-
1
-
-
33845679072
-
Elementary metabolite units (EMU): a novel framework for modeling isotopic distributions
-
Antoniewicz M.R., Kelleher J.K., Stephanopoulos G. Elementary metabolite units (EMU): a novel framework for modeling isotopic distributions. Metabolic Engineering 2007, 9:68-86.
-
(2007)
Metabolic Engineering
, vol.9
, pp. 68-86
-
-
Antoniewicz, M.R.1
Kelleher, J.K.2
Stephanopoulos, G.3
-
2
-
-
34249297627
-
Metabolic flux analysis in a nonstationary system: fed-batch fermentation of a high yielding strain of E. coli producing 1,3-propanediol
-
Antoniewicz M.R., Kraynie D.F., Laffend L.A., Gonzalez-Lergier J., Kelleher J.K., Stephanopoulos G. Metabolic flux analysis in a nonstationary system: fed-batch fermentation of a high yielding strain of E. coli producing 1,3-propanediol. Metabolic Engineering 2007, 9:277-292.
-
(2007)
Metabolic Engineering
, vol.9
, pp. 277-292
-
-
Antoniewicz, M.R.1
Kraynie, D.F.2
Laffend, L.A.3
Gonzalez-Lergier, J.4
Kelleher, J.K.5
Stephanopoulos, G.6
-
3
-
-
10644251624
-
Quantitative effects of thermal injury and insulin on the metabolism of the skeletal muscle using the perfused rat hindquarter preparation
-
Banta S., Yokoyama T., Berthiaume F., Yarmush M.L. Quantitative effects of thermal injury and insulin on the metabolism of the skeletal muscle using the perfused rat hindquarter preparation. Biotechnology and Bioengineering 2004, 88:613-629.
-
(2004)
Biotechnology and Bioengineering
, vol.88
, pp. 613-629
-
-
Banta, S.1
Yokoyama, T.2
Berthiaume, F.3
Yarmush, M.L.4
-
4
-
-
0029852524
-
Effect of extracellular matrix topology on cell structure, function, and physiological responsiveness: hepatocytes cultured in a sandwich configuration
-
Berthiaume F., Moghe P.V., Toner M., Yarmush M.L. Effect of extracellular matrix topology on cell structure, function, and physiological responsiveness: hepatocytes cultured in a sandwich configuration. FASEB Journal 1996, 10:1471-1484.
-
(1996)
FASEB Journal
, vol.10
, pp. 1471-1484
-
-
Berthiaume, F.1
Moghe, P.V.2
Toner, M.3
Yarmush, M.L.4
-
5
-
-
0038293216
-
Optimization-based framework for inferring and testing hypothesized metabolic objective functions
-
Burgard A.P., Maranas C.D. Optimization-based framework for inferring and testing hypothesized metabolic objective functions. Biotechnology and Bioengineering 2003, 82:670-677.
-
(2003)
Biotechnology and Bioengineering
, vol.82
, pp. 670-677
-
-
Burgard, A.P.1
Maranas, C.D.2
-
6
-
-
0012959337
-
Metabolic flux analysis of cultured hepatocytes exposed to plasma
-
Chan C., Berthiaume F., Lee K., Yarmush M.L. Metabolic flux analysis of cultured hepatocytes exposed to plasma. Biotechnology and Bioengineering 2003, 81:33-49.
-
(2003)
Biotechnology and Bioengineering
, vol.81
, pp. 33-49
-
-
Chan, C.1
Berthiaume, F.2
Lee, K.3
Yarmush, M.L.4
-
7
-
-
0037837641
-
Metabolic flux analysis of hepatocyte function in hormone- and amino acid-supplemented plasma
-
Chan C., Berthiaume F., Lee K., Yarmush M.L. Metabolic flux analysis of hepatocyte function in hormone- and amino acid-supplemented plasma. Metabolic Engineering 2003, 5:1-15.
