-
1
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, et al. (2001) Initial sequencing and analysis of the human genome. Nature 409: 860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
-
2
-
-
1542563409
-
Initial sequencing and comparative analysis of the mouse genome
-
Waterston RH, Lindblad-Toh K, Birney E, Rogers J, Abril JF, et al. (2002) Initial sequencing and comparative analysis of the mouse genome. Nature 420: 520-562.
-
(2002)
Nature
, vol.420
, pp. 520-562
-
-
Waterston, R.H.1
Lindblad-Toh, K.2
Birney, E.3
Rogers, J.4
Abril, J.F.5
-
3
-
-
0034079713
-
Human LINE retrotransposons generate processed pseudogenes
-
Esnault C, Maestre J, Heidmann T (2000) Human LINE retrotransposons generate processed pseudogenes. Nat Genet 24: 363-367.
-
(2000)
Nat Genet
, vol.24
, pp. 363-367
-
-
Esnault, C.1
Maestre, J.2
Heidmann, T.3
-
4
-
-
0036251775
-
Many human genes are transcribed from the antisense promoter of L1 retrotransposon
-
Nigumann P, Redik K, Matlik K, Speek M (2002) Many human genes are transcribed from the antisense promoter of L1 retrotransposon. Genomics 79: 628-634.
-
(2002)
Genomics
, vol.79
, pp. 628-634
-
-
Nigumann, P.1
Redik, K.2
Matlik, K.3
Speek, M.4
-
5
-
-
23744454779
-
Gene-breaking: A new paradigm for human retrotransposon-mediated gene evolution
-
Wheelan SJ, Aizawa Y, Han JS, Boeke JD (2005) Gene-breaking: a new paradigm for human retrotransposon-mediated gene evolution. Genome Res 15: 1073-1078.
-
(2005)
Genome Res
, vol.15
, pp. 1073-1078
-
-
Wheelan, S.J.1
Aizawa, Y.2
Han, J.S.3
Boeke, J.D.4
-
6
-
-
30044433182
-
Molecular evolution and tempo of amplification of human LINE-1 retrotransposons since the origin of primates
-
Khan H, Smit A, Boissinot S (2006) Molecular evolution and tempo of amplification of human LINE-1 retrotransposons since the origin of primates. Genome Res 16: 78-87.
-
(2006)
Genome Res
, vol.16
, pp. 78-87
-
-
Khan, H.1
Smit, A.2
Boissinot, S.3
-
8
-
-
34248358963
-
Progress in understanding the biology of the human mutagen LINE-1
-
Babushok DV, Kazazian HH, Jr. (2007) Progress in understanding the biology of the human mutagen LINE-1. Hum Mutat 28: 527-539.
-
(2007)
Hum Mutat
, vol.28
, pp. 527-539
-
-
Babushok, D.V.1
Kazazian Jr., H.H.2
-
10
-
-
34347326163
-
Efficient translation initiation directed by the 900-nucleotide-long and GC-rich 59 untranslated region of the human retrotransposon LINE-1 mRNA is strictly cap dependent rather than internal ribosome entry site mediated
-
Dmitriev SE, Andreev DE, Terenin IM, Olovnikov IA, Prassolov VS, et al. (2007) Efficient translation initiation directed by the 900-nucleotide-long and GC-rich 59 untranslated region of the human retrotransposon LINE-1 mRNA is strictly cap dependent rather than internal ribosome entry site mediated. Mol Cell Biol 27: 4685-4697.
-
(2007)
Mol Cell Biol
, vol.27
, pp. 4685-4697
-
-
Dmitriev, S.E.1
Andreev, D.E.2
Terenin, I.M.3
Olovnikov, I.A.4
Prassolov, V.S.5
-
11
-
-
0345604433
-
An important role for RUNX3 in human L1 transcription and retrotransposition
-
Yang N, Zhang L, Zhang Y, Kazazian HH, Jr. (2003) An important role for RUNX3 in human L1 transcription and retrotransposition. Nucleic Acids Res 31: 4929-4940.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 4929-4940
-
-
Yang, N.1
Zhang, L.2
Zhang, Y.3
Kazazian Jr., H.H.4
-
12
-
-
3242706180
-
A YY1-binding site is required for accurate human LINE-1 transcription initiation
-
Athanikar JN, Badge RM, Moran JV (2004) A YY1-binding site is required for accurate human LINE-1 transcription initiation. Nucleic Acids Res 32: 3846-3855.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 3846-3855
-
-
Athanikar, J.N.1
Badge, R.M.2
Moran, J.V.3
-
13
-
-
0032518909
-
An actively retrotransposing, novel subfamily of mouse L1 elements
-
Naas TP, DeBerardinis RJ, Moran JV, Ostertag EM, Kingsmore SF, et al. (1998) An actively retrotransposing, novel subfamily of mouse L1 elements. Embo J 17: 590-597.
