amler, L.3
Borg, A.L.4
Egyhazi, S.5
Hall, P.6
Han, X.7
Holmberg, L.8
Huang, F.9
Klaar, S.10
-
53
-
-
65549101723
-
Sp1 and AP-1 regulate expression of the human gene VIL2 in esophageal carcinoma cells
-
10.1074/jbc.M809734200, 2658093, 19164283
-
Gao SY, Li EM, Cui L, Lu XF, Meng LY, Yuan HM, Xie JJ, Du ZP, Pang JX, Xu LY. Sp1 and AP-1 regulate expression of the human gene VIL2 in esophageal carcinoma cells. J Biol Chem 2009, 284(12):7995-8004. 10.1074/jbc.M809734200, 2658093, 19164283.
-
(2009)
J Biol Chem
, vol.284
, Issue.12
, pp. 7995-8004
-
-
Gao, S.Y.1
Li, E.M.2
Cui, L.3
Lu, X.F.4
Meng, L.Y.5
Yuan, H.M.6
Xie, J.J.7
Du, Z.P.8
Pang, J.X.9
Xu, L.Y.10
-
54
-
-
67651162151
-
High level of ezrin expression in colorectal cancer tissues is closely related to tumor malignancy
-
10.3748/wjg.15.2016, 2675094, 19399936
-
Wang HJ, Zhu JS, Zhang Q, Sun Q, Guo H. High level of ezrin expression in colorectal cancer tissues is closely related to tumor malignancy. World J Gastroenterol 2009, 15(16):2016-2019. 10.3748/wjg.15.2016, 2675094, 19399936.
-
(2009)
World J Gastroenterol
, vol.15
, Issue.16
, pp. 2016-2019
-
-
Wang, H.J.1
Zhu, J.S.2
Zhang, Q.3
Sun, Q.4
Guo, H.5
-
55
-
-
33747169628
-
Ezrin promotes ovarian carcinoma cell invasion and its retained expression predicts poor prognosis in ovarian carcinoma
-
10.1097/01.pgp.0000185410.39050.ac, 16633060
-
Kobel M, Gradhand E, Zeng K, Schmitt WD, Kriese K, Lantzsch T, Wolters M, Dittmer J, Strauss HG, Thomssen C, et al. Ezrin promotes ovarian carcinoma cell invasion and its retained expression predicts poor prognosis in ovarian carcinoma. Int J Gynecol Pathol 2006, 25(2):121-130. 10.1097/01.pgp.0000185410.39050.ac, 16633060.
-
(2006)
Int J Gynecol Pathol
, vol.25
, Issue.2
, pp. 121-130
-
-
Kobel, M.1
Gradhand, E.2
Zeng, K.3
Schmitt, W.D.4
Kriese, K.5
Lantzsch, T.6
Wolters, M.7
Dittmer, J.8
Strauss, H.G.9
Thomssen, C.10
-
56
-
-
30644462746
-
The membrane cytoskeletal crosslinker ezrin is required for metastasis of breast carcinoma cells
-
10.1186/bcr1006, 1143558, 15987432
-
Elliott BE, Meens JA, SenGupta SK, Louvard D, Arpin M. The membrane cytoskeletal crosslinker ezrin is required for metastasis of breast carcinoma cells. Breast Cancer Res 2005, 7(3):R365-373. 10.1186/bcr1006, 1143558, 15987432.
-
(2005)
Breast Cancer Res
, vol.7
, Issue.3
-
-
Elliott, B.E.1
Meens, J.A.2
SenGupta, S.K.3
Louvard, D.4
Arpin, M.5
-
57
-
-
38949088292
-
Ezrin silencing by small hairpin RNA reverses metastatic behaviors of human breast cancer cells
-
10.1016/j.canlet.2007.11.018, 18155831
-
Li Q, Wu M, Wang H, Xu G, Zhu T, Zhang Y, Liu P, Song A, Gang C, Han Z, et al. Ezrin silencing by small hairpin RNA reverses metastatic behaviors of human breast cancer cells. Cancer Lett 2008, 261(1):55-63. 10.1016/j.canlet.2007.11.018, 18155831.
-
(2008)
Cancer Lett
, vol.261
, Issue.1
, pp. 55-63
-
-
Li, Q.1
Wu, M.2
Wang, H.3
Xu, G.4
Zhu, T.5
Zhang, Y.6
Liu, P.7
Song, A.8
Gang, C.9
Han, Z.10
-
58
-
-
34247603150
-
Expression of the cytoskeleton linker protein ezrin in human cancers
-
10.1007/s10585-006-9050-x, 17370041
-
Bruce B, Khanna G, Ren L, Landberg G, Jirstrom K, Powell C, Borczuk A, Keller ET, Wojno KJ, Meltzer P, et al. Expression of the cytoskeleton linker protein ezrin in human cancers. Clin Exp Metastasis 2007, 24(2):69-78. 10.1007/s10585-006-9050-x, 17370041.
-
(2007)
Clin Exp Metastasis
, vol.24
, Issue.2
, pp. 69-78
-
-
Bruce, B.1
Khanna, G.2
Ren, L.3
Landberg, G.4
Jirstrom, K.5
Powell, C.6
Borczuk, A.7
Keller, E.T.8
Wojno, K.J.9
Meltzer, P.10
-
59
-
-
77956550115
-
ARF1 controls the activation of the PI3K pathway to regulate EGF dependent growth and migration of breast cancer cells
-
M803603200v803603201, 2662303, 18990689
-
Boulay P, Cotton M, Melancon P, Claing A. ARF1 controls the activation of the PI3K pathway to regulate EGF dependent growth and migration of breast cancer cells. Journal of Biological Chemistry 2008, M803603200v803603201, 2662303, 18990689.
