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Volumn 5, Issue 6, 2010, Pages

The impact of CpG island on defining transcriptional activation of the mouse L1 retrotransposable elements

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR RUNX3; TRANSCRIPTION FACTOR YY1; RUNX3 PROTEIN, MOUSE; YY1 PROTEIN, MOUSE;

EID: 77955316530     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0011353     Document Type: Article
Times cited : (18)

References (46)
  • 3
    • 0034079713 scopus 로고    scopus 로고
    • Human LINE retrotransposons generate processed pseudogenes
    • Esnault C, Maestre J, Heidmann T (2000) Human LINE retrotransposons generate processed pseudogenes. Nat Genet 24: 363-367.
    • (2000) Nat Genet , vol.24 , pp. 363-367
    • Esnault, C.1    Maestre, J.2    Heidmann, T.3
  • 4
    • 0036251775 scopus 로고    scopus 로고
    • Many human genes are transcribed from the antisense promoter of L1 retrotransposon
    • Nigumann P, Redik K, Matlik K, Speek M (2002) Many human genes are transcribed from the antisense promoter of L1 retrotransposon. Genomics 79: 628-634.
    • (2002) Genomics , vol.79 , pp. 628-634
    • Nigumann, P.1    Redik, K.2    Matlik, K.3    Speek, M.4
  • 5
    • 23744454779 scopus 로고    scopus 로고
    • Gene-breaking: A new paradigm for human retrotransposon-mediated gene evolution
    • Wheelan SJ, Aizawa Y, Han JS, Boeke JD (2005) Gene-breaking: a new paradigm for human retrotransposon-mediated gene evolution. Genome Res 15: 1073-1078.
    • (2005) Genome Res , vol.15 , pp. 1073-1078
    • Wheelan, S.J.1    Aizawa, Y.2    Han, J.S.3    Boeke, J.D.4
  • 6
    • 30044433182 scopus 로고    scopus 로고
    • Molecular evolution and tempo of amplification of human LINE-1 retrotransposons since the origin of primates
    • Khan H, Smit A, Boissinot S (2006) Molecular evolution and tempo of amplification of human LINE-1 retrotransposons since the origin of primates. Genome Res 16: 78-87.
    • (2006) Genome Res , vol.16 , pp. 78-87
    • Khan, H.1    Smit, A.2    Boissinot, S.3
  • 7
    • 0035674903 scopus 로고    scopus 로고
    • Biology of mammalian L1 retrotransposons
    • Ostertag EM, Kazazian HH, Jr. (2001) Biology of mammalian L1 retrotransposons. Annu Rev Genet 35: 501-538.
    • (2001) Annu Rev Genet , vol.35 , pp. 501-538
    • Ostertag, E.M.1    Kazazian Jr., H.H.2
  • 8
    • 34248358963 scopus 로고    scopus 로고
    • Progress in understanding the biology of the human mutagen LINE-1
    • Babushok DV, Kazazian HH, Jr. (2007) Progress in understanding the biology of the human mutagen LINE-1. Hum Mutat 28: 527-539.
    • (2007) Hum Mutat , vol.28 , pp. 527-539
    • Babushok, D.V.1    Kazazian Jr., H.H.2
  • 10
    • 34347326163 scopus 로고    scopus 로고
    • Efficient translation initiation directed by the 900-nucleotide-long and GC-rich 59 untranslated region of the human retrotransposon LINE-1 mRNA is strictly cap dependent rather than internal ribosome entry site mediated
    • Dmitriev SE, Andreev DE, Terenin IM, Olovnikov IA, Prassolov VS, et al. (2007) Efficient translation initiation directed by the 900-nucleotide-long and GC-rich 59 untranslated region of the human retrotransposon LINE-1 mRNA is strictly cap dependent rather than internal ribosome entry site mediated. Mol Cell Biol 27: 4685-4697.
    • (2007) Mol Cell Biol , vol.27 , pp. 4685-4697
    • Dmitriev, S.E.1    Andreev, D.E.2    Terenin, I.M.3    Olovnikov, I.A.4    Prassolov, V.S.5
  • 11
    • 0345604433 scopus 로고    scopus 로고
    • An important role for RUNX3 in human L1 transcription and retrotransposition
    • Yang N, Zhang L, Zhang Y, Kazazian HH, Jr. (2003) An important role for RUNX3 in human L1 transcription and retrotransposition. Nucleic Acids Res 31: 4929-4940.