-
(1998)
Embo J
, vol.17
, pp. 590-597
-
-
Naas, T.P.1
deBerardinis, R.J.2
Moran, J.V.3
Ostertag, E.M.4
Kingsmore, S.F.5
-
14
-
-
0034760666
-
A novel active L1 retrotransposon subfamily in the mouse
-
Goodier JL, Ostertag EM, Du K, Kazazian HH, Jr. (2001) A novel active L1 retrotransposon subfamily in the mouse. Genome Res 11: 1677-1685.
-
(2001)
Genome Res
, vol.11
, pp. 1677-1685
-
-
Goodier, J.L.1
Ostertag, E.M.2
Du, K.3
Kazazian, H.H.4
-
15
-
-
0033559056
-
Analysis of the promoter from an expanding mouse retrotransposon subfamily
-
DeBerardinis RJ, Kazazian HH, Jr. (1999) Analysis of the promoter from an expanding mouse retrotransposon subfamily. Genomics 56: 317-323.
-
(1999)
Genomics
, vol.56
, pp. 317-323
-
-
Deberardinis, R.J.1
Kazazian Jr., H.H.2
-
16
-
-
13444282428
-
L1Base: From functional annotation to prediction of active LINE-1 elements
-
Penzkofer T, Dandekar T, Zemojtel T (2005) L1Base: from functional annotation to prediction of active LINE-1 elements. Nucleic Acids Res 33: D498-500.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Penzkofer, T.1
Dandekar, T.2
Zemojtel, T.3
-
17
-
-
22844438250
-
A systematic analysis of LINE-1 endonuclease-dependent retrotranspositional events causing human genetic disease
-
Chen JM, Stenson PD, Cooper DN, Ferec C (2005) A systematic analysis of LINE-1 endonuclease-dependent retrotranspositional events causing human genetic disease. Hum Genet 117: 411-427.
-
(2005)
Hum Genet
, vol.117
, pp. 411-427
-
-
Chen, J.M.1
Stenson, P.D.2
Cooper, D.N.3
Ferec, C.4
-
18
-
-
67349209262
-
Epigenetic control of mammalian LINE-1 retrotransposon by retinoblastoma proteins
-
Montoya-Durango DE, Liu Y, Teneng I, Kalbfleisch T, Lacy ME, et al. (2009) Epigenetic control of mammalian LINE-1 retrotransposon by retinoblastoma proteins. Mutat Res 665: 20-28.
-
(2009)
Mutat Res
, vol.665
, pp. 20-28
-
-
Montoya-Durango, D.E.1
Liu, Y.2
Teneng, I.3
Kalbfleisch, T.4
Lacy, M.E.5
-
19
-
-
55549103719
-
E2F in vivo binding specificity: Comparison of consensus versus nonconsensus binding sites
-
Rabinovich A, Jin VX, Rabinovich R, Xu X, Farnham PJ (2008) E2F in vivo binding specificity: comparison of consensus versus nonconsensus binding sites. Genome Res 18: 1763-1777.
-
(2008)
Genome Res
, vol.18
, pp. 1763-1777
-
-
Rabinovich, A.1
Jin, V.X.2
Rabinovich, R.3
Xu, X.4
Farnham, P.J.5
-
20
-
-
0032784908
-
Interspersed repeats and other mementos of transposable elements in mammalian genomes
-
Smit AF (1999) Interspersed repeats and other mementos of transposable elements in mammalian genomes. Curr Opin Genet Dev 9: 657-663.