-
(2008)
Journal of Biological Chemistry
-
-
Boulay, P.1
Cotton, M.2
Melancon, P.3
Claing, A.4
-
60
-
-
0035881617
-
Estrogen receptor status in breast cancer is associated with remarkably distinct gene expression patterns
-
Gruvberger S, Ringner M, Chen Y, Panavally S, Saal LH, Borg A, Ferno M, Peterson C, Meltzer PS. Estrogen receptor status in breast cancer is associated with remarkably distinct gene expression patterns. Cancer Res 2001, 61(16):5979-5984.
-
(2001)
Cancer Res
, vol.61
, Issue.16
, pp. 5979-5984
-
-
Gruvberger, S.1
Ringner, M.2
Chen, Y.3
Panavally, S.4
Saal, L.H.5
Borg, A.6
Ferno, M.7
Peterson, C.8
Meltzer, P.S.9
-
61
-
-
34547691136
-
FOXA1 expression in breast cancer--correlation with luminal subtype A and survival
-
10.1158/1078-0432.CCR-07-0122, 17671124
-
Badve S, Turbin D, Thorat MA, Morimiya A, Nielsen TO, Perou CM, Dunn S, Huntsman DG, Nakshatri H. FOXA1 expression in breast cancer--correlation with luminal subtype A and survival. Clin Cancer Res 2007, 13(15 Pt 1):4415-4421. 10.1158/1078-0432.CCR-07-0122, 17671124.
-
(2007)
Clin Cancer Res
, vol.13
, Issue.15 PART 1
, pp. 4415-4421
-
-
Badve, S.1
Turbin, D.2
Thorat, M.A.3
Morimiya, A.4
Nielsen, T.O.5
Perou, C.M.6
Dunn, S.7
Huntsman, D.G.8
Nakshatri, H.9
-
62
-
-
40449117593
-
Forkhead box A1 expression in breast cancer is associated with luminal subtype and good prognosis
-
10.1136/jcp.2007.052431, 18037662
-
Thorat MA, Marchio C, Morimiya A, Savage K, Nakshatri H, Reis-Filho JS, Badve S. Forkhead box A1 expression in breast cancer is associated with luminal subtype and good prognosis. J Clin Pathol 2008, 61(3):327-332. 10.1136/jcp.2007.052431, 18037662.
-
(2008)
J Clin Pathol
, vol.61
, Issue.3
, pp. 327-332
-
-
Thorat, M.A.1
Marchio, C.2
Morimiya, A.3
Savage, K.4
Nakshatri, H.5
Reis-Filho, J.S.6
Badve, S.7
-
63
-
-
74049137968
-
Expression of FOXA1 and GATA-3 in breast cancer: the prognostic significance in hormone receptor-negative tumours
-
10.1186/bcr2327, 2716509, 19549328
-
Albergaria A, Paredes J, Sousa B, Milanezi F, Carneiro V, Bastos J, Costa S, Vieira D, Lopes N, Lam EW, et al. Expression of FOXA1 and GATA-3 in breast cancer: the prognostic significance in hormone receptor-negative tumours. Breast Cancer Res 2009, 11(3):R40. 10.1186/bcr2327, 2716509, 19549328.
-
(2009)
Breast Cancer Res
, vol.11
, Issue.3
-
-
Albergaria, A.1
Paredes, J.2
Sousa, B.3
Milanezi, F.4
Carneiro, V.5
Bastos, J.6
Costa, S.7
Vieira, D.8
Lopes, N.9
Lam, E.W.10
-
64
-
-
22144486551
-
Chromosome-wide mapping of estrogen receptor binding reveals long-range regulation requiring the forkhead protein FoxA1
-
10.1016/j.cell.2005.05.008, 16009131
-
Carroll JS, Liu XS, Brodsky AS, Li W, Meyer CA, Szary AJ, Eeckhoute J, Shao W, Hestermann EV, Geistlinger TR, et al. Chromosome-wide mapping of estrogen receptor binding reveals long-range regulation requiring the forkhead protein FoxA1. Cell 2005, 122(1):33-43. 10.1016/j.cell.2005.05.008, 16009131.
-
(2005)
Cell
, vol.122
, Issue.1
, pp. 33-43
-
-
Carroll, J.S.1
Liu, X.S.2
Brodsky, A.S.3
Li, W.4
Meyer, C.A.5
Szary, A.J.6
Eeckhoute, J.7
Shao, W.8
Hestermann, E.V.9
Geistlinger, T.R.10
-
65
-
-
33746600263
-
Estrogen receptor target gene: an evolving concept
-
10.1210/me.2005-0334, 16396959
-
Carroll JS, Brown M. Estrogen receptor target gene: an evolving concept. Mol Endocrinol 2006, 20(8):1707-1714. 10.1210/me.2005-0334, 16396959.