    • (2003) Nucleic Acids Res , vol.31 , pp. 4929-4940
    • Yang, N.1    Zhang, L.2    Zhang, Y.3    Kazazian Jr., H.H.4
  • 12
    • 3242706180 scopus 로고    scopus 로고
    • A YY1-binding site is required for accurate human LINE-1 transcription initiation
    • Athanikar JN, Badge RM, Moran JV (2004) A YY1-binding site is required for accurate human LINE-1 transcription initiation. Nucleic Acids Res 32: 3846-3855.
    • (2004) Nucleic Acids Res , vol.32 , pp. 3846-3855
    • Athanikar, J.N.1    Badge, R.M.2    Moran, J.V.3
  • 14
    • 0034760666 scopus 로고    scopus 로고
    • A novel active L1 retrotransposon subfamily in the mouse
    • Goodier JL, Ostertag EM, Du K, Kazazian HH, Jr. (2001) A novel active L1 retrotransposon subfamily in the mouse. Genome Res 11: 1677-1685.
    • (2001) Genome Res , vol.11 , pp. 1677-1685
    • Goodier, J.L.1    Ostertag, E.M.2    Du, K.3    Kazazian, H.H.4
  • 15
    • 0033559056 scopus 로고    scopus 로고
    • Analysis of the promoter from an expanding mouse retrotransposon subfamily
    • DeBerardinis RJ, Kazazian HH, Jr. (1999) Analysis of the promoter from an expanding mouse retrotransposon subfamily. Genomics 56: 317-323.
    • (1999) Genomics , vol.56 , pp. 317-323
    • Deberardinis, R.J.1    Kazazian Jr., H.H.2
  • 16
    • 13444282428 scopus 로고    scopus 로고
    • L1Base: From functional annotation to prediction of active LINE-1 elements
    • Penzkofer T, Dandekar T, Zemojtel T (2005) L1Base: from functional annotation to prediction of active LINE-1 elements. Nucleic Acids Res 33: D498-500.
    • (2005) Nucleic Acids Res , vol.33
    • Penzkofer, T.1    Dandekar, T.2    Zemojtel, T.3
  • 17
    • 22844438250 scopus 로고    scopus 로고
    • A systematic analysis of LINE-1 endonuclease-dependent retrotranspositional events causing human genetic disease
    • Chen JM, Stenson PD, Cooper DN, Ferec C (2005) A systematic analysis of LINE-1 endonuclease-dependent retrotranspositional events causing human genetic disease. Hum Genet 117: 411-427.
    • (2005) Hum Genet , vol.117 , pp. 411-427
    • Chen, J.M.1    Stenson, P.D.2    Cooper, D.N.3    Ferec, C.4
  • 18
    • 67349209262 scopus 로고    scopus 로고
    • Epigenetic control of mammalian LINE-1 retrotransposon by retinoblastoma proteins
    • Montoya-Durango DE, Liu Y, Teneng I, Kalbfleisch T, Lacy ME, et al. (2009) Epigenetic control of mammalian LINE-1 retrotransposon by retinoblastoma proteins. Mutat Res 665: 20-28.
    • (2009) Mutat Res , vol.665 , pp. 20-28
    • Montoya-Durango, D.E.1    Liu, Y.2    Teneng, I.3    Kalbfleisch, T.4    Lacy, M.E.5
  • 19
    • 55549103719 scopus 로고    scopus 로고
    • E2F in vivo binding specificity: Comparison of consensus versus nonconsensus binding sites
    • Rabinovich A, Jin VX, Rabinovich R, Xu X, Farnham PJ (2008) E2F in vivo binding specificity: comparison of consensus versus nonconsensus binding sites. Genome Res 18: 1763-1777.
    • (2008) Genome Res , vol.18 , pp. 1763-1777
    • Rabinovich, A.1    Jin, V.X.2    Rabinovich, R.3    Xu, X.4    Farnham, P.J.5
  • 20
    • 0032784908 scopus 로고    scopus 로고
    • Interspersed repeats and other mementos of transposable elements in mammalian genomes
    • Smit AF (1999) Interspersed repeats and other mementos of transposable elements in mammalian genomes. Curr Opin Genet Dev 9: 657-663.