-
(1999)
Curr Opin Genet Dev
, vol.9
, pp. 657-663
-
-
Smit, A.F.1
-
21
-
-
0031735504
-
Rapid amplification of a retrotransposon subfamily is evolving the mouse genome
-
DeBerardinis RJ, Goodier JL, Ostertag EM, Kazazian HH, Jr. (1998) Rapid amplification of a retrotransposon subfamily is evolving the mouse genome. Nat Genet 20: 288-290.
-
(1998)
Nat Genet
, vol.20
, pp. 288-290
-
-
deBerardinis, R.J.1
Goodier, J.L.2
Ostertag, E.M.3
Kazazian Jr., H.H.4
-
22
-
-
34548555700
-
Transcriptional interference: An unexpected layer of complexity in gene regulation
-
Mazo A, Hodgson JW, Petruk S, Sedkov Y, Brock HW (2007) Transcriptional interference: an unexpected layer of complexity in gene regulation. J Cell Sci 120: 2755-2761.
-
(2007)
J Cell Sci
, vol.120
, pp. 2755-2761
-
-
Mazo, A.1
Hodgson, J.W.2
Petruk, S.3
Sedkov, Y.4
Brock, H.W.5
-
23
-
-
37349093019
-
Genome organization and gene expression shape the transposable element distribution in the Drosophila melanogaster euchromatin
-
Fontanillas P, Hartl DL, Reuter M (2007) Genome organization and gene expression shape the transposable element distribution in the Drosophila melanogaster euchromatin. PLoS Genet 3: e210.
-
(2007)
PLoS Genet
, vol.e210
, pp. 3
-
-
Fontanillas, P.1
Hartl, D.L.2
Reuter, M.3
-
24
-
-
33749368402
-
Evidence of influence of genomic DNA sequence on human X chromosome inactivation
-
Wang Z, Willard HF, Mukherjee S, Furey TS (2006) Evidence of influence of genomic DNA sequence on human X chromosome inactivation. PLoS Comput Biol 2: e113.
-
(2006)
PLoS Comput Biol
, vol.e113
, pp. 2
-
-
Wang, Z.1
Willard, H.F.2
Mukherjee, S.3
Furey, T.S.4
-
25
-
-
3543151399
-
The insertional history of an active family of L1 retrotransposons in humans
-
Boissinot S, Entezam A, Young L, Munson PJ, Furano AV (2004) The insertional history of an active family of L1 retrotransposons in humans. Genome Res 14: 1221-1231.
-
(2004)
Genome Res
, vol.14
, pp. 1221-1231
-
-
Boissinot, S.1
Entezam, A.2
Young, L.3
Munson, P.J.4
Furano, A.V.5
-
26
-
-
0034612238
-
Molecular evidence for a relationship between LINE-1 elements and X chromosome inactivation: The Lyon repeat hypothesis
-
Bailey JA, Carrel L, Chakravarti A, Eichler EE (2000) Molecular evidence for a relationship between LINE-1 elements and X chromosome inactivation: the Lyon repeat hypothesis. Proc Natl Acad Sci U S A 97: 6634-6639.
-
(2000)
Proc Natl Acad Sci U S A
, vol.97
, pp. 6634-6639
-
-
Bailey, J.A.1
Carrel, L.2
Chakravarti, A.3
Eichler, E.E.4
-
27
-
-
0042692850
-
High concentrations of long interspersed nuclear element sequence distinguish monoallelically expressed genes
-
Allen E, Horvath S, Tong F, Kraft P, Spiteri E, et al. (2003) High concentrations of long interspersed nuclear element sequence distinguish monoallelically expressed genes. Proc Natl Acad Sci U S A 100: 9940-9945.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 9940-9945
-
-
Allen, E.1
Horvath, S.2
Tong, F.3
Kraft, P.4
Spiteri, E.5
-
28
-
-
34548444664
-
Comparative analysis of sequence characteristics of imprinted genes in human, mouse, and cattle
-
Khatib H, Zaitoun I, Kim ES (2007) Comparative analysis of sequence characteristics of imprinted genes in human, mouse, and cattle. Mamm Genome 18: 538-547.
-
(2007)
Mamm Genome
, vol.18
, pp. 538-547
-
-
Khatib, H.1
Zaitoun, I.2
Kim, E.S.3
-
29
-
-
15444372817
-
The profile of repeat-associated histone lysine methylation states in the mouse epigenome
-
Martens JH, O'Sullivan RJ, Braunschweig U, Opravil S, Radolf M, et al. (2005) The profile of repeat-associated histone lysine methylation states in the mouse epigenome. Embo J 24: 800-812.