-
(2006)
Mol Endocrinol
, vol.20
, Issue.8
, pp. 1707-1714
-
-
Carroll, J.S.1
Brown, M.2
-
66
-
-
33745603978
-
An estrogen receptor-negative breast cancer subset characterized by a hormonally regulated transcriptional program and response to androgen
-
10.1038/sj.onc.1209415, 16491124
-
Doane AS, Danso M, Lal P, Donaton M, Zhang L, Hudis C, Gerald WL. An estrogen receptor-negative breast cancer subset characterized by a hormonally regulated transcriptional program and response to androgen. Oncogene 2006, 25(28):3994-4008. 10.1038/sj.onc.1209415, 16491124.
-
(2006)
Oncogene
, vol.25
, Issue.28
, pp. 3994-4008
-
-
Doane, A.S.1
Danso, M.2
Lal, P.3
Donaton, M.4
Zhang, L.5
Hudis, C.6
Gerald, W.L.7
-
67
-
-
33846804242
-
FOXA1: Growth inhibitor and a favorable prognostic factor in human breast cancer
-
Wolf I, Bose S, Williamson E, Miller C, Karlan B, Koeffler H. FOXA1: Growth inhibitor and a favorable prognostic factor in human breast cancer. International journal of cancer 2007, 120(5).
-
(2007)
International journal of cancer
, vol.120
, Issue.5
-
-
Wolf, I.1
Bose, S.2
Williamson, E.3
Miller, C.4
Karlan, B.5
Koeffler, H.6
-
68
-
-
0141681892
-
A comprehensive search for HNF-3alpha-regulated genes in mouse hepatoma cells by 60K cDNA microarray and chromatin immunoprecipitation/PCR analysis
-
10.1016/j.bbrc.2003.08.148, 14521963
-
Tomaru Y, Kondo S, Suzuki M, Hayashizaki Y. A comprehensive search for HNF-3alpha-regulated genes in mouse hepatoma cells by 60K cDNA microarray and chromatin immunoprecipitation/PCR analysis. Biochem Biophys Res Commun 2003, 310(2):667-674. 10.1016/j.bbrc.2003.08.148, 14521963.
-
(2003)
Biochem Biophys Res Commun
, vol.310
, Issue.2
, pp. 667-674
-
-
Tomaru, Y.1
Kondo, S.2
Suzuki, M.3
Hayashizaki, Y.4
-
69
-
-
32844463934
-
Drosophila caliban, a nuclear export mediator, can function as a tumor suppressor in human lung cancer cells
-
10.1038/sj.onc.1208962, 16103875
-
Bi X, Jones T, Abbasi F, Lee H, Stultz B, Hursh DA, Mortin MA. Drosophila caliban, a nuclear export mediator, can function as a tumor suppressor in human lung cancer cells. Oncogene 2005, 24(56):8229-8239. 10.1038/sj.onc.1208962, 16103875.
-
(2005)
Oncogene
, vol.24
, Issue.56
, pp. 8229-8239
-
-
Bi, X.1
Jones, T.2
Abbasi, F.3
Lee, H.4
Stultz, B.5
Hursh, D.A.6
Mortin, M.A.7
-
70
-
-
33645666218
-
Genomic and expression analysis of the 3q25-q26 amplification unit reveals TLOC1/SEC62 as a probable target gene in prostate cancer
-
10.1158/1541-7786.MCR-05-0165, 16547154
-
Jung V, Kindich R, Kamradt J, Jung M, Muller M, Schulz WA, Engers R, Unteregger G, Stockle M, Zimmermann R, et al. Genomic and expression analysis of the 3q25-q26 amplification unit reveals TLOC1/SEC62 as a probable target gene in prostate cancer. Mol Cancer Res 2006, 4(3):169-176. 10.1158/1541-7786.MCR-05-0165, 16547154.
-
(2006)
Mol Cancer Res
, vol.4
, Issue.3
, pp. 169-176
-
-
Jung, V.1
Kindich, R.2
Kamradt, J.3
Jung, M.4
Muller, M.5
Schulz, W.A.6
Engers, R.7
Unteregger, G.8
Stockle, M.9
Zimmermann, R.10
-
71
-
-
43049173659
-
High-resolution genomic and expression analyses of copy number alterations in breast tumors
-
10.1002/gcc.20558, 18335499
-
Haverty PM, Fridlyand J, Li L, Getz G, Beroukhim R, Lohr S, Wu TD, Cavet G, Zhang Z, Chant J. High-resolution genomic and expression analyses of copy number alterations in breast tumors. Genes Chromosomes Cancer 2008, 47(6):530-542. 10.1002/gcc.20558, 18335499.
-
(2008)
Genes Chromosomes Cancer
, vol.47
, Issue.6
, pp. 530-542
-
-
Haverty, P.M.1
Fridlyand, J.2
Li, L.3
Getz, G.4
Beroukhim, R.5
Lohr, S.6
Wu, T.D.7
Cavet, G.8
Zhang, Z.9
Chant, J.10
-
72
-
-
29944447205
-
Comprehensive profiling of 8p11-12 amplification in breast cancer
-
10.1158/1541-7786.MCR-05-0128, 16380503
-
Gelsi-Boyer V, Orsetti B, Cervera N, Finetti P, Sircoulomb F, Rouge C, Lasorsa L, Letessier A, Ginestier C, Monville F, et al. Comprehensive profiling of 8p11-12 amplification in breast cancer. Mol Cancer Res 2005, 3(12):655-667. 10.1158/1541-7786.MCR-05-0128, 16380503.