-
(2003)
Metabolic Engineering
, vol.5
, pp. 1-15
-
-
Chan, C.1
Berthiaume, F.2
Lee, K.3
Yarmush, M.L.4
-
8
-
-
0037199136
-
Metabolic pre-conditioning of cultured cells in physiological levels of insulin: generating resistance to the lipid-accumulating effects of plasma in hepatocytes
-
Chan C., Berthiaume F., Washizu J., Toner M., Yarmush M.L. Metabolic pre-conditioning of cultured cells in physiological levels of insulin: generating resistance to the lipid-accumulating effects of plasma in hepatocytes. Biotechnology and Bioengineering 2002, 78:753-760.
-
(2002)
Biotechnology and Bioengineering
, vol.78
, pp. 753-760
-
-
Chan, C.1
Berthiaume, F.2
Washizu, J.3
Toner, M.4
Yarmush, M.L.5
-
9
-
-
0037357613
-
Application of multivariate analysis to optimize function of cultured hepatocytes
-
Chan C., Hwang D., Stephanopoulos G.N., Yarmush M.L., Stephanopoulos G. Application of multivariate analysis to optimize function of cultured hepatocytes. Biotechnology Progress 2003, 19:580-598.
-
(2003)
Biotechnology Progress
, vol.19
, pp. 580-598
-
-
Chan, C.1
Hwang, D.2
Stephanopoulos, G.N.3
Yarmush, M.L.4
Stephanopoulos, G.5
-
10
-
-
29644446809
-
Development of a metabolic network design and optimization framework incorporating implementation constraints: a succinate production case study
-
Cox S.J., Shalel Levanon S., Sanchez A., Lin H., Peercy B., Bennett G.N., San K.Y. Development of a metabolic network design and optimization framework incorporating implementation constraints: a succinate production case study. Metabolic Engineering 2006, 8:46-57.
-
(2006)
Metabolic Engineering
, vol.8
, pp. 46-57
-
-
Cox, S.J.1
Shalel Levanon, S.2
Sanchez, A.3
Lin, H.4
Peercy, B.5
Bennett, G.N.6
San, K.Y.7
-
11
-
-
0026158432
-
Long-term in vitro function of adult hepatocytes in a collagen sandwich configuration
-
Dunn J.C., Tompkins R.G., Yarmush M.L. Long-term in vitro function of adult hepatocytes in a collagen sandwich configuration. Biotechnology Progress 1991, 7:237-245.
-
(1991)
Biotechnology Progress
, vol.7
, pp. 237-245
-
-
Dunn, J.C.1
Tompkins, R.G.2
Yarmush, M.L.3
-
12
-
-
33747766257
-
A three-level problem-centric strategy for selecting NMR precursor labeling and analytes
-
Ghosh S., Grossmann I.E., Ataai M.M., Domach M.M. A three-level problem-centric strategy for selecting NMR precursor labeling and analytes. Metabolic Engineering 2006, 8:491-507.
-
(2006)
Metabolic Engineering
, vol.8
, pp. 491-507
-
-
Ghosh, S.1
Grossmann, I.E.2
Ataai, M.M.3
Domach, M.M.4
-
13
-
-
50249113230
-
Selection of objective function in genome scale flux balance analysis for process feed development in antibiotic production
-
Khannapho C., Zhao H., Bonde B.K., Kierzek A.M., Avignone-Rossa C.A., Bushell M.E. Selection of objective function in genome scale flux balance analysis for process feed development in antibiotic production. Metabolic Engineering 2008, 10:227-233.
-
(2008)
Metabolic Engineering
, vol.10
, pp. 227-233
-
-
Khannapho, C.1
Zhao, H.2
Bonde, B.K.3
Kierzek, A.M.4
Avignone-Rossa, C.A.5
Bushell, M.E.6
-
14
-
-
33847307148
-
Bayesian-based selection of metabolic objective functions
-
Knorr A.L., Jain R., Srivastava R. Bayesian-based selection of metabolic objective functions. Bioinformatics (Oxford, England) 2007, 23:351-357.
-
(2007)
Bioinformatics (Oxford, England)
, vol.23
, pp. 351-357
-
-
Knorr, A.L.1
Jain, R.2
Srivastava, R.3
-
15
-
-
2342418957
-
Identification of optimal classification functions for biological sample and state discrimination from metabolic profiling data
-
Lee K., Hwang D., Yokoyama T., Stephanopoulos G., Stephanopoulos G.N., Yarmush M.L. Identification of optimal classification functions for biological sample and state discrimination from metabolic profiling data. Bioinformatics (Oxford, England) 2004, 20:959-969.