-
(2005)
Embo J
, vol.24
, pp. 800-812
-
-
Martens, J.H.1
O'Sullivan, R.J.2
Braunschweig, U.3
Opravil, S.4
Radolf, M.5
-
30
-
-
33745757882
-
The genomic distribution of l1 elements: The role of insertion bias and natural selection
-
Graham T, Boissinot S (2006) The genomic distribution of l1 elements: the role of insertion bias and natural selection. J Biomed Biotechnol 2006: 75327.
-
(2006)
J Biomed Biotechnol
, vol.2006
, pp. 75327
-
-
Graham, T.1
Boissinot, S.2
-
31
-
-
32944476464
-
Expression of LINE-1 retroposons is essential for murine preimplantation development
-
Beraldi R, Pittoggi C, Sciamanna I, Mattei E, Spadafora C (2006) Expression of LINE-1 retroposons is essential for murine preimplantation development. Mol Reprod Dev 73: 279-287.
-
(2006)
Mol Reprod Dev
, vol.73
, pp. 279-287
-
-
Beraldi, R.1
Pittoggi, C.2
Sciamanna, I.3
Mattei, E.4
Spadafora, C.5
-
32
-
-
20544466648
-
Somatic mosaicism in neuronal precursor cells mediated by L1 retrotransposition
-
Muotri AR, Chu VT, Marchetto MC, Deng W, Moran JV, et al. (2005) Somatic mosaicism in neuronal precursor cells mediated by L1 retrotransposition. Nature 435: 903-910.
-
(2005)
Nature
, vol.435
, pp. 903-910
-
-
Muotri, A.R.1
Chu, V.T.2
Marchetto, M.C.3
Deng, W.4
Moran, J.V.5
-
33
-
-
70350455280
-
Epigenetic regulation of Mammalian genomes by transposable elements
-
Huda A, Jordan IK (2009) Epigenetic regulation of Mammalian genomes by transposable elements. Ann N Y Acad Sci 1178: 276-284.
-
(2009)
Ann N Y Acad Sci
, vol.1178
, pp. 276-284
-
-
Huda, A.1
Jordan, I.K.2
-
34
-
-
62549114851
-
Repetitive DNA elements, nucleosome binding and human gene expression
-
Huda A, Marino-Ramirez L, Landsman D, Jordan IK (2009) Repetitive DNA elements, nucleosome binding and human gene expression. Gene 436: 12-22.
-
(2009)
Gene
, vol.436
, pp. 12-22
-
-
Huda, A.1
Marino-Ramirez, L.2
Landsman, D.3
Jordan, I.K.4
-
35
-
-
33947303168
-
Transposable elements and the epigenetic regulation of the genome
-
Slotkin RK, Martienssen R (2007) Transposable elements and the epigenetic regulation of the genome. Nat Rev Genet 8: 272-285.
-
(2007)
Nat Rev Genet
, vol.8
, pp. 272-285
-
-
Slotkin, R.K.1
Martienssen, R.2
-
36
-
-
59949085939
-
H3K27me3 forms BLOCs over silent genes and intergenic regions and specifies a histone banding pattern on a mouse autosomal chromosome
-
Pauler FM, Sloane MA, Huang R, Regha K, Koerner MV, et al. (2009) H3K27me3 forms BLOCs over silent genes and intergenic regions and specifies a histone banding pattern on a mouse autosomal chromosome. Genome Res 19: 221-233.
-
(2009)
Genome Res
, vol.19
, pp. 221-233
-
-
Pauler, F.M.1
Sloane, M.A.2
Huang, R.3
Regha, K.4
Koerner, M.V.5
-
37
-
-
2442667886
-
Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes
-
Han JS, Szak ST, Boeke JD (2004) Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes. Nature 429: 268-274.
-
(2004)
Nature
, vol.429
, pp. 268-274
-
-
Han, J.S.1
Szak, S.T.2
Boeke, J.D.3
-
38
-
-
33845621109
-
Control of FWA gene silencing in Arabidopsis thaliana by SINE-related direct repeats
-
Kinoshita Y, Saze H, Kinoshita T, Miura A, Soppe WJ, et al. (2007) Control of FWA gene silencing in Arabidopsis thaliana by SINE-related direct repeats. Plant J 49: 38-45.