-
(2005)
Mol Cancer Res
, vol.3
, Issue.12
, pp. 655-667
-
-
Gelsi-Boyer, V.1
Orsetti, B.2
Cervera, N.3
Finetti, P.4
Sircoulomb, F.5
Rouge, C.6
Lasorsa, L.7
Letessier, A.8
Ginestier, C.9
Monville, F.10
-
73
-
-
13944263929
-
Visualizing chromosomes as transcriptome correlation maps: evidence of chromosomal domains containing co-expressed genes--a study of 130 invasive ductal breast carcinomas
-
10.1158/0008-5472.CAN-04-2706, 15735024
-
Reyal F, Stransky N, Bernard-Pierrot I, Vincent-Salomon A, de Rycke Y, Elvin P, Cassidy A, Graham A, Spraggon C, Desille Y, et al. Visualizing chromosomes as transcriptome correlation maps: evidence of chromosomal domains containing co-expressed genes--a study of 130 invasive ductal breast carcinomas. Cancer Res 2005, 65(4):1376-1383. 10.1158/0008-5472.CAN-04-2706, 15735024.
-
(2005)
Cancer Res
, vol.65
, Issue.4
, pp. 1376-1383
-
-
Reyal, F.1
Stransky, N.2
Bernard-Pierrot, I.3
Vincent-Salomon, A.4
de Rycke, Y.5
Elvin, P.6
Cassidy, A.7
Graham, A.8
Spraggon, C.9
Desille, Y.10
-
74
-
-
33846209170
-
Multiple interacting oncogenes on the 8p11-p12 amplicon in human breast cancer
-
10.1158/0008-5472.CAN-06-2946, 17178857
-
Yang ZQ, Streicher KL, Ray ME, Abrams J, Ethier SP. Multiple interacting oncogenes on the 8p11-p12 amplicon in human breast cancer. Cancer Res 2006, 66(24):11632-11643. 10.1158/0008-5472.CAN-06-2946, 17178857.
-
(2006)
Cancer Res
, vol.66
, Issue.24
, pp. 11632-11643
-
-
Yang, Z.Q.1
Streicher, K.L.2
Ray, M.E.3
Abrams, J.4
Ethier, S.P.5
-
75
-
-
52049083886
-
Characterization of the Recurrent 8p11-12 Amplicon Identifies PPAPDC1B, a Phosphatase Protein, as a New Therapeutic Target in Breast Cancer
-
10.1158/0008-5472.CAN-08-1360, 18757432
-
Bernard-Pierrot I, Gruel N, Stransky N, Vincent-Salomon A, Reyal F, Raynal V, Vallot C, Pierron G, Radvanyi F, Delattre O. Characterization of the Recurrent 8p11-12 Amplicon Identifies PPAPDC1B, a Phosphatase Protein, as a New Therapeutic Target in Breast Cancer. Cancer Research 2008, 68(17):7165. 10.1158/0008-5472.CAN-08-1360, 18757432.
-
(2008)
Cancer Research
, vol.68
, Issue.17
, pp. 7165
-
-
Bernard-Pierrot, I.1
Gruel, N.2
Stransky, N.3
Vincent-Salomon, A.4
Reyal, F.5
Raynal, V.6
Vallot, C.7
Pierron, G.8
Radvanyi, F.9
Delattre, O.10
-
76
-
-
33646390671
-
Gene expression profiling shows medullary breast cancer is a subgroup of basal breast cancers
-
10.1158/0008-5472.CAN-06-0031, 16651414
-
Bertucci F, Finetti P, Cervera N, Charafe-Jauffret E, Mamessier E, Adelaide J, Debono S, Houvenaeghel G, Maraninchi D, Viens P, et al. Gene expression profiling shows medullary breast cancer is a subgroup of basal breast cancers. Cancer Res 2006, 66(9):4636-4644. 10.1158/0008-5472.CAN-06-0031, 16651414.
-
(2006)
Cancer Res
, vol.66
, Issue.9
, pp. 4636-4644
-
-
Bertucci, F.1
Finetti, P.2
Cervera, N.3
Charafe-Jauffret, E.4
Mamessier, E.5
Adelaide, J.6
Debono, S.7
Houvenaeghel, G.8
Maraninchi, D.9
Viens, P.10
-
77
-
-
44949121510
-
Predicting prognosis using molecular profiling in estrogen receptor-positive breast cancer treated with tamoxifen
-
10.1186/1471-2164-9-239, 2423197, 18498629
-
Loi S, Haibe-Kains B, Desmedt C, Wirapati P, Lallemand F, Tutt AM, Gillet C, Ellis P, Ryder K, Reid JF, et al. Predicting prognosis using molecular profiling in estrogen receptor-positive breast cancer treated with tamoxifen. BMC Genomics 2008, 9:239. 10.1186/1471-2164-9-239, 2423197, 18498629.
-
(2008)
BMC Genomics
, vol.9
, pp. 239
-
-
Loi, S.1
Haibe-Kains, B.2
Desmedt, C.3
Wirapati, P.4
Lallemand, F.5
Tutt, A.M.6
Gillet, C.7
Ellis, P.8
Ryder, K.9
Reid, J.F.10
-
78
-
-
67651193848
-
T-cell metagene predicts a favorable prognosis in estrogen receptor-negative and HER2-positive breast cancers
-
10.1186/bcr2234, 2688939, 19272155
-
Rody A, Holtrich U, Pusztai L, Liedtke C, Gaetje R, Ruckhaeberle E, Solbach C, Hanker L, Ahr A, Metzler D, et al. T-cell metagene predicts a favorable prognosis in estrogen receptor-negative and HER2-positive breast cancers. Breast Cancer Res 2009, 11(2):R15. 10.1186/bcr2234, 2688939, 19272155.