-
(2004)
Bioinformatics (Oxford, England)
, vol.20
, pp. 959-969
-
-
Lee, K.1
Hwang, D.2
Yokoyama, T.3
Stephanopoulos, G.4
Stephanopoulos, G.N.5
Yarmush, M.L.6
-
16
-
-
44449177159
-
Identification of metabolic fluxes in hepatic cells from transient 13C-labeling experiments: Part II. Flux estimation
-
Maier K., Hofmann U., Reuss M., Mauch K. Identification of metabolic fluxes in hepatic cells from transient 13C-labeling experiments: Part II. Flux estimation. Biotechnology and Bioengineering 2008, 100:355-370.
-
(2008)
Biotechnology and Bioengineering
, vol.100
, pp. 355-370
-
-
Maier, K.1
Hofmann, U.2
Reuss, M.3
Mauch, K.4
-
17
-
-
0037294638
-
Linear physical programming for production planning optimization
-
Maria A., Mattson C.A., Ismail-Yahaya A., Messac A. Linear physical programming for production planning optimization. Engineering Optimization 2003, 35:19-37.
-
(2003)
Engineering Optimization
, vol.35
, pp. 19-37
-
-
Maria, A.1
Mattson, C.A.2
Ismail-Yahaya, A.3
Messac, A.4
-
18
-
-
0033640129
-
From dubious construction of objective functions to the application of physical programming
-
Messac A. From dubious construction of objective functions to the application of physical programming. AIAA Journal 2000, 38:155-163.
-
(2000)
AIAA Journal
, vol.38
, pp. 155-163
-
-
Messac, A.1
-
19
-
-
34249708861
-
Integrated energy and flux balance based multiobjective framework for large-scale metabolic networks
-
Nagrath D., Avila-Elchiver M., Berthiaume F., Tilles A.W., Messac A., Yarmush M.L. Integrated energy and flux balance based multiobjective framework for large-scale metabolic networks. Annals of Biomedical Engineering 2007, 35:863-885.
-
(2007)
Annals of Biomedical Engineering
, vol.35
, pp. 863-885
-
-
Nagrath, D.1
Avila-Elchiver, M.2
Berthiaume, F.3
Tilles, A.W.4
Messac, A.5
Yarmush, M.L.6
-
20
-
-
14644412440
-
Multiobjective optimization strategies for linear gradient chromatography
-
Nagrath D., Bequette B.W., Cramer S.M., Messac A. Multiobjective optimization strategies for linear gradient chromatography. AICHE Journal 2005, 51:511-525.
-
(2005)
AICHE Journal
, vol.51
, pp. 511-525
-
-
Nagrath, D.1
Bequette, B.W.2
Cramer, S.M.3
Messac, A.4
-
21
-
-
68249104194
-
Metabolic preconditioning of donor organs: defatting fatty livers by normothermic perfusion ex vivo
-
Nagrath D., Xu H., Tanimura Y., Zuo R., Berthiaume F., Avila M., Yarmush R., Yarmush M.L. Metabolic preconditioning of donor organs: defatting fatty livers by normothermic perfusion ex vivo. Metabolic Engineering 2009, 11:274-283.
-
(2009)
Metabolic Engineering
, vol.11
, pp. 274-283
-
-
Nagrath, D.1
Xu, H.2
Tanimura, Y.3
Zuo, R.4
Berthiaume, F.5
Avila, M.6
Yarmush, R.7
Yarmush, M.L.8
-
22
-
-
29544450610
-
Identification of distributed metabolic objectives in the hypermetabolic liver by flux and energy balance analysis
-
Nolan R.P., Fenley A.P., Lee K. Identification of distributed metabolic objectives in the hypermetabolic liver by flux and energy balance analysis. Metabolic Engineering 2006, 8:30-45.