    • (1999) Curr Opin Genet Dev , vol.9 , pp. 657-663
    • Smit, A.F.1
  • 21
    • 0031735504 scopus 로고    scopus 로고
    • Rapid amplification of a retrotransposon subfamily is evolving the mouse genome
    • DeBerardinis RJ, Goodier JL, Ostertag EM, Kazazian HH, Jr. (1998) Rapid amplification of a retrotransposon subfamily is evolving the mouse genome. Nat Genet 20: 288-290.
    • (1998) Nat Genet , vol.20 , pp. 288-290
    • deBerardinis, R.J.1    Goodier, J.L.2    Ostertag, E.M.3    Kazazian Jr., H.H.4
  • 22
    • 34548555700 scopus 로고    scopus 로고
    • Transcriptional interference: An unexpected layer of complexity in gene regulation
    • Mazo A, Hodgson JW, Petruk S, Sedkov Y, Brock HW (2007) Transcriptional interference: an unexpected layer of complexity in gene regulation. J Cell Sci 120: 2755-2761.
    • (2007) J Cell Sci , vol.120 , pp. 2755-2761
    • Mazo, A.1    Hodgson, J.W.2    Petruk, S.3    Sedkov, Y.4    Brock, H.W.5
  • 23
    • 37349093019 scopus 로고    scopus 로고
    • Genome organization and gene expression shape the transposable element distribution in the Drosophila melanogaster euchromatin
    • Fontanillas P, Hartl DL, Reuter M (2007) Genome organization and gene expression shape the transposable element distribution in the Drosophila melanogaster euchromatin. PLoS Genet 3: e210.
    • (2007) PLoS Genet , vol.e210 , pp. 3
    • Fontanillas, P.1    Hartl, D.L.2    Reuter, M.3
  • 24
    • 33749368402 scopus 로고    scopus 로고
    • Evidence of influence of genomic DNA sequence on human X chromosome inactivation
    • Wang Z, Willard HF, Mukherjee S, Furey TS (2006) Evidence of influence of genomic DNA sequence on human X chromosome inactivation. PLoS Comput Biol 2: e113.
    • (2006) PLoS Comput Biol , vol.e113 , pp. 2
    • Wang, Z.1    Willard, H.F.2    Mukherjee, S.3    Furey, T.S.4
  • 25
    • 3543151399 scopus 로고    scopus 로고
    • The insertional history of an active family of L1 retrotransposons in humans
    • Boissinot S, Entezam A, Young L, Munson PJ, Furano AV (2004) The insertional history of an active family of L1 retrotransposons in humans. Genome Res 14: 1221-1231.
    • (2004) Genome Res , vol.14 , pp. 1221-1231
    • Boissinot, S.1    Entezam, A.2    Young, L.3    Munson, P.J.4    Furano, A.V.5
  • 26
    • 0034612238 scopus 로고    scopus 로고
    • Molecular evidence for a relationship between LINE-1 elements and X chromosome inactivation: The Lyon repeat hypothesis
    • Bailey JA, Carrel L, Chakravarti A, Eichler EE (2000) Molecular evidence for a relationship between LINE-1 elements and X chromosome inactivation: the Lyon repeat hypothesis. Proc Natl Acad Sci U S A 97: 6634-6639.
    • (2000) Proc Natl Acad Sci U S A , vol.97 , pp. 6634-6639
    • Bailey, J.A.1    Carrel, L.2    Chakravarti, A.3    Eichler, E.E.4
  • 27
    • 0042692850 scopus 로고    scopus 로고
    • High concentrations of long interspersed nuclear element sequence distinguish monoallelically expressed genes
    • Allen E, Horvath S, Tong F, Kraft P, Spiteri E, et al. (2003) High concentrations of long interspersed nuclear element sequence distinguish monoallelically expressed genes. Proc Natl Acad Sci U S A 100: 9940-9945.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 9940-9945
    • Allen, E.1    Horvath, S.2    Tong, F.3    Kraft, P.4    Spiteri, E.5
  • 28
    • 34548444664 scopus 로고    scopus 로고
    • Comparative analysis of sequence characteristics of imprinted genes in human, mouse, and cattle
    • Khatib H, Zaitoun I, Kim ES (2007) Comparative analysis of sequence characteristics of imprinted genes in human, mouse, and cattle. Mamm Genome 18: 538-547.
    • (2007) Mamm Genome , vol.18 , pp. 538-547
    • Khatib, H.1    Zaitoun, I.2    Kim, E.S.3
  • 29
    • 15444372817 scopus 로고    scopus 로고
    • The profile of repeat-associated histone lysine methylation states in the mouse epigenome
    • Martens JH, O'Sullivan RJ, Braunschweig U, Opravil S, Radolf M, et al. (2005) The profile of repeat-associated histone lysine methylation states in the mouse epigenome. Embo J 24: 800-812.