-
(2009)
Breast Cancer Res
, vol.11
, Issue.2
-
-
Rody, A.1
Holtrich, U.2
Pusztai, L.3
Liedtke, C.4
Gaetje, R.5
Ruckhaeberle, E.6
Solbach, C.7
Hanker, L.8
Ahr, A.9
Metzler, D.10
-
79
-
-
44849101184
-
The humoral immune system has a key prognostic impact in node-negative breast cancer
-
10.1158/0008-5472.CAN-07-5206, 18593943
-
Schmidt M, Bohm D, von Torne C, Steiner E, Puhl A, Pilch H, Lehr HA, Hengstler JG, Kolbl H, Gehrmann M. The humoral immune system has a key prognostic impact in node-negative breast cancer. Cancer Res 2008, 68(13):5405-5413. 10.1158/0008-5472.CAN-07-5206, 18593943.
-
(2008)
Cancer Res
, vol.68
, Issue.13
, pp. 5405-5413
-
-
Schmidt, M.1
Bohm, D.2
von Torne, C.3
Steiner, E.4
Puhl, A.5
Pilch, H.6
Lehr, H.A.7
Hengstler, J.G.8
Kolbl, H.9
Gehrmann, M.10
-
80
-
-
67649421579
-
Effects of infiltrating lymphocytes and estrogen receptor on gene expression and prognosis in breast cancer
-
10.1007/s10549-008-0105-3, 18592372
-
Calabro A, Beissbarth T, Kuner R, Stojanov M, Benner A, Asslaber M, Ploner F, Zatloukal K, Samonigg H, Poustka A, et al. Effects of infiltrating lymphocytes and estrogen receptor on gene expression and prognosis in breast cancer. Breast Cancer Res Treat 2009, 116(1):69-77. 10.1007/s10549-008-0105-3, 18592372.
-
(2009)
Breast Cancer Res Treat
, vol.116
, Issue.1
, pp. 69-77
-
-
Calabro, A.1
Beissbarth, T.2
Kuner, R.3
Stojanov, M.4
Benner, A.5
Asslaber, M.6
Ploner, F.7
Zatloukal, K.8
Samonigg, H.9
Poustka, A.10
-
81
-
-
43249121177
-
Stromal gene expression predicts clinical outcome in breast cancer
-
10.1038/nm1764, 18438415
-
Finak G, Bertos N, Pepin F, Sadekova S, Souleimanova M, Zhao H, Chen H, Omeroglu G, Meterissian S, Omeroglu A, et al. Stromal gene expression predicts clinical outcome in breast cancer. Nat Med 2008, 14(5):518-527. 10.1038/nm1764, 18438415.
-
(2008)
Nat Med
, vol.14
, Issue.5
, pp. 518-527
-
-
Finak, G.1
Bertos, N.2
Pepin, F.3
Sadekova, S.4
Souleimanova, M.5
Zhao, H.6
Chen, H.7
Omeroglu, G.8
Meterissian, S.9
Omeroglu, A.10
-
82
-
-
38849160275
-
Characterization of heterotypic interaction effects in vitro to deconvolute global gene expression profiles in cancer
-
10.1186/gb-2007-8-9-r191, 2375029, 17868458
-
Buess M, Nuyten DS, Hastie T, Nielsen T, Pesich R, Brown PO. Characterization of heterotypic interaction effects in vitro to deconvolute global gene expression profiles in cancer. Genome Biol 2007, 8(9):R191. 10.1186/gb-2007-8-9-r191, 2375029, 17868458.
-
(2007)
Genome Biol
, vol.8
, Issue.9
-
-
Buess, M.1
Nuyten, D.S.2
Hastie, T.3
Nielsen, T.4
Pesich, R.5
Brown, P.O.6
-
83
-
-
58149481287
-
Breast cancer by proxy: can the microenvironment be both the cause and consequence?
-
10.1016/j.molmed.2008.11.001, 2746030, 19091631
-
Rønnov-Jessen L, Bissell M. Breast cancer by proxy: can the microenvironment be both the cause and consequence?. Trends in Molecular Medicine 2009, 15(1):5-13. 10.1016/j.molmed.2008.11.001, 2746030, 19091631.
-
(2009)
Trends in Molecular Medicine
, vol.15
, Issue.1
, pp. 5-13
-
-
Rønnov-Jessen, L.1
Bissell, M.2
-
84
-
-
22744445394
-
Determination of stromal signatures in breast carcinoma
-
10.1371/journal.pbio.0030187, 1088973,1088973, 15869330
-
West RB, Nuyten DS, Subramanian S, Nielsen TO, Corless CL, Rubin BP, Montgomery K, Zhu S, Patel R, Hernandez-Boussard T, et al. Determination of stromal signatures in breast carcinoma. PLoS Biol 2005, 3(6):e187. 10.1371/journal.pbio.0030187, 1088973,1088973, 15869330.