-
(2006)
Metabolic Engineering
, vol.8
, pp. 30-45
-
-
Nolan, R.P.1
Fenley, A.P.2
Lee, K.3
-
23
-
-
0026603416
-
Network analysis of intermediary metabolism using linear optimization. II. Interpretation of hybridoma cell metabolism
-
Savinell J.M., Palsson B.O. Network analysis of intermediary metabolism using linear optimization. II. Interpretation of hybridoma cell metabolism. Journal of Theoretical Biology 1992, 154:455-473.
-
(1992)
Journal of Theoretical Biology
, vol.154
, pp. 455-473
-
-
Savinell, J.M.1
Palsson, B.O.2
-
25
-
-
77954452371
-
Adipocyte-derived basement membrane extract with biological activity: applications in hepatocyte functional augmentation in vitro
-
Sharma N.S., Nagrath D., Yarmush M.L. Adipocyte-derived basement membrane extract with biological activity: applications in hepatocyte functional augmentation in vitro. FASEB Journal 2010.
-
(2010)
FASEB Journal
-
-
Sharma, N.S.1
Nagrath, D.2
Yarmush, M.L.3
-
26
-
-
0037133330
-
Optimizing bioconversion pathways through systems analysis and metabolic engineering
-
Stafford D.E., Yanagimachi K.S., Lessard P.A., Rijhwani S.K., Sinskey A.J., Stephanopoulos G. Optimizing bioconversion pathways through systems analysis and metabolic engineering. Proceedings of the National Academy of Sciences of the United States of America 2002, 99:1801-1806.
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, pp. 1801-1806
-
-
Stafford, D.E.1
Yanagimachi, K.S.2
Lessard, P.A.3
Rijhwani, S.K.4
Sinskey, A.J.5
Stephanopoulos, G.6
-
27
-
-
4544288672
-
Reconstruction and functional characterization of the human mitochondrial metabolic network based on proteomic and biochemical data
-
Vo T.D., Greenberg H.J., Palsson B.O. Reconstruction and functional characterization of the human mitochondrial metabolic network based on proteomic and biochemical data. The Journal of Biological Chemistry 2004, 279:39532-39540.
-
(2004)
The Journal of Biological Chemistry
, vol.279
, pp. 39532-39540
-
-
Vo, T.D.1
Greenberg, H.J.2
Palsson, B.O.3
-
28
-
-
1442282950
-
Metabolic and transcriptional patterns accompanying glutamine depletion and repletion in mouse hepatoma cells: a model for physiological regulatory networks
-
Wong M.S., Raab R.M., Rigoutsos I., Stephanopoulos G.N., Kelleher J.K. Metabolic and transcriptional patterns accompanying glutamine depletion and repletion in mouse hepatoma cells: a model for physiological regulatory networks. Physiological Genomics 2004, 16:247-255.
-
(2004)
Physiological Genomics
, vol.16
, pp. 247-255
-
-
Wong, M.S.1
Raab, R.M.2
Rigoutsos, I.3
Stephanopoulos, G.N.4
Kelleher, J.K.5
-
29
-
-
51049091904
-
Quantifying reductive carboxylation flux of glutamine to lipid in a brown adipocyte cell line
-
Yoo H., Antoniewicz M.R., Stephanopoulos G., Kelleher J.K. Quantifying reductive carboxylation flux of glutamine to lipid in a brown adipocyte cell line. The Journal of Biological Chemistry 2008, 283:20621-20627.
-
(2008)
The Journal of Biological Chemistry
, vol.283
, pp. 20621-20627
-
-
Yoo, H.1
Antoniewicz, M.R.2
Stephanopoulos, G.3
Kelleher, J.K.4
-
30
-
-
38449111120
-
An elementary metabolite unit (EMU) based method of isotopically nonstationary flux analysis
-
Young J.D., Walther J.L., Antoniewicz M.R., Yoo H., Stephanopoulos G. An elementary metabolite unit (EMU) based method of isotopically nonstationary flux analysis. Biotechnology and Bioengineering 2008, 99:686-699.
-
(2008)
Biotechnology and Bioengineering
, vol.99
, pp. 686-699
-
-
Young, J.D.1
Walther, J.L.2
Antoniewicz, M.R.3
Yoo, H.4
Stephanopoulos, G.5
|