    • (2005) Embo J , vol.24 , pp. 800-812
    • Martens, J.H.1    O'Sullivan, R.J.2    Braunschweig, U.3    Opravil, S.4    Radolf, M.5
  • 30
    • 33745757882 scopus 로고    scopus 로고
    • The genomic distribution of l1 elements: The role of insertion bias and natural selection
    • Graham T, Boissinot S (2006) The genomic distribution of l1 elements: the role of insertion bias and natural selection. J Biomed Biotechnol 2006: 75327.
    • (2006) J Biomed Biotechnol , vol.2006 , pp. 75327
    • Graham, T.1    Boissinot, S.2
  • 31
    • 32944476464 scopus 로고    scopus 로고
    • Expression of LINE-1 retroposons is essential for murine preimplantation development
    • Beraldi R, Pittoggi C, Sciamanna I, Mattei E, Spadafora C (2006) Expression of LINE-1 retroposons is essential for murine preimplantation development. Mol Reprod Dev 73: 279-287.
    • (2006) Mol Reprod Dev , vol.73 , pp. 279-287
    • Beraldi, R.1    Pittoggi, C.2    Sciamanna, I.3    Mattei, E.4    Spadafora, C.5
  • 32
    • 20544466648 scopus 로고    scopus 로고
    • Somatic mosaicism in neuronal precursor cells mediated by L1 retrotransposition
    • Muotri AR, Chu VT, Marchetto MC, Deng W, Moran JV, et al. (2005) Somatic mosaicism in neuronal precursor cells mediated by L1 retrotransposition. Nature 435: 903-910.
    • (2005) Nature , vol.435 , pp. 903-910
    • Muotri, A.R.1    Chu, V.T.2    Marchetto, M.C.3    Deng, W.4    Moran, J.V.5
  • 33
    • 70350455280 scopus 로고    scopus 로고
    • Epigenetic regulation of Mammalian genomes by transposable elements
    • Huda A, Jordan IK (2009) Epigenetic regulation of Mammalian genomes by transposable elements. Ann N Y Acad Sci 1178: 276-284.
    • (2009) Ann N Y Acad Sci , vol.1178 , pp. 276-284
    • Huda, A.1    Jordan, I.K.2
  • 34
    • 62549114851 scopus 로고    scopus 로고
    • Repetitive DNA elements, nucleosome binding and human gene expression
    • Huda A, Marino-Ramirez L, Landsman D, Jordan IK (2009) Repetitive DNA elements, nucleosome binding and human gene expression. Gene 436: 12-22.
    • (2009) Gene , vol.436 , pp. 12-22
    • Huda, A.1    Marino-Ramirez, L.2    Landsman, D.3    Jordan, I.K.4
  • 35
    • 33947303168 scopus 로고    scopus 로고
    • Transposable elements and the epigenetic regulation of the genome
    • Slotkin RK, Martienssen R (2007) Transposable elements and the epigenetic regulation of the genome. Nat Rev Genet 8: 272-285.
    • (2007) Nat Rev Genet , vol.8 , pp. 272-285
    • Slotkin, R.K.1    Martienssen, R.2
  • 36
    • 59949085939 scopus 로고    scopus 로고
    • H3K27me3 forms BLOCs over silent genes and intergenic regions and specifies a histone banding pattern on a mouse autosomal chromosome
    • Pauler FM, Sloane MA, Huang R, Regha K, Koerner MV, et al. (2009) H3K27me3 forms BLOCs over silent genes and intergenic regions and specifies a histone banding pattern on a mouse autosomal chromosome. Genome Res 19: 221-233.
    • (2009) Genome Res , vol.19 , pp. 221-233
    • Pauler, F.M.1    Sloane, M.A.2    Huang, R.3    Regha, K.4    Koerner, M.V.5
  • 37
    • 2442667886 scopus 로고    scopus 로고
    • Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes
    • Han JS, Szak ST, Boeke JD (2004) Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes. Nature 429: 268-274.
    • (2004) Nature , vol.429 , pp. 268-274
    • Han, J.S.1    Szak, S.T.2    Boeke, J.D.3
  • 38
    • 33845621109 scopus 로고    scopus 로고
    • Control of FWA gene silencing in Arabidopsis thaliana by SINE-related direct repeats
    • Kinoshita Y, Saze H, Kinoshita T, Miura A, Soppe WJ, et al. (2007) Control of FWA gene silencing in Arabidopsis thaliana by SINE-related direct repeats. Plant J 49: 38-45.