-
(2007)
Plant J
, vol.49
, pp. 38-45
-
-
Kinoshita, Y.1
Saze, H.2
Kinoshita, T.3
Miura, A.4
Soppe, W.J.5
-
39
-
-
0032819331
-
Unlocking the mechanisms of transcription factor YY1: Are chromatin modifying enzymes the key?
-
Thomas MJ, Seto E (1999) Unlocking the mechanisms of transcription factor YY1: are chromatin modifying enzymes the key? Gene 236: 197-208.
-
(1999)
Gene
, vol.236
, pp. 197-208
-
-
Thomas, M.J.1
Seto, E.2
-
40
-
-
57649221599
-
Epigenetic silencing of CCAAT/enhancer-binding protein delta activity by YY1/polycomb group/DNA methyltransferase complex
-
Ko CY, Hsu HC, Shen MR, Chang WC, Wang JM (2008) Epigenetic silencing of CCAAT/enhancer-binding protein delta activity by YY1/polycomb group/DNA methyltransferase complex. J Biol Chem 283: 30919-30932.
-
(2008)
J Biol Chem
, vol.283
, pp. 30919-30932
-
-
Ko, C.Y.1
Hsu, H.C.2
Shen, M.R.3
Chang, W.C.4
Wang, J.M.5
-
41
-
-
0042847306
-
Redox regulation of a novel L1Md-A2 retrotransposon in vascular smooth muscle cells
-
Lu KP, Ramos KS (2003) Redox regulation of a novel L1Md-A2 retrotransposon in vascular smooth muscle cells. J Biol Chem 278: 28201-28209.
-
(2003)
J Biol Chem
, vol.278
, pp. 28201-28209
-
-
Lu, K.P.1
Ramos, K.S.2
-
42
-
-
0023695504
-
The structure of the regulatory region of the rat L1 (L1Rn, long interspersed repeated) DNA family of transposable elements
-
Furano AV, Robb SM, Robb FT (1988) The structure of the regulatory region of the rat L1 (L1Rn, long interspersed repeated) DNA family of transposable elements. Nucleic Acids Res 16: 9215-9231.
-
(1988)
Nucleic Acids Res
, vol.16
, pp. 9215-9231
-
-
Furano, A.V.1
Robb, S.M.2
Robb, F.T.3
-
43
-
-
0030940594
-
Identification of critical CpG sites for repression of L1 transcription by DNA methylation
-
Hata K, Sakaki Y (1997) Identification of critical CpG sites for repression of L1 transcription by DNA methylation. Gene 189: 227-234.
-
(1997)
Gene
, vol.189
, pp. 227-234
-
-
Hata, K.1
Sakaki, Y.2
-
44
-
-
13844275301
-
Similarity of position frequency matrices for transcription factor binding sites
-
Schones DE, Sumazin P, Zhang MQ (2005) Similarity of position frequency matrices for transcription factor binding sites. Bioinformatics 21: 307-313.
-
(2005)
Bioinformatics
, vol.21
, pp. 307-313
-
-
Schones, D.E.1
Sumazin, P.2
Zhang, M.Q.3
-
45
-
-
51049112461
-
CpG dinucleotides and the mutation rate of non-CpG DNA
-
Walser JC, Ponger L, Furano AV (2008) CpG dinucleotides and the mutation rate of non-CpG DNA. Genome Res 18: 1403-1414.
-
(2008)
Genome Res
, vol.18
, pp. 1403-1414
-
-
Walser, J.C.1
Ponger, L.2
Furano, A.V.3
-
46
-
-
69849108458
-
Control of chicken CR1 retrotransposons is independent of Dicer-mediated RNA interference pathway
-
Lee SH, Eldi P, Cho SY, Rangasamy D (2009) Control of chicken CR1 retrotransposons is independent of Dicer-mediated RNA interference pathway. BMC Biol 7: 53.
-
(2009)
BMC Biol
, vol.7
, pp. 53
-
-
Lee, S.H.1
Eldi, P.2
Cho, S.Y.3
Rangasamy, D.4
|