-
(2005)
PLoS Biol
, vol.3
, Issue.6
-
-
West, R.B.1
Nuyten, D.S.2
Subramanian, S.3
Nielsen, T.O.4
Corless, C.L.5
Rubin, B.P.6
Montgomery, K.7
Zhu, S.8
Patel, R.9
Hernandez-Boussard, T.10
-
85
-
-
34548779176
-
Experimental approaches to the study of cancer-stroma interactions: recent findings suggest a pivotal role for stroma in carcinogenesis
-
10.1038/labinvest.3700666, 17700561
-
West RB, van de Rijn M. Experimental approaches to the study of cancer-stroma interactions: recent findings suggest a pivotal role for stroma in carcinogenesis. Lab Invest 2007, 87(10):967-970. 10.1038/labinvest.3700666, 17700561.
-
(2007)
Lab Invest
, vol.87
, Issue.10
, pp. 967-970
-
-
West, R.B.1
van de Rijn, M.2
-
86
-
-
44349174801
-
The fibromatosis signature defines a robust stromal response in breast carcinoma
-
10.1038/labinvest.2008.31, 18414401
-
Beck AH, Espinosa I, Gilks CB, van de Rijn M, West RB. The fibromatosis signature defines a robust stromal response in breast carcinoma. Lab Invest 2008, 88(6):591-601. 10.1038/labinvest.2008.31, 18414401.
-
(2008)
Lab Invest
, vol.88
, Issue.6
, pp. 591-601
-
-
Beck, A.H.1
Espinosa, I.2
Gilks, C.B.3
van de Rijn, M.4
West, R.B.5
-
87
-
-
61349148145
-
The macrophage colony-stimulating factor 1 response signature in breast carcinoma
-
10.1158/1078-0432.CCR-08-1283, 19188147
-
Beck AH, Espinosa I, Edris B, Li R, Montgomery K, Zhu S, Varma S, Marinelli RJ, van de Rijn M, West RB. The macrophage colony-stimulating factor 1 response signature in breast carcinoma. Clin Cancer Res 2009, 15(3):778-787. 10.1158/1078-0432.CCR-08-1283, 19188147.
-
(2009)
Clin Cancer Res
, vol.15
, Issue.3
, pp. 778-787
-
-
Beck, A.H.1
Espinosa, I.2
Edris, B.3
Li, R.4
Montgomery, K.5
Zhu, S.6
Varma, S.7
Marinelli, R.J.8
van de Rijn, M.9
West, R.B.10
-
88
-
-
33751099560
-
Enhanced expression of Duffy antigen receptor for chemokines by breast cancer cells attenuates growth and metastasis potential
-
10.1038/sj.onc.1209703, 16785997
-
Wang J, Ou ZL, Hou YF, Luo JM, Shen ZZ, Ding J, Shao ZM. Enhanced expression of Duffy antigen receptor for chemokines by breast cancer cells attenuates growth and metastasis potential. Oncogene 2006, 25(54):7201-7211. 10.1038/sj.onc.1209703, 16785997.
-
(2006)
Oncogene
, vol.25
, Issue.54
, pp. 7201-7211
-
-
Wang, J.1
Ou, Z.L.2
Hou, Y.F.3
Luo, J.M.4
Shen, Z.Z.5
Ding, J.6
Shao, Z.M.7
-
89
-
-
35748946006
-
Duffy antigen/receptor for chemokines (DARC) attenuates angiogenesis by causing senescence in endothelial cells
-
10.1007/s10456-007-9084-y, 17955335
-
Xu L, Ashkenazi A, Chaudhuri A. Duffy antigen/receptor for chemokines (DARC) attenuates angiogenesis by causing senescence in endothelial cells. Angiogenesis 2007, 10(4):307-318. 10.1007/s10456-007-9084-y, 17955335.
-
(2007)
Angiogenesis
, vol.10
, Issue.4
, pp. 307-318
-
-
Xu, L.1
Ashkenazi, A.2
Chaudhuri, A.3
-
90
-
-
33746791465
-
Interaction of KAI1 on tumor cells with DARC on vascular endothelium leads to metastasis suppression
-
10.1038/nm1444, 16862154
-
Bandyopadhyay S, Zhan R, Chaudhuri A, Watabe M, Pai SK, Hirota S, Hosobe S, Tsukada T, Miura K, Takano Y, et al. Interaction of KAI1 on tumor cells with DARC on vascular endothelium leads to metastasis suppression. Nat Med 2006, 12(8):933-938. 10.1038/nm1444, 16862154.
-
(2006)
Nat Med
, vol.12
, Issue.8
, pp. 933-938
-
-
Bandyopadhyay, S.1
Zhan, R.2
Chaudhuri, A.3
Watabe, M.4
Pai, S.K.5
Hirota, S.6
Hosobe, S.7
Tsukada, T.8
Miura, K.9
Takano, Y.10
-
91
-
-
33847727383
-
Interaction of Duffy antigen receptor for chemokines and KAI1: a critical step in metastasis suppression
-
10.1158/0008-5472.CAN-06-3801, 17308076
-
Iiizumi M, Bandyopadhyay S, Watabe K. Interaction of Duffy antigen receptor for chemokines and KAI1: a critical step in metastasis suppression. Cancer Res 2007, 67(4):1411-1414. 10.1158/0008-5472.CAN-06-3801, 17308076.