    • (2007) Plant J , vol.49 , pp. 38-45
    • Kinoshita, Y.1    Saze, H.2    Kinoshita, T.3    Miura, A.4    Soppe, W.J.5
  • 39
    • 0032819331 scopus 로고    scopus 로고
    • Unlocking the mechanisms of transcription factor YY1: Are chromatin modifying enzymes the key?
    • Thomas MJ, Seto E (1999) Unlocking the mechanisms of transcription factor YY1: are chromatin modifying enzymes the key? Gene 236: 197-208.
    • (1999) Gene , vol.236 , pp. 197-208
    • Thomas, M.J.1    Seto, E.2
  • 40
    • 57649221599 scopus 로고    scopus 로고
    • Epigenetic silencing of CCAAT/enhancer-binding protein delta activity by YY1/polycomb group/DNA methyltransferase complex
    • Ko CY, Hsu HC, Shen MR, Chang WC, Wang JM (2008) Epigenetic silencing of CCAAT/enhancer-binding protein delta activity by YY1/polycomb group/DNA methyltransferase complex. J Biol Chem 283: 30919-30932.
    • (2008) J Biol Chem , vol.283 , pp. 30919-30932
    • Ko, C.Y.1    Hsu, H.C.2    Shen, M.R.3    Chang, W.C.4    Wang, J.M.5
  • 41
    • 0042847306 scopus 로고    scopus 로고
    • Redox regulation of a novel L1Md-A2 retrotransposon in vascular smooth muscle cells
    • Lu KP, Ramos KS (2003) Redox regulation of a novel L1Md-A2 retrotransposon in vascular smooth muscle cells. J Biol Chem 278: 28201-28209.
    • (2003) J Biol Chem , vol.278 , pp. 28201-28209
    • Lu, K.P.1    Ramos, K.S.2
  • 42
    • 0023695504 scopus 로고
    • The structure of the regulatory region of the rat L1 (L1Rn, long interspersed repeated) DNA family of transposable elements
    • Furano AV, Robb SM, Robb FT (1988) The structure of the regulatory region of the rat L1 (L1Rn, long interspersed repeated) DNA family of transposable elements. Nucleic Acids Res 16: 9215-9231.
    • (1988) Nucleic Acids Res , vol.16 , pp. 9215-9231
    • Furano, A.V.1    Robb, S.M.2    Robb, F.T.3
  • 43
    • 0030940594 scopus 로고    scopus 로고
    • Identification of critical CpG sites for repression of L1 transcription by DNA methylation
    • Hata K, Sakaki Y (1997) Identification of critical CpG sites for repression of L1 transcription by DNA methylation. Gene 189: 227-234.
    • (1997) Gene , vol.189 , pp. 227-234
    • Hata, K.1    Sakaki, Y.2
  • 44
    • 13844275301 scopus 로고    scopus 로고
    • Similarity of position frequency matrices for transcription factor binding sites
    • Schones DE, Sumazin P, Zhang MQ (2005) Similarity of position frequency matrices for transcription factor binding sites. Bioinformatics 21: 307-313.
    • (2005) Bioinformatics , vol.21 , pp. 307-313
    • Schones, D.E.1    Sumazin, P.2    Zhang, M.Q.3
  • 45
    • 51049112461 scopus 로고    scopus 로고
    • CpG dinucleotides and the mutation rate of non-CpG DNA
    • Walser JC, Ponger L, Furano AV (2008) CpG dinucleotides and the mutation rate of non-CpG DNA. Genome Res 18: 1403-1414.
    • (2008) Genome Res , vol.18 , pp. 1403-1414
    • Walser, J.C.1    Ponger, L.2    Furano, A.V.3
  • 46
    • 69849108458 scopus 로고    scopus 로고
    • Control of chicken CR1 retrotransposons is independent of Dicer-mediated RNA interference pathway
    • Lee SH, Eldi P, Cho SY, Rangasamy D (2009) Control of chicken CR1 retrotransposons is independent of Dicer-mediated RNA interference pathway. BMC Biol 7: 53.
    • (2009) BMC Biol , vol.7 , pp. 53
    • Lee, S.H.1    Eldi, P.2    Cho, S.Y.3    Rangasamy, D.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.