-
(2007)
Cancer Res
, vol.67
, Issue.4
, pp. 1411-1414
-
-
Iiizumi, M.1
Bandyopadhyay, S.2
Watabe, K.3
-
92
-
-
33748183680
-
The DARC side of metastasis: shining a light on KAI1-mediated metastasis suppression in the vascular tunnel
-
10.1016/j.ccr.2006.08.012, 16959609
-
Zijlstra A, Quigley JP. The DARC side of metastasis: shining a light on KAI1-mediated metastasis suppression in the vascular tunnel. Cancer Cell 2006, 10(3):177-178. 10.1016/j.ccr.2006.08.012, 16959609.
-
(2006)
Cancer Cell
, vol.10
, Issue.3
, pp. 177-178
-
-
Zijlstra, A.1
Quigley, J.P.2
-
93
-
-
0017077503
-
The resistance factor to Plasmodium vivax in blacks. The Duffy-blood-group genotype, FyFy
-
Miller L, Mason S, Clyde D, McGinniss M. The resistance factor to Plasmodium vivax in blacks. The Duffy-blood-group genotype, FyFy. 1976, 295:302-304.
-
(1976)
, vol.295
, pp. 302-304
-
-
Miller, L.1
Mason, S.2
Clyde, D.3
McGinniss, M.4
-
94
-
-
30744470688
-
The Duffy antigen/receptor for chemokines (DARC) regulates prostate tumor growth
-
10.1096/fj.05-4764com, 16394268
-
Shen H, Schuster R, Stringer KF, Waltz SE, Lentsch AB. The Duffy antigen/receptor for chemokines (DARC) regulates prostate tumor growth. FASEB J 2006, 20(1):59-64. 10.1096/fj.05-4764com, 16394268.
-
(2006)
FASEB J
, vol.20
, Issue.1
, pp. 59-64
-
-
Shen, H.1
Schuster, R.2
Stringer, K.F.3
Waltz, S.E.4
Lentsch, A.B.5
-
95
-
-
52649155513
-
Duffy (Fy), DARC, and neutropenia among women from the United States, Europe and the Caribbean
-
10.1111/j.1365-2141.2008.07335.x, 2655355, 18710383
-
Grann V, Ziv E, Joseph C, Neugut A, Wei Y, Jacobson J, Horwitz M, Bowman N, Beckmann K, Hershman D. Duffy (Fy), DARC, and neutropenia among women from the United States, Europe and the Caribbean. British Journal of Haematology 2008, 143(2):288. 10.1111/j.1365-2141.2008.07335.x, 2655355, 18710383.
-
(2008)
British Journal of Haematology
, vol.143
, Issue.2
, pp. 288
-
-
Grann, V.1
Ziv, E.2
Joseph, C.3
Neugut, A.4
Wei, Y.5
Jacobson, J.6
Horwitz, M.7
Bowman, N.8
Beckmann, K.9
Hershman, D.10
-
96
-
-
33846858434
-
Microarray-based identification of tenascin C and tenascin XB, genes possibly involved in tumorigenesis associated with neurofibromatosis type 1
-
10.1158/1078-0432.CCR-06-0182, 17202312
-
Levy P, Ripoche H, Laurendeau I, Lazar V, Ortonne N, Parfait B, Leroy K, Wechsler J, Salmon I, Wolkenstein P, et al. Microarray-based identification of tenascin C and tenascin XB, genes possibly involved in tumorigenesis associated with neurofibromatosis type 1. Clin Cancer Res 2007, 13(2 Pt 1):398-407. 10.1158/1078-0432.CCR-06-0182, 17202312.
-
(2007)
Clin Cancer Res
, vol.13
, Issue.2 PART 1
, pp. 398-407
-
-
Levy, P.1
Ripoche, H.2
Laurendeau, I.3
Lazar, V.4
Ortonne, N.5
Parfait, B.6
Leroy, K.7
Wechsler, J.8
Salmon, I.9
Wolkenstein, P.10
-
97
-
-
3142512612
-
Molecular characterization of the tumor microenvironment in breast cancer
-
10.1016/j.ccr.2004.06.010, 15261139
-
Allinen M, Beroukhim R, Cai L, Brennan C, Lahti-Domenici J, Huang H, Porter D, Hu M, Chin L, Richardson A, et al. Molecular characterization of the tumor microenvironment in breast cancer. Cancer Cell 2004, 6(1):17-32. 10.1016/j.ccr.2004.06.010, 15261139.
-
(2004)
Cancer Cell
, vol.6
, Issue.1
, pp. 17-32
-
-
Allinen, M.1
Beroukhim, R.2
Cai, L.3
Brennan, C.4
Lahti-Domenici, J.5
Huang, H.6
Porter, D.7
Hu, M.8
Chin, L.9
Richardson, A.10
-
98
-
-
42949121126
-
Regulation of in situ to invasive breast carcinoma transition
-
10.1016/j.ccr.2008.03.007, 18455123
-
Hu M, Yao J, Carroll DK, Weremowicz S, Chen H, Carrasco D, Richardson A, Violette S, Nikolskaya T, Nikolsky Y, et al. Regulation of in situ to invasive breast carcinoma transition. Cancer Cell 2008, 13(5):394-406. 10.1016/j.ccr.2008.03.007, 18455123.
-
(2008)
Cancer Cell
, vol.13
, Issue.5
, pp. 394-406
-
-
Hu, M.1
Yao, J.2
Carroll, D.K.3
Weremowicz, S.4
Chen, H.5
Carrasco, D.6
Richardson, A.7
Violette, S.8
Nikolskaya, T.9
Nikolsky, Y.10
-
99
-
-
0033215242
-
Carcinoma-associated fibroblasts direct tumor progression of initiated human prostatic epithelium
-
Olumi AF, Grossfeld GD, Hayward SW, Carroll PR, Tlsty TD, Cunha GR. Carcinoma-associated fibroblasts direct tumor progression of initiated human prostatic epithelium. Cancer Res 1999, 59(19):5002-5011.
-
(1999)
Cancer Res
, vol.59
, Issue.19
, pp. 5002-5011
-
-
Olumi, A.F.1
Grossfeld, G.D.2
Hayward, S.W.3
Carroll, P.R.4
Tlsty, T.D.5
Cunha, G.R.6
-
100
-
-
1842687362
-
Reconstruction of functionally normal and malignant human breast tissues in mice
-
Kuperwasser C, Chavarria T, Wu M, Magrane G, Gray J, Carey L, Richardson A, Weinberg R. Reconstruction of functionally normal and malignant human breast tissues in mice. Proceedings of the National Academy of Sciences 2004, 101(14):4966-4971.
-
(2004)
Proceedings of the National Academy of Sciences
, vol.101
, Issue.14
, pp. 4966-4971
-
-
Kuperwasser, C.1
Chavarria, T.2
Wu, M.3
Magrane, G.4
Gray, J.5
Carey, L.6
Richardson, A.7
Weinberg, R.8
-
101
-
-
0035495401
-
Putting tumours in context
-
10.1038/35094059, 11900251
-
Bissell M, Radisky D. Putting tumours in context. Nature Reviews Cancer 2001, 1(1):46-54. 10.1038/35094059, 11900251.
-
(2001)
Nature Reviews Cancer
, vol.1
, Issue.1
, pp. 46-54
-
-
Bissell, M.1
Radisky, D.2
-
102
-
-
34250857019
-
Tumor cell-organ microenvironment interactions in the pathogenesis of cancer metastasis
-
10.1210/er.2006-0027, 17409287
-
Langley R, Fidler I. Tumor cell-organ microenvironment interactions in the pathogenesis of cancer metastasis. Endocrine reviews 2007, 28(3):297. 10.1210/er.2006-0027, 17409287.
-
(2007)
Endocrine reviews
, vol.28
, Issue.3
, pp. 297
-
-
Langley, R.1
Fidler, I.2
-
103
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
National Acad Sciences
-
Eisen M, Spellman P, Brown P, Botstein D. Cluster analysis and display of genome-wide expression patterns. 1998, 95:14863-14868. National Acad Sciences.
-
(1998)
, vol.95
, pp. 14863-14868
-
-
Eisen, M.1
Spellman, P.2
Brown, P.3
Botstein, D.4
-
104
-
-
0031035181
-
An information-intensive approach to the molecular pharmacology of cancer
-
10.1126/science.275.5298.343, 8994024
-
Weinstein J, Myers T, O'Connor P, Friend S, Fornace A, Kohn K, Fojo T, Bates S, Rubinstein L, Anderson N. An information-intensive approach to the molecular pharmacology of cancer. Science 1997, 275(5298):343. 10.1126/science.275.5298.343, 8994024.
-
(1997)
Science
, vol.275
, Issue.5298
, pp. 343
-
-
Weinstein, J.1
Myers, T.2
O'Connor, P.3
Friend, S.4
Fornace, A.5
Kohn, K.6
Fojo, T.7
Bates, S.8
Rubinstein, L.9
Anderson, N.10
-
105
-
-
34648829133
-
An immune response gene expression module identifies a good prognosis subtype in estrogen receptor negative breast cancer
-
10.1186/gb-2007-8-8-r157, 2374988, 17683518
-
Teschendorff AE, Miremadi A, Pinder SE, Ellis IO, Caldas C. An immune response gene expression module identifies a good prognosis subtype in estrogen receptor negative breast cancer. Genome Biol 2007, 8(8):R157. 10.1186/gb-2007-8-8-r157, 2374988, 17683518.
-
(2007)
Genome Biol
, vol.8
, Issue.8
-
-
Teschendorff, A.E.1
Miremadi, A.2
Pinder, S.E.3
Ellis, I.O.4
Caldas, C.5
-
106
-
-
36348993857
-
High expression of lymphocyte-associated genes in node-negative HER2+ breast cancers correlates with lower recurrence rates
-
10.1158/0008-5472.CAN-07-0539, 18006808
-
Alexe G, Dalgin GS, Scanfeld D, Tamayo P, Mesirov JP, DeLisi C, Harris L, Barnard N, Martel M, Levine AJ, et al. High expression of lymphocyte-associated genes in node-negative HER2+ breast cancers correlates with lower recurrence rates. Cancer Res 2007, 67(22):10669-10676. 10.1158/0008-5472.CAN-07-0539, 18006808.
-
(2007)
Cancer Res
, vol.67
, Issue.22
, pp. 10669-10676
-
-
Alexe, G.1
Dalgin, G.S.2
Scanfeld, D.3
Tamayo, P.4
Mesirov, J.P.5
DeLisi, C.6
Harris, L.7
Barnard, N.8
Martel, M.9
Levine, A.J.